data_5AJV # _model_server_result.job_id 9zxGuKbxejzrYdeL5pO8KA _model_server_result.datetime_utc '2024-11-06 00:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ajv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1450}' # _entry.id 5AJV # _exptl.entry_id 5AJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AJV _cell.length_a 102.63 _cell.length_b 102.63 _cell.length_c 258.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 43.035 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FDP _chem_comp.mon_nstd_flag n _chem_comp.name 2,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FDP doub 128 n n P1 O2P FDP sing 129 n n P1 O3P FDP sing 130 n n P1 O2 FDP sing 131 n n O2P HOP2 FDP sing 132 n n O3P HOP3 FDP sing 133 n n O1 C1 FDP sing 134 n n O1 HO1 FDP sing 135 n n C1 C2 FDP sing 136 n n C1 H11 FDP sing 137 n n C1 H12 FDP sing 138 n n C2 O2 FDP sing 139 n n C2 C3 FDP sing 140 n n C2 O5 FDP sing 141 n n C3 O3 FDP sing 142 n n C3 C4 FDP sing 143 n n C3 H3 FDP sing 144 n n O3 HO3 FDP sing 145 n n C4 O4 FDP sing 146 n n C4 C5 FDP sing 147 n n C4 H4 FDP sing 148 n n O4 HO4 FDP sing 149 n n C5 O5 FDP sing 150 n n C5 C6 FDP sing 151 n n C5 H5 FDP sing 152 n n C6 O6 FDP sing 153 n n C6 H61 FDP sing 154 n n C6 H62 FDP sing 155 n n O6 P2 FDP sing 156 n n P2 O4P FDP doub 157 n n P2 O5P FDP sing 158 n n P2 O6P FDP sing 159 n n O5P HOP5 FDP sing 160 n n O6P HOP6 FDP sing 161 n n # _pdbx_chem_comp_identifier.comp_id FDP _pdbx_chem_comp_identifier.identifier b-D-Fruf2PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5AJV _atom_sites.fract_transf_matrix[1][1] 0.009744 _atom_sites.fract_transf_matrix[1][2] 0.005626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 B 1 1446 1446 PO4 PO4 . C 2 PO4 B 1 1447 1447 PO4 PO4 . D 2 PO4 B 1 1448 1448 PO4 PO4 . E 3 8R2 B 1 1449 1449 8R2 8R2 . F 4 FDP B 1 1450 1450 FDP FDP . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . G 5 HOH B 15 2015 2015 HOH HOH . G 5 HOH B 16 2016 2016 HOH HOH . G 5 HOH B 17 2017 2017 HOH HOH . G 5 HOH B 18 2018 2018 HOH HOH . G 5 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FDP . . . F 4 8.409 -23.154 16.81 1 92.13 ? P1 FDP 1450 B 1 HETATM 2 O O1P FDP . . . F 4 8.391 -22.689 18.272 1 84.54 ? O1P FDP 1450 B 1 HETATM 3 O O2P FDP . . . F 4 7.062 -23.745 16.407 1 82.2 ? O2P FDP 1450 B 1 HETATM 4 O O3P FDP . . . F 4 9.396 -24.294 16.555 1 75.06 ? O3P FDP 1450 B 1 HETATM 5 O O1 FDP . . . F 4 6.429 -21.023 13.036 1 56.02 ? O1 FDP 1450 B 1 HETATM 6 C C1 FDP . . . F 4 6.758 -21.394 14.385 1 65.12 ? C1 FDP 1450 B 1 HETATM 7 C C2 FDP . . . F 4 8.185 -20.929 14.787 1 67.78 ? C2 FDP 1450 B 1 HETATM 8 O O2 FDP . . . F 4 8.814 -21.718 15.938 1 73.16 ? O2 FDP 1450 B 1 HETATM 9 C C3 FDP . . . F 4 8.155 -19.38 14.976 1 64.45 ? C3 FDP 1450 B 1 HETATM 10 O O3 FDP . . . F 4 8.521 -18.984 16.292 1 65.39 ? O3 FDP 1450 B 1 HETATM 11 C C4 FDP . . . F 4 9.158 -18.821 13.971 1 61.62 ? C4 FDP 1450 B 1 HETATM 12 O O4 FDP . . . F 4 8.997 -17.49 13.514 1 55.78 ? O4 FDP 1450 B 1 HETATM 13 C C5 FDP . . . F 4 9.018 -19.775 12.822 1 56.39 ? C5 FDP 1450 B 1 HETATM 14 O O5 FDP . . . F 4 8.924 -21.027 13.539 1 60.12 ? O5 FDP 1450 B 1 HETATM 15 C C6 FDP . . . F 4 10.202 -19.683 11.861 1 53.72 ? C6 FDP 1450 B 1 HETATM 16 O O6 FDP . . . F 4 9.784 -19.879 10.514 1 54.13 ? O6 FDP 1450 B 1 HETATM 17 P P2 FDP . . . F 4 10.461 -19.079 9.279 1 61.32 ? P2 FDP 1450 B 1 HETATM 18 O O4P FDP . . . F 4 10.111 -17.621 9.49 1 61.39 ? O4P FDP 1450 B 1 HETATM 19 O O5P FDP . . . F 4 11.92 -19.425 9.475 1 59.38 ? O5P FDP 1450 B 1 HETATM 20 O O6P FDP . . . F 4 9.801 -19.562 8.001 1 57.15 ? O6P FDP 1450 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #