data_5AJX # _model_server_result.job_id JuDS-Xff_T6hm0pfPcFsxA _model_server_result.datetime_utc '2024-11-05 23:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ajx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1448}' # _entry.id 5AJX # _exptl.entry_id 5AJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.508 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-[4-[3-cyano-1-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]indol-5-yl]oxyphenyl]pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AJX _cell.length_a 102.282 _cell.length_b 102.282 _cell.length_c 259.716 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -43.286 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H25 N5 O3' _chem_comp.formula_weight 455.508 _chem_comp.id FD9 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-[4-[3-cyano-1-[(3,5-dimethyl-1,2-oxazol-4-yl)methyl]indol-5-yl]oxyphenyl]pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C25 FD9 trip 112 n n C25 C7 FD9 sing 113 n n C7 C6 FD9 doub 114 n y C7 C8 FD9 sing 115 n y C6 N1 FD9 sing 116 n y C8 C13 FD9 sing 117 n y C8 C9 FD9 doub 118 n y C13 C12 FD9 doub 119 n y C12 C11 FD9 sing 120 n y C12 O1 FD9 sing 121 n n C11 C10 FD9 doub 122 n y C10 C9 FD9 sing 123 n y C9 N1 FD9 sing 124 n y N1 C5 FD9 sing 125 n n C5 C2 FD9 sing 126 n n C2 C3 FD9 doub 127 n y C2 C1 FD9 sing 128 n y C3 C4 FD9 sing 129 n n C3 O FD9 sing 130 n y O N FD9 sing 131 n y N C1 FD9 doub 132 n y C1 C FD9 sing 133 n n O1 C14 FD9 sing 134 n n C14 C19 FD9 sing 135 n y C14 C15 FD9 doub 136 n y C19 C18 FD9 doub 137 n y C18 C17 FD9 sing 138 n y C17 C16 FD9 doub 139 n y C17 N2 FD9 sing 140 n n C16 C15 FD9 sing 141 n y N2 C20 FD9 sing 142 n n C20 O2 FD9 doub 143 n n C20 C21 FD9 sing 144 n n C21 N3 FD9 sing 145 n n C21 C22 FD9 sing 146 n n N3 C24 FD9 sing 147 n n C24 C23 FD9 sing 148 n n C23 C22 FD9 sing 149 n n C6 H6 FD9 sing 150 n n C13 H13 FD9 sing 151 n n C11 H11 FD9 sing 152 n n C10 H10 FD9 sing 153 n n C5 H51C FD9 sing 154 n n C5 H52C FD9 sing 155 n n C4 H41C FD9 sing 156 n n C4 H42C FD9 sing 157 n n C4 H43C FD9 sing 158 n n C HC1 FD9 sing 159 n n C HC2 FD9 sing 160 n n C HC3 FD9 sing 161 n n C19 H19 FD9 sing 162 n n C15 H15 FD9 sing 163 n n C18 H18 FD9 sing 164 n n C16 H16 FD9 sing 165 n n N2 H2 FD9 sing 166 n n C21 H21 FD9 sing 167 n n N3 H3 FD9 sing 168 n n C22 H221 FD9 sing 169 n n C22 H222 FD9 sing 170 n n C24 H241 FD9 sing 171 n n C24 H242 FD9 sing 172 n n C23 H231 FD9 sing 173 n n C23 H232 FD9 sing 174 n n # _atom_sites.entry_id 5AJX _atom_sites.fract_transf_matrix[1][1] 0.009777 _atom_sites.fract_transf_matrix[1][2] 0.005645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHS A 1 1445 1445 PHS PHS . C 3 PO4 A 1 1446 1446 PO4 PO4 . D 4 F6P A 1 1447 1447 F6P F6P . E 5 FD9 A 1 1448 1448 FD9 FD9 . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 FD9 . . . E 5 -45.481 -41.644 -12.699 1 67.94 ? N4 FD9 1448 A 1 HETATM 2 C C25 FD9 . . . E 5 -44.347 -41.563 -12.523 1 67.72 ? C25 FD9 1448 A 1 HETATM 3 C C7 FD9 . . . E 5 -42.935 -41.4 -12.322 1 67.53 ? C7 FD9 1448 A 1 HETATM 4 C C6 FD9 . . . E 5 -42.059 -42.335 -11.813 1 68.39 ? C6 FD9 1448 A 1 HETATM 5 C C8 FD9 . . . E 5 -42.179 -40.223 -12.621 1 66.83 ? C8 FD9 1448 A 1 HETATM 6 C C13 FD9 . . . E 5 -42.468 -38.977 -13.133 1 66.63 ? C13 FD9 1448 A 1 HETATM 7 C C12 FD9 . . . E 5 -41.455 -38.041 -13.307 1 64.85 ? C12 FD9 1448 A 1 HETATM 8 C C11 FD9 . . . E 5 -40.145 -38.33 -12.95 1 62.36 ? C11 FD9 1448 A 1 HETATM 9 C C10 FD9 . . . E 5 -39.809 -39.573 -12.427 1 64.58 ? C10 FD9 1448 A 1 HETATM 10 C C9 FD9 . . . E 5 -40.83 -40.517 -12.266 1 66.69 ? C9 FD9 1448 A 1 HETATM 11 N N1 FD9 . . . E 5 -40.794 -41.828 -11.77 1 68.68 ? N1 FD9 1448 A 1 HETATM 12 C C5 FD9 . . . E 5 -39.621 -42.549 -11.286 1 71.57 ? C5 FD9 1448 A 1 HETATM 13 C C2 FD9 . . . E 5 -38.562 -42.758 -12.324 1 75.33 ? C2 FD9 1448 A 1 HETATM 14 C C3 FD9 . . . E 5 -38.691 -43.326 -13.541 1 75.53 ? C3 FD9 1448 A 1 HETATM 15 C C4 FD9 . . . E 5 -39.835 -43.92 -14.281 1 74.23 ? C4 FD9 1448 A 1 HETATM 16 O O FD9 . . . E 5 -37.534 -43.365 -14.237 1 76.92 ? O FD9 1448 A 1 HETATM 17 N N FD9 . . . E 5 -36.558 -42.755 -13.371 1 78.37 ? N FD9 1448 A 1 HETATM 18 C C1 FD9 . . . E 5 -37.17 -42.378 -12.198 1 77.9 ? C1 FD9 1448 A 1 HETATM 19 C C FD9 . . . E 5 -36.529 -41.786 -11.196 1 78.67 ? C FD9 1448 A 1 HETATM 20 O O1 FD9 . . . E 5 -41.795 -36.798 -13.807 1 65.44 ? O1 FD9 1448 A 1 HETATM 21 C C14 FD9 . . . E 5 -41.443 -36.427 -15.116 1 63.57 ? C14 FD9 1448 A 1 HETATM 22 C C19 FD9 . . . E 5 -41.556 -35.07 -15.437 1 62.67 ? C19 FD9 1448 A 1 HETATM 23 C C18 FD9 . . . E 5 -41.23 -34.621 -16.706 1 61.59 ? C18 FD9 1448 A 1 HETATM 24 C C17 FD9 . . . E 5 -40.785 -35.516 -17.67 1 60.38 ? C17 FD9 1448 A 1 HETATM 25 C C16 FD9 . . . E 5 -40.672 -36.865 -17.346 1 60.92 ? C16 FD9 1448 A 1 HETATM 26 C C15 FD9 . . . E 5 -40.994 -37.341 -16.086 1 62.92 ? C15 FD9 1448 A 1 HETATM 27 N N2 FD9 . . . E 5 -40.471 -34.959 -18.956 1 60.23 ? N2 FD9 1448 A 1 HETATM 28 C C20 FD9 . . . E 5 -40.019 -35.585 -20.078 1 61.71 ? C20 FD9 1448 A 1 HETATM 29 O O2 FD9 . . . E 5 -39.81 -36.788 -20.132 1 63.69 ? O2 FD9 1448 A 1 HETATM 30 C C21 FD9 . . . E 5 -39.771 -34.693 -21.315 1 62.92 ? C21 FD9 1448 A 1 HETATM 31 N N3 FD9 . . . E 5 -38.923 -35.327 -22.339 1 65.26 ? N3 FD9 1448 A 1 HETATM 32 C C24 FD9 . . . E 5 -39.42 -34.921 -23.661 1 64.91 ? C24 FD9 1448 A 1 HETATM 33 C C23 FD9 . . . E 5 -40.924 -34.813 -23.482 1 65.31 ? C23 FD9 1448 A 1 HETATM 34 C C22 FD9 . . . E 5 -41.085 -34.371 -22.041 1 64.24 ? C22 FD9 1448 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #