data_5AJT # _model_server_result.job_id uIbkpcEBu9TKh6nkk-qPVQ _model_server_result.datetime_utc '2024-11-11 15:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ajt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1242}' # _entry.id 5AJT # _exptl.entry_id 5AJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.03 _cell.angle_gamma 90 _cell.entry_id 5AJT _cell.length_a 82.54 _cell.length_b 83.17 _cell.length_c 163.652 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5AJT _atom_sites.fract_transf_matrix[1][1] 0.012115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000854 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 1241 1241 EDO EDO . F 2 EDO A 1 1242 1242 EDO EDO . G 3 TAR A 1 1243 1243 TAR TAR . H 2 EDO B 1 1241 1241 EDO EDO . I 3 TAR B 1 1242 1242 TAR TAR . J 2 EDO C 1 1241 1241 EDO EDO . K 3 TAR C 1 1242 1242 TAR TAR . L 2 EDO D 1 1241 1241 EDO EDO . M 3 TAR D 1 1242 1242 TAR SRT . N 3 TAR D 1 1243 1243 TAR TAR . O 4 HOH A 1 2001 2001 HOH HOH . O 4 HOH A 2 2002 2002 HOH HOH . O 4 HOH A 3 2003 2003 HOH HOH . O 4 HOH A 4 2004 2004 HOH HOH . O 4 HOH A 5 2005 2005 HOH HOH . O 4 HOH A 6 2006 2006 HOH HOH . O 4 HOH A 7 2007 2007 HOH HOH . O 4 HOH A 8 2008 2008 HOH HOH . O 4 HOH A 9 2009 2009 HOH HOH . O 4 HOH A 10 2010 2010 HOH HOH . O 4 HOH A 11 2011 2011 HOH HOH . O 4 HOH A 12 2012 2012 HOH HOH . O 4 HOH A 13 2013 2013 HOH HOH . O 4 HOH A 14 2014 2014 HOH HOH . O 4 HOH A 15 2015 2015 HOH HOH . O 4 HOH A 16 2016 2016 HOH HOH . O 4 HOH A 17 2017 2017 HOH HOH . O 4 HOH A 18 2018 2018 HOH HOH . O 4 HOH A 19 2019 2019 HOH HOH . O 4 HOH A 20 2020 2020 HOH HOH . O 4 HOH A 21 2021 2021 HOH HOH . O 4 HOH A 22 2022 2022 HOH HOH . O 4 HOH A 23 2023 2023 HOH HOH . O 4 HOH A 24 2024 2024 HOH HOH . O 4 HOH A 25 2025 2025 HOH HOH . O 4 HOH A 26 2026 2026 HOH HOH . O 4 HOH A 27 2027 2027 HOH HOH . O 4 HOH A 28 2028 2028 HOH HOH . O 4 HOH A 29 2029 2029 HOH HOH . O 4 HOH A 30 2030 2030 HOH HOH . O 4 HOH A 31 2031 2031 HOH HOH . O 4 HOH A 32 2032 2032 HOH HOH . O 4 HOH A 33 2033 2033 HOH HOH . O 4 HOH A 34 2034 2034 HOH HOH . O 4 HOH A 35 2035 2035 HOH HOH . O 4 HOH A 36 2036 2036 HOH HOH . O 4 HOH A 37 2037 2037 HOH HOH . O 4 HOH A 38 2038 2038 HOH HOH . O 4 HOH A 39 2039 2039 HOH HOH . O 4 HOH A 40 2040 2040 HOH HOH . O 4 HOH A 41 2041 2041 HOH HOH . O 4 HOH A 42 2042 2042 HOH HOH . O 4 HOH A 43 2043 2043 HOH HOH . O 4 HOH A 44 2044 2044 HOH HOH . O 4 HOH A 45 2045 2045 HOH HOH . O 4 HOH A 46 2046 2046 HOH HOH . P 4 HOH B 1 2001 2001 HOH HOH . P 4 HOH B 2 2002 2002 HOH HOH . P 4 HOH B 3 2003 2003 HOH HOH . P 4 HOH B 4 2004 2004 HOH HOH . P 4 HOH B 5 2005 2005 HOH HOH . P 4 HOH B 6 2006 2006 HOH HOH . P 4 HOH B 7 2007 2007 HOH HOH . P 4 HOH B 8 2008 2008 HOH HOH . P 4 HOH B 9 2009 2009 HOH HOH . P 4 HOH B 10 2010 2010 HOH HOH . P 4 HOH B 11 2011 2011 HOH HOH . P 4 HOH B 12 2012 2012 HOH HOH . P 4 HOH B 13 2013 2013 HOH HOH . P 4 HOH B 14 2014 2014 HOH HOH . P 4 HOH B 15 2015 2015 HOH HOH . P 4 HOH B 16 2016 2016 HOH HOH . P 4 HOH B 17 2017 2017 HOH HOH . P 4 HOH B 18 2018 2018 HOH HOH . P 4 HOH B 19 2019 2019 HOH HOH . P 4 HOH B 20 2020 2020 HOH HOH . P 4 HOH B 21 2021 2021 HOH HOH . P 4 HOH B 22 2022 2022 HOH HOH . P 4 HOH B 23 2023 2023 HOH HOH . P 4 HOH B 24 2024 2024 HOH HOH . P 4 HOH B 25 2025 2025 HOH HOH . P 4 HOH B 26 2026 2026 HOH HOH . P 4 HOH B 27 2027 2027 HOH HOH . P 4 HOH B 28 2028 2028 HOH HOH . P 4 HOH B 29 2029 2029 HOH HOH . P 4 HOH B 30 2030 2030 HOH HOH . P 4 HOH B 31 2031 2031 HOH HOH . P 4 HOH B 32 2032 2032 HOH HOH . P 4 HOH B 33 2033 2033 HOH HOH . P 4 HOH B 34 2034 2034 HOH HOH . P 4 HOH B 35 2035 2035 HOH HOH . Q 4 HOH C 1 2001 2001 HOH HOH . Q 4 HOH C 2 2002 2002 HOH HOH . Q 4 HOH C 3 2003 2003 HOH HOH . Q 4 HOH C 4 2004 2004 HOH HOH . Q 4 HOH C 5 2005 2005 HOH HOH . Q 4 HOH C 6 2006 2006 HOH HOH . Q 4 HOH C 7 2007 2007 HOH HOH . Q 4 HOH C 8 2008 2008 HOH HOH . Q 4 HOH C 9 2009 2009 HOH HOH . Q 4 HOH C 10 2010 2010 HOH HOH . Q 4 HOH C 11 2011 2011 HOH HOH . Q 4 HOH C 12 2012 2012 HOH HOH . Q 4 HOH C 13 2013 2013 HOH HOH . Q 4 HOH C 14 2014 2014 HOH HOH . Q 4 HOH C 15 2015 2015 HOH HOH . Q 4 HOH C 16 2016 2016 HOH HOH . Q 4 HOH C 17 2017 2017 HOH HOH . Q 4 HOH C 18 2018 2018 HOH HOH . Q 4 HOH C 19 2019 2019 HOH HOH . Q 4 HOH C 20 2020 2020 HOH HOH . Q 4 HOH C 21 2021 2021 HOH HOH . Q 4 HOH C 22 2022 2022 HOH HOH . Q 4 HOH C 23 2023 2023 HOH HOH . Q 4 HOH C 24 2024 2024 HOH HOH . Q 4 HOH C 25 2025 2025 HOH HOH . Q 4 HOH C 26 2026 2026 HOH HOH . Q 4 HOH C 27 2027 2027 HOH HOH . R 4 HOH D 1 2001 2001 HOH HOH . R 4 HOH D 2 2002 2002 HOH HOH . R 4 HOH D 3 2003 2003 HOH HOH . R 4 HOH D 4 2004 2004 HOH HOH . R 4 HOH D 5 2005 2005 HOH HOH . R 4 HOH D 6 2006 2006 HOH HOH . R 4 HOH D 7 2007 2007 HOH HOH . R 4 HOH D 8 2008 2008 HOH HOH . R 4 HOH D 9 2009 2009 HOH HOH . R 4 HOH D 10 2010 2010 HOH HOH . R 4 HOH D 11 2011 2011 HOH HOH . R 4 HOH D 12 2012 2012 HOH HOH . R 4 HOH D 13 2013 2013 HOH HOH . R 4 HOH D 14 2014 2014 HOH HOH . R 4 HOH D 15 2015 2015 HOH HOH . R 4 HOH D 16 2016 2016 HOH HOH . R 4 HOH D 17 2017 2017 HOH HOH . R 4 HOH D 18 2018 2018 HOH HOH . R 4 HOH D 19 2019 2019 HOH HOH . R 4 HOH D 20 2020 2020 HOH HOH . R 4 HOH D 21 2021 2021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 -16.205 18.641 73.226 1 116.38 ? C1 EDO 1242 A 1 HETATM 2 O O1 EDO . . . F 2 -15.983 19.072 71.879 1 116.42 ? O1 EDO 1242 A 1 HETATM 3 C C2 EDO . . . F 2 -15.871 19.776 74.186 1 114.03 ? C2 EDO 1242 A 1 HETATM 4 O O2 EDO . . . F 2 -14.513 20.186 73.994 1 111.25 ? O2 EDO 1242 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #