data_5AKC # _model_server_result.job_id 9ym_C10UkTIYQM8UZCkfZg _model_server_result.datetime_utc '2024-12-13 00:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5akc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1801}' # _entry.id 5AKC # _exptl.entry_id 5AKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.41 _cell.angle_gamma 90 _cell.entry_id 5AKC _cell.length_a 380.63 _cell.length_b 126.46 _cell.length_c 243.35 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PQS tetrameric 4 author_and_software_defined_assembly 2 PQS tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N 1 1 E,F,G,H,O,P 2 1 I,J,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id Q _struct_conn.ptnr1_label_atom_id O1G _struct_conn.ptnr1_label_comp_id ANP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id I _struct_conn.ptnr1_auth_comp_id ANP _struct_conn.ptnr1_auth_seq_id 1801 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 670 _struct_conn.ptnr2_auth_asym_id J _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 670 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.789 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5AKC _atom_sites.fract_transf_matrix[1][1] 0.002627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ANP A 1 1801 1801 ANP ANP . N 3 ANP B 1 1801 1801 ANP ANP . O 3 ANP E 1 1801 1801 ANP ANP . P 3 ANP F 1 1801 1801 ANP ANP . Q 3 ANP I 1 1801 1801 ANP ANP . R 3 ANP J 1 1801 1801 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . M 3 458.284 17.932 300.632 1 209.18 ? PG ANP 1801 A 1 HETATM 2 O O1G ANP . . . M 3 459.217 19.064 300.362 1 211.23 ? O1G ANP 1801 A 1 HETATM 3 O O2G ANP . . . M 3 457.862 17.751 302.064 1 207.56 ? O2G ANP 1801 A 1 HETATM 4 O O3G ANP . . . M 3 457.145 17.911 299.666 1 207.04 ? O3G ANP 1801 A 1 HETATM 5 P PB ANP . . . M 3 458.761 15.237 299.43 1 212.14 ? PB ANP 1801 A 1 HETATM 6 O O1B ANP . . . M 3 459.92 14.663 298.687 1 215.77 ? O1B ANP 1801 A 1 HETATM 7 O O2B ANP . . . M 3 458.052 14.426 300.452 1 210.35 ? O2B ANP 1801 A 1 HETATM 8 N N3B ANP . . . M 3 459.365 16.595 300.283 1 212.52 ? N3B ANP 1801 A 1 HETATM 9 P PA ANP . . . M 3 456.11 15.269 298.357 1 206.55 ? PA ANP 1801 A 1 HETATM 10 O O1A ANP . . . M 3 456.115 13.76 298.472 1 207.34 ? O1A ANP 1801 A 1 HETATM 11 O O2A ANP . . . M 3 455.388 16.032 299.442 1 204 ? O2A ANP 1801 A 1 HETATM 12 O O3A ANP . . . M 3 457.67 15.701 298.339 1 209.91 ? O3A ANP 1801 A 1 HETATM 13 O O5' ANP . . . M 3 455.504 15.743 296.896 1 205.87 ? O5' ANP 1801 A 1 HETATM 14 C C5' ANP . . . M 3 454.627 16.89 296.691 1 203.64 ? C5' ANP 1801 A 1 HETATM 15 C C4' ANP . . . M 3 454.01 17.181 295.281 1 203.19 ? C4' ANP 1801 A 1 HETATM 16 O O4' ANP . . . M 3 454.466 16.352 294.189 1 205.23 ? O4' ANP 1801 A 1 HETATM 17 C C3' ANP . . . M 3 452.489 17.127 295.234 1 200.21 ? C3' ANP 1801 A 1 HETATM 18 O O3' ANP . . . M 3 451.872 18.447 295.178 1 198.68 ? O3' ANP 1801 A 1 HETATM 19 C C2' ANP . . . M 3 452.116 16.279 294.01 1 200.68 ? C2' ANP 1801 A 1 HETATM 20 O O2' ANP . . . M 3 451.335 17.09 293.108 1 199.59 ? O2' ANP 1801 A 1 HETATM 21 C C1' ANP . . . M 3 453.412 15.786 293.37 1 203.9 ? C1' ANP 1801 A 1 HETATM 22 N N9 ANP . . . M 3 453.602 14.288 293.273 1 205.1 ? N9 ANP 1801 A 1 HETATM 23 C C8 ANP . . . M 3 454.022 13.566 294.336 1 205.59 ? C8 ANP 1801 A 1 HETATM 24 N N7 ANP . . . M 3 454.181 12.233 294.037 1 207 ? N7 ANP 1801 A 1 HETATM 25 C C5 ANP . . . M 3 453.845 12.048 292.754 1 207.37 ? C5 ANP 1801 A 1 HETATM 26 C C6 ANP . . . M 3 453.807 10.863 291.856 1 208.86 ? C6 ANP 1801 A 1 HETATM 27 N N6 ANP . . . M 3 454.158 9.608 292.255 1 210.31 ? N6 ANP 1801 A 1 HETATM 28 N N1 ANP . . . M 3 453.407 11.088 290.594 1 208.89 ? N1 ANP 1801 A 1 HETATM 29 C C2 ANP . . . M 3 453.053 12.33 290.151 1 207.68 ? C2 ANP 1801 A 1 HETATM 30 N N3 ANP . . . M 3 453.087 13.451 290.927 1 206.39 ? N3 ANP 1801 A 1 HETATM 31 C C4 ANP . . . M 3 453.474 13.401 292.239 1 206.14 ? C4 ANP 1801 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 284 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #