data_5AJW # _model_server_result.job_id FU9yFJ_odEqlBxxvhnlpGw _model_server_result.datetime_utc '2024-11-26 03:45:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ajw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1449}' # _entry.id 5AJW # _exptl.entry_id 5AJW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.456 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-N-[4-(2-amino-1-benzyl-3-cyano-indol-5-yl)oxyphenyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AJW _cell.length_a 102.53 _cell.length_b 102.53 _cell.length_c 260.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -43.385 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 N5 O2' _chem_comp.formula_weight 411.456 _chem_comp.id S6L _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-N-[4-(2-amino-1-benzyl-3-cyano-indol-5-yl)oxyphenyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C22 S6L doub 316 n n C22 C23 S6L sing 317 n n C22 N3 S6L sing 318 n n C23 N4 S6L sing 319 n n N3 C19 S6L sing 320 n n C19 C18 S6L sing 321 n y C19 C20 S6L doub 322 n y C18 C17 S6L doub 323 n y C17 C16 S6L sing 324 n y C20 C21 S6L sing 325 n y C21 C16 S6L doub 326 n y C16 O S6L sing 327 n n O C10 S6L sing 328 n n C10 C9 S6L sing 329 n y C10 C11 S6L doub 330 n y C9 C8 S6L doub 331 n y C8 C7 S6L sing 332 n y C11 C12 S6L sing 333 n y C12 C7 S6L doub 334 n y C12 C13 S6L sing 335 n y C7 N S6L sing 336 n y C13 C15 S6L sing 337 n n C13 C14 S6L doub 338 n y C15 N2 S6L trip 339 n n C14 N1 S6L sing 340 n n C14 N S6L sing 341 n y N C6 S6L sing 342 n n C6 C3 S6L sing 343 n n C3 C2 S6L sing 344 n y C3 C4 S6L doub 345 n y C2 C1 S6L doub 346 n y C1 C S6L sing 347 n y C4 C5 S6L sing 348 n y C5 C S6L doub 349 n y C23 H231 S6L sing 350 n n C23 H232 S6L sing 351 n n N3 H3 S6L sing 352 n n N4 H41N S6L sing 353 n n N4 H42N S6L sing 354 n n C18 H18 S6L sing 355 n n C20 H20 S6L sing 356 n n C17 H17 S6L sing 357 n n C21 H21 S6L sing 358 n n C9 H9 S6L sing 359 n n C11 H11 S6L sing 360 n n C8 H8 S6L sing 361 n n N1 H11N S6L sing 362 n n N1 H12N S6L sing 363 n n C6 H61C S6L sing 364 n n C6 H62C S6L sing 365 n n C2 H2 S6L sing 366 n n C4 H4 S6L sing 367 n n C1 H1 S6L sing 368 n n C H S6L sing 369 n n C5 H5 S6L sing 370 n n # _atom_sites.entry_id 5AJW _atom_sites.fract_transf_matrix[1][1] 0.009753 _atom_sites.fract_transf_matrix[1][2] 0.005631 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHS A 1 1446 1446 PHS PHS . C 3 PO4 A 1 1447 1447 PO4 PO4 . D 4 F6P A 1 1448 1448 F6P F6P . E 5 S6L A 1 1449 1449 S6L S6L . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . F 6 HOH A 83 2083 2083 HOH HOH . F 6 HOH A 84 2084 2084 HOH HOH . F 6 HOH A 85 2085 2085 HOH HOH . F 6 HOH A 86 2086 2086 HOH HOH . F 6 HOH A 87 2087 2087 HOH HOH . F 6 HOH A 88 2088 2088 HOH HOH . F 6 HOH A 89 2089 2089 HOH HOH . F 6 HOH A 90 2090 2090 HOH HOH . F 6 HOH A 91 2091 2091 HOH HOH . F 6 HOH A 92 2092 2092 HOH HOH . F 6 HOH A 93 2093 2093 HOH HOH . F 6 HOH A 94 2094 2094 HOH HOH . F 6 HOH A 95 2095 2095 HOH HOH . F 6 HOH A 96 2096 2096 HOH HOH . F 6 HOH A 97 2097 2097 HOH HOH . F 6 HOH A 98 2098 2098 HOH HOH . F 6 HOH A 99 2099 2099 HOH HOH . F 6 HOH A 100 2100 2100 HOH HOH . F 6 HOH A 101 2101 2101 HOH HOH . F 6 HOH A 102 2102 2102 HOH HOH . F 6 HOH A 103 2103 2103 HOH HOH . F 6 HOH A 104 2104 2104 HOH HOH . F 6 HOH A 105 2105 2105 HOH HOH . F 6 HOH A 106 2106 2106 HOH HOH . F 6 HOH A 107 2107 2107 HOH HOH . F 6 HOH A 108 2108 2108 HOH HOH . F 6 HOH A 109 2109 2109 HOH HOH . F 6 HOH A 110 2110 2110 HOH HOH . F 6 HOH A 111 2111 2111 HOH HOH . F 6 HOH A 112 2112 2112 HOH HOH . F 6 HOH A 113 2113 2113 HOH HOH . F 6 HOH A 114 2114 2114 HOH HOH . F 6 HOH A 115 2115 2115 HOH HOH . F 6 HOH A 116 2116 2116 HOH HOH . F 6 HOH A 117 2117 2117 HOH HOH . F 6 HOH A 118 2118 2118 HOH HOH . F 6 HOH A 119 2119 2119 HOH HOH . F 6 HOH A 120 2120 2120 HOH HOH . F 6 HOH A 121 2121 2121 HOH HOH . F 6 HOH A 122 2122 2122 HOH HOH . F 6 HOH A 123 2123 2123 HOH HOH . F 6 HOH A 124 2124 2124 HOH HOH . F 6 HOH A 125 2125 2125 HOH HOH . F 6 HOH A 126 2126 2126 HOH HOH . F 6 HOH A 127 2127 2127 HOH HOH . F 6 HOH A 128 2128 2128 HOH HOH . F 6 HOH A 129 2129 2129 HOH HOH . F 6 HOH A 130 2130 2130 HOH HOH . F 6 HOH A 131 2131 2131 HOH HOH . F 6 HOH A 132 2132 2132 HOH HOH . F 6 HOH A 133 2133 2133 HOH HOH . F 6 HOH A 134 2134 2134 HOH HOH . F 6 HOH A 135 2135 2135 HOH HOH . F 6 HOH A 136 2136 2136 HOH HOH . F 6 HOH A 137 2137 2137 HOH HOH . F 6 HOH A 138 2138 2138 HOH HOH . F 6 HOH A 139 2139 2139 HOH HOH . F 6 HOH A 140 2140 2140 HOH HOH . F 6 HOH A 141 2141 2141 HOH HOH . F 6 HOH A 142 2142 2142 HOH HOH . F 6 HOH A 143 2143 2143 HOH HOH . F 6 HOH A 144 2144 2144 HOH HOH . F 6 HOH A 145 2145 2145 HOH HOH . F 6 HOH A 146 2146 2146 HOH HOH . F 6 HOH A 147 2147 2147 HOH HOH . F 6 HOH A 148 2148 2148 HOH HOH . F 6 HOH A 149 2149 2149 HOH HOH . F 6 HOH A 150 2150 2150 HOH HOH . F 6 HOH A 151 2151 2151 HOH HOH . F 6 HOH A 152 2152 2152 HOH HOH . F 6 HOH A 153 2153 2153 HOH HOH . F 6 HOH A 154 2154 2154 HOH HOH . F 6 HOH A 155 2155 2155 HOH HOH . F 6 HOH A 156 2156 2156 HOH HOH . F 6 HOH A 157 2157 2157 HOH HOH . F 6 HOH A 158 2158 2158 HOH HOH . F 6 HOH A 159 2159 2159 HOH HOH . F 6 HOH A 160 2160 2160 HOH HOH . F 6 HOH A 161 2161 2161 HOH HOH . F 6 HOH A 162 2162 2162 HOH HOH . F 6 HOH A 163 2163 2163 HOH HOH . F 6 HOH A 164 2164 2164 HOH HOH . F 6 HOH A 165 2165 2165 HOH HOH . F 6 HOH A 166 2166 2166 HOH HOH . F 6 HOH A 167 2167 2167 HOH HOH . F 6 HOH A 168 2168 2168 HOH HOH . F 6 HOH A 169 2169 2169 HOH HOH . F 6 HOH A 170 2170 2170 HOH HOH . F 6 HOH A 171 2171 2171 HOH HOH . F 6 HOH A 172 2172 2172 HOH HOH . F 6 HOH A 173 2173 2173 HOH HOH . F 6 HOH A 174 2174 2174 HOH HOH . F 6 HOH A 175 2175 2175 HOH HOH . F 6 HOH A 176 2176 2176 HOH HOH . F 6 HOH A 177 2177 2177 HOH HOH . F 6 HOH A 178 2178 2178 HOH HOH . F 6 HOH A 179 2179 2179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 S6L . . . E 5 -39.941 -36.685 -19.803 1 51.82 ? O1 S6L 1449 A 1 HETATM 2 C C22 S6L . . . E 5 -40.362 -35.532 -19.76 1 50.43 ? C22 S6L 1449 A 1 HETATM 3 C C23 S6L . . . E 5 -40.457 -34.746 -21.067 1 50.31 ? C23 S6L 1449 A 1 HETATM 4 N N4 S6L . . . E 5 -39.2 -34.869 -21.843 1 52.11 ? N4 S6L 1449 A 1 HETATM 5 N N3 S6L . . . E 5 -40.749 -34.895 -18.63 1 50.84 ? N3 S6L 1449 A 1 HETATM 6 C C19 S6L . . . E 5 -40.957 -35.425 -17.331 1 52.03 ? C19 S6L 1449 A 1 HETATM 7 C C18 S6L . . . E 5 -41.378 -34.562 -16.323 1 52.33 ? C18 S6L 1449 A 1 HETATM 8 C C17 S6L . . . E 5 -41.697 -35.053 -15.067 1 52.4 ? C17 S6L 1449 A 1 HETATM 9 C C20 S6L . . . E 5 -40.835 -36.787 -17.058 1 52.28 ? C20 S6L 1449 A 1 HETATM 10 C C21 S6L . . . E 5 -41.171 -37.284 -15.811 1 53.12 ? C21 S6L 1449 A 1 HETATM 11 C C16 S6L . . . E 5 -41.613 -36.417 -14.818 1 52.84 ? C16 S6L 1449 A 1 HETATM 12 O O S6L . . . E 5 -42.047 -36.904 -13.58 1 51.76 ? O S6L 1449 A 1 HETATM 13 C C10 S6L . . . E 5 -41.642 -38.153 -13.098 1 50.54 ? C10 S6L 1449 A 1 HETATM 14 C C9 S6L . . . E 5 -40.311 -38.354 -12.752 1 49.85 ? C9 S6L 1449 A 1 HETATM 15 C C8 S6L . . . E 5 -39.909 -39.564 -12.212 1 51.84 ? C8 S6L 1449 A 1 HETATM 16 C C11 S6L . . . E 5 -42.589 -39.159 -12.929 1 49.39 ? C11 S6L 1449 A 1 HETATM 17 C C12 S6L . . . E 5 -42.196 -40.38 -12.377 1 49.5 ? C12 S6L 1449 A 1 HETATM 18 C C7 S6L . . . E 5 -40.854 -40.567 -12.012 1 52.31 ? C7 S6L 1449 A 1 HETATM 19 C C13 S6L . . . E 5 -42.868 -41.608 -12.056 1 50.64 ? C13 S6L 1449 A 1 HETATM 20 C C15 S6L . . . E 5 -44.269 -41.866 -12.204 1 50.95 ? C15 S6L 1449 A 1 HETATM 21 N N2 S6L . . . E 5 -45.396 -41.989 -12.348 1 50.38 ? N2 S6L 1449 A 1 HETATM 22 C C14 S6L . . . E 5 -41.939 -42.479 -11.473 1 54 ? C14 S6L 1449 A 1 HETATM 23 N N1 S6L . . . E 5 -42.134 -43.729 -11.021 1 57.51 ? N1 S6L 1449 A 1 HETATM 24 N N S6L . . . E 5 -40.724 -41.837 -11.43 1 53.46 ? N S6L 1449 A 1 HETATM 25 C C6 S6L . . . E 5 -39.481 -42.374 -10.827 1 53.37 ? C6 S6L 1449 A 1 HETATM 26 C C3 S6L . . . E 5 -38.406 -42.755 -11.818 1 56.95 ? C3 S6L 1449 A 1 HETATM 27 C C2 S6L . . . E 5 -37.061 -42.598 -11.496 1 59.22 ? C2 S6L 1449 A 1 HETATM 28 C C1 S6L . . . E 5 -36.066 -42.989 -12.385 1 60.77 ? C1 S6L 1449 A 1 HETATM 29 C C4 S6L . . . E 5 -38.73 -43.32 -13.048 1 57.91 ? C4 S6L 1449 A 1 HETATM 30 C C5 S6L . . . E 5 -37.735 -43.729 -13.927 1 58.25 ? C5 S6L 1449 A 1 HETATM 31 C C S6L . . . E 5 -36.403 -43.561 -13.598 1 59.66 ? C S6L 1449 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #