data_5AKB
#
_model_server_result.job_id            atL-mSrozQfp5QPAeEIolw 
_model_server_result.datetime_utc      '2025-01-02 21:05:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5akb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1801}' 
#
_entry.id    5AKB 
#
_exptl.entry_id    5AKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.77 
_cell.angle_gamma         90 
_cell.entry_id            5AKB 
_cell.length_a            165.932 
_cell.length_b            188.544 
_cell.length_c            200.426 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PQS tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H 1 1 
E,F,I 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_858 -x+3,y,-z+3 -1 0 0 0 1 0 0 0 -1 447.796085 0 599.195495 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5AKB 
_atom_sites.fract_transf_matrix[1][1]    0.006027 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000503 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 ANP A 1 1801 1801 ANP ANP . 
H 3 ANP B 1 1801 1801 ANP ANP . 
I 3 ANP E 1 1801 1801 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . H 3 223.786 0.837 263.411 1 186.7 ? PG ANP 1801 B 1 
HETATM 2 O O1G ANP . . . H 3 223.094 -0.123 264.308 1 187.89 ? O1G ANP 1801 B 1 
HETATM 3 O O2G ANP . . . H 3 224.308 0.186 262.187 1 185.07 ? O2G ANP 1801 B 1 
HETATM 4 O O3G ANP . . . H 3 223.021 2.094 263.126 1 186.4 ? O3G ANP 1801 B 1 
HETATM 5 P PB ANP . . . H 3 226.039 2.766 264.01 1 189.21 ? PB ANP 1801 B 1 
HETATM 6 O O1B ANP . . . H 3 227.136 2.847 265.023 1 191.14 ? O1B ANP 1801 B 1 
HETATM 7 O O2B ANP . . . H 3 226.383 3.003 262.578 1 187.11 ? O2B ANP 1801 B 1 
HETATM 8 N N3B ANP . . . H 3 225.283 1.217 264.216 1 188.59 ? N3B ANP 1801 B 1 
HETATM 9 P PA ANP . . . H 3 224.558 5.069 263.422 1 190.52 ? PA ANP 1801 B 1 
HETATM 10 O O1A ANP . . . H 3 225.837 5.846 263.242 1 190.63 ? O1A ANP 1801 B 1 
HETATM 11 O O2A ANP . . . H 3 223.842 4.482 262.235 1 188.25 ? O2A ANP 1801 B 1 
HETATM 12 O O3A ANP . . . H 3 224.95 3.861 264.408 1 190.95 ? O3A ANP 1801 B 1 
HETATM 13 O O5' ANP . . . H 3 223.477 5.948 264.284 1 193.02 ? O5' ANP 1801 B 1 
HETATM 14 C C5' ANP . . . H 3 222.818 5.407 265.45 1 195.66 ? C5' ANP 1801 B 1 
HETATM 15 C C4' ANP . . . H 3 221.593 6.127 266.033 1 197.62 ? C4' ANP 1801 B 1 
HETATM 16 O O4' ANP . . . H 3 222.022 7.06 267.019 1 200.25 ? O4' ANP 1801 B 1 
HETATM 17 C C3' ANP . . . H 3 220.726 6.898 265.056 1 196.63 ? C3' ANP 1801 B 1 
HETATM 18 O O3' ANP . . . H 3 219.344 6.588 265.318 1 197.1 ? O3' ANP 1801 B 1 
HETATM 19 C C2' ANP . . . H 3 221.028 8.372 265.303 1 198.11 ? C2' ANP 1801 B 1 
HETATM 20 O O2' ANP . . . H 3 219.839 9.138 265.208 1 198.59 ? O2' ANP 1801 B 1 
HETATM 21 C C1' ANP . . . H 3 221.604 8.398 266.708 1 200.99 ? C1' ANP 1801 B 1 
HETATM 22 N N9 ANP . . . H 3 222.8 9.26 266.889 1 202.62 ? N9 ANP 1801 B 1 
HETATM 23 C C8 ANP . . . H 3 224.027 8.976 266.42 1 201.6 ? C8 ANP 1801 B 1 
HETATM 24 N N7 ANP . . . H 3 224.919 9.938 266.779 1 203.63 ? N7 ANP 1801 B 1 
HETATM 25 C C5 ANP . . . H 3 224.262 10.857 267.506 1 206.3 ? C5 ANP 1801 B 1 
HETATM 26 C C6 ANP . . . H 3 224.603 12.131 268.206 1 209.4 ? C6 ANP 1801 B 1 
HETATM 27 N N6 ANP . . . H 3 225.87 12.607 268.172 1 210.4 ? N6 ANP 1801 B 1 
HETATM 28 N N1 ANP . . . H 3 223.617 12.793 268.865 1 211.36 ? N1 ANP 1801 B 1 
HETATM 29 C C2 ANP . . . H 3 222.357 12.319 268.902 1 210.82 ? C2 ANP 1801 B 1 
HETATM 30 N N3 ANP . . . H 3 221.983 11.171 268.29 1 208.19 ? N3 ANP 1801 B 1 
HETATM 31 C C4 ANP . . . H 3 222.862 10.402 267.585 1 205.65 ? C4 ANP 1801 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#