data_5AJI # _model_server_result.job_id Y6MblTY0xdW_ttXcgZ7kuw _model_server_result.datetime_utc '2025-08-31 11:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":404}' # _entry.id 5AJI # _exptl.entry_id 5AJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AJI _cell.length_a 126.33 _cell.length_b 149.09 _cell.length_c 173.82 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 O N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 66 A ALA 66 1_555 A N R1A 67 A R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C R1A 67 A R1A 67 1_555 A N PHE 68 A PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C ALA 66 B ALA 66 1_555 B N R1A 67 B R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C R1A 67 B R1A 67 1_555 B N PHE 68 B PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C ALA 66 C ALA 66 1_555 C N R1A 67 C R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 C C R1A 67 C R1A 67 1_555 C N PHE 68 C PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 D C ALA 66 D ALA 66 1_555 D N R1A 67 D R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 D C R1A 67 D R1A 67 1_555 D N PHE 68 D PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C ALA 66 E ALA 66 1_555 E N R1A 67 E R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 E C R1A 67 E R1A 67 1_555 E N PHE 68 E PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 F C ALA 66 F ALA 66 1_555 F N R1A 67 F R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 F C R1A 67 F R1A 67 1_555 F N PHE 68 F PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 G C ALA 66 G ALA 66 1_555 G N R1A 67 G R1A 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 G C R1A 67 G R1A 67 1_555 G N PHE 68 G PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 70 n n C1 H11 D10 sing 71 n n C1 H12 D10 sing 72 n n C1 H13 D10 sing 73 n n C2 C3 D10 sing 74 n n C2 H21 D10 sing 75 n n C2 H22 D10 sing 76 n n C3 C4 D10 sing 77 n n C3 H31 D10 sing 78 n n C3 H32 D10 sing 79 n n C4 C5 D10 sing 80 n n C4 H41 D10 sing 81 n n C4 H42 D10 sing 82 n n C5 C6 D10 sing 83 n n C5 H51 D10 sing 84 n n C5 H52 D10 sing 85 n n C6 C7 D10 sing 86 n n C6 H61 D10 sing 87 n n C6 H62 D10 sing 88 n n C7 C8 D10 sing 89 n n C7 H71 D10 sing 90 n n C7 H72 D10 sing 91 n n C8 C9 D10 sing 92 n n C8 H81 D10 sing 93 n n C8 H82 D10 sing 94 n n C9 C10 D10 sing 95 n n C9 H91 D10 sing 96 n n C9 H92 D10 sing 97 n n C10 H101 D10 sing 98 n n C10 H102 D10 sing 99 n n C10 H103 D10 sing 100 n n # _atom_sites.entry_id 5AJI _atom_sites.fract_transf_matrix[1][1] 0.007916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 OCT A 1 401 401 OCT OCT . I 3 HEX A 1 501 501 HEX HEX . J 3 HEX B 1 500 500 HEX HEX . K 3 HEX B 1 501 501 HEX HEX . L 4 D10 C 1 402 402 D10 D10 . M 3 HEX C 1 500 500 HEX HEX . N 3 HEX C 1 501 501 HEX HEX . O 4 D10 D 1 404 404 D10 D10 . P 3 HEX D 1 501 501 HEX HEX . Q 2 OCT E 1 406 406 OCT OCT . R 3 HEX E 1 500 500 HEX HEX . S 3 HEX E 1 501 501 HEX HEX . T 3 HEX F 1 500 500 HEX HEX . U 3 HEX F 1 501 501 HEX HEX . V 4 D10 G 1 408 408 D10 D10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . O 4 -25.688 -22.06 41.352 1 112.32 ? C1 D10 404 D 1 HETATM 2 C C2 D10 . . . O 4 -25.997 -22.225 39.87 1 114.41 ? C2 D10 404 D 1 HETATM 3 C C3 D10 . . . O 4 -27.492 -22.036 39.589 1 115.5 ? C3 D10 404 D 1 HETATM 4 C C4 D10 . . . O 4 -27.799 -21.648 38.141 1 114.82 ? C4 D10 404 D 1 HETATM 5 C C5 D10 . . . O 4 -29.272 -21.249 37.996 1 116.34 ? C5 D10 404 D 1 HETATM 6 C C6 D10 . . . O 4 -29.626 -20.793 36.571 1 118.31 ? C6 D10 404 D 1 HETATM 7 C C7 D10 . . . O 4 -31.061 -20.256 36.457 1 118.02 ? C7 D10 404 D 1 HETATM 8 C C8 D10 . . . O 4 -31.629 -20.404 35.043 1 116.59 ? C8 D10 404 D 1 HETATM 9 C C9 D10 . . . O 4 -32.767 -19.421 34.755 1 114.87 ? C9 D10 404 D 1 HETATM 10 C C10 D10 . . . O 4 -32.455 -18.554 33.546 1 112.47 ? C10 D10 404 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #