data_5AIU # _model_server_result.job_id B4K4w8UYN4QXC6xmNGyCEw _model_server_result.datetime_utc '2024-11-22 08:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1260}' # _entry.id 5AIU # _exptl.entry_id 5AIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AIU _cell.length_a 69.19 _cell.length_b 169.21 _cell.length_c 52.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 10 A CYS 136 1_555 F ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 13 A CYS 139 1_555 F ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A SG CYS 32 A CYS 158 1_555 G ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A ND1 HIS 34 A HIS 160 1_555 G ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A SG CYS 37 A CYS 163 1_555 F ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 A SG CYS 40 A CYS 166 1_555 F ZN ZN . A ZN 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A SG CYS 51 A CYS 177 1_555 G ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc8 A SG CYS 54 A CYS 180 1_555 G ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc9 A SG CYS 75 A CYS 201 1_555 H ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 A SG CYS 78 A CYS 204 1_555 H ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc11 A SG CYS 97 A CYS 223 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 A ND1 HIS 99 A HIS 225 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc13 A SG CYS 102 A CYS 228 1_555 H ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 A SG CYS 105 A CYS 231 1_555 H ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 A SG CYS 116 A CYS 242 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc16 A SG CYS 119 A CYS 245 1_555 I ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5AIU _atom_sites.fract_transf_matrix[1][1] 0.014453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN A 1 800 800 ZN ZN . G 4 ZN A 1 801 801 ZN ZN . H 4 ZN A 1 802 802 ZN ZN . I 4 ZN A 1 803 803 ZN ZN . J 5 EDO A 1 1260 1260 EDO EDO . K 5 EDO B 1 1152 1152 EDO EDO . L 5 EDO B 1 1153 1153 EDO EDO . M 5 EDO C 1 1077 1077 EDO EDO . N 5 EDO E 1 1152 1152 EDO EDO . O 5 EDO F 1 1077 1077 EDO EDO . P 6 HOH A 1 2001 2001 HOH HOH . P 6 HOH A 2 2002 2002 HOH HOH . P 6 HOH A 3 2003 2003 HOH HOH . P 6 HOH A 4 2004 2004 HOH HOH . P 6 HOH A 5 2005 2005 HOH HOH . P 6 HOH A 6 2006 2006 HOH HOH . Q 6 HOH B 1 2001 2001 HOH HOH . Q 6 HOH B 2 2002 2002 HOH HOH . Q 6 HOH B 3 2003 2003 HOH HOH . Q 6 HOH B 4 2004 2004 HOH HOH . Q 6 HOH B 5 2005 2005 HOH HOH . Q 6 HOH B 6 2006 2006 HOH HOH . Q 6 HOH B 7 2007 2007 HOH HOH . Q 6 HOH B 8 2008 2008 HOH HOH . Q 6 HOH B 9 2009 2009 HOH HOH . Q 6 HOH B 10 2010 2010 HOH HOH . R 6 HOH C 1 2001 2001 HOH HOH . R 6 HOH C 2 2002 2002 HOH HOH . S 6 HOH E 1 2001 2001 HOH HOH . S 6 HOH E 2 2002 2002 HOH HOH . S 6 HOH E 3 2003 2003 HOH HOH . S 6 HOH E 4 2004 2004 HOH HOH . S 6 HOH E 5 2005 2005 HOH HOH . S 6 HOH E 6 2006 2006 HOH HOH . S 6 HOH E 7 2007 2007 HOH HOH . S 6 HOH E 8 2008 2008 HOH HOH . S 6 HOH E 9 2009 2009 HOH HOH . S 6 HOH E 10 2010 2010 HOH HOH . S 6 HOH E 11 2011 2011 HOH HOH . S 6 HOH E 12 2012 2012 HOH HOH . T 6 HOH F 1 2001 2001 HOH HOH . T 6 HOH F 2 2002 2002 HOH HOH . T 6 HOH F 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 5 -9.34 207.196 42.251 1 15.32 ? C1 EDO 1260 A 1 HETATM 2 O O1 EDO . . . J 5 -7.972 207.46 41.818 1 14.31 ? O1 EDO 1260 A 1 HETATM 3 C C2 EDO . . . J 5 -9.441 206.022 43.249 1 14.72 ? C2 EDO 1260 A 1 HETATM 4 O O2 EDO . . . J 5 -8.878 204.887 42.554 1 16.1 ? O2 EDO 1260 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #