data_5AKC # _model_server_result.job_id qFQNqZKMhwGCa0Z93KxvdA _model_server_result.datetime_utc '2024-12-11 03:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5akc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1801}' # _entry.id 5AKC # _exptl.entry_id 5AKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.41 _cell.angle_gamma 90 _cell.entry_id 5AKC _cell.length_a 380.63 _cell.length_b 126.46 _cell.length_c 243.35 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS tetrameric 4 author_and_software_defined_assembly 1 PQS tetrameric 4 author_and_software_defined_assembly 2 PQS tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,N 1 1 E,F,G,H,O,P 2 1 I,J,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id Q _struct_conn.ptnr1_label_atom_id O1G _struct_conn.ptnr1_label_comp_id ANP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id I _struct_conn.ptnr1_auth_comp_id ANP _struct_conn.ptnr1_auth_seq_id 1801 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 670 _struct_conn.ptnr2_auth_asym_id J _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 670 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.789 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5AKC _atom_sites.fract_transf_matrix[1][1] 0.002627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ANP A 1 1801 1801 ANP ANP . N 3 ANP B 1 1801 1801 ANP ANP . O 3 ANP E 1 1801 1801 ANP ANP . P 3 ANP F 1 1801 1801 ANP ANP . Q 3 ANP I 1 1801 1801 ANP ANP . R 3 ANP J 1 1801 1801 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . R 3 534.059 -29.064 268.655 1 220.11 ? PG ANP 1801 J 1 HETATM 2 O O1G ANP . . . R 3 535.017 -29.296 267.564 1 221.25 ? O1G ANP 1801 J 1 HETATM 3 O O2G ANP . . . R 3 534.663 -28.353 269.79 1 218.69 ? O2G ANP 1801 J 1 HETATM 4 O O3G ANP . . . R 3 532.782 -28.469 268.192 1 220.08 ? O3G ANP 1801 J 1 HETATM 5 P PB ANP . . . R 3 532.01 -31.188 269.309 1 221.8 ? PB ANP 1801 J 1 HETATM 6 O O1B ANP . . . R 3 532.03 -32.648 269.579 1 223.15 ? O1B ANP 1801 J 1 HETATM 7 O O2B ANP . . . R 3 531.4 -30.253 270.279 1 220.37 ? O2B ANP 1801 J 1 HETATM 8 N N3B ANP . . . R 3 533.654 -30.63 269.175 1 221.18 ? N3B ANP 1801 J 1 HETATM 9 P PA ANP . . . R 3 529.747 -30.361 267.958 1 222.67 ? PA ANP 1801 J 1 HETATM 10 O O1A ANP . . . R 3 528.878 -30.922 269.037 1 222.72 ? O1A ANP 1801 J 1 HETATM 11 O O2A ANP . . . R 3 530.011 -28.89 268.003 1 221.3 ? O2A ANP 1801 J 1 HETATM 12 O O3A ANP . . . R 3 531.183 -31.048 267.963 1 222.88 ? O3A ANP 1801 J 1 HETATM 13 O O5' ANP . . . R 3 529.065 -30.733 266.525 1 224.54 ? O5' ANP 1801 J 1 HETATM 14 C C5' ANP . . . R 3 529.842 -30.927 265.354 1 225.58 ? C5' ANP 1801 J 1 HETATM 15 C C4' ANP . . . R 3 529.072 -30.818 264.032 1 227.18 ? C4' ANP 1801 J 1 HETATM 16 O O4' ANP . . . R 3 528.26 -31.995 263.901 1 228.87 ? O4' ANP 1801 J 1 HETATM 17 C C3' ANP . . . R 3 528.162 -29.604 263.962 1 226.57 ? C3' ANP 1801 J 1 HETATM 18 O O3' ANP . . . R 3 528.248 -28.934 262.677 1 227.46 ? O3' ANP 1801 J 1 HETATM 19 C C2' ANP . . . R 3 526.778 -30.168 264.251 1 227.51 ? C2' ANP 1801 J 1 HETATM 20 O O2' ANP . . . R 3 525.807 -29.406 263.523 1 228.34 ? O2' ANP 1801 J 1 HETATM 21 C C1' ANP . . . R 3 526.864 -31.688 263.971 1 229.2 ? C1' ANP 1801 J 1 HETATM 22 N N9 ANP . . . R 3 526.15 -32.539 264.983 1 229.4 ? N9 ANP 1801 J 1 HETATM 23 C C8 ANP . . . R 3 526.354 -32.502 266.305 1 227.92 ? C8 ANP 1801 J 1 HETATM 24 N N7 ANP . . . R 3 525.543 -33.379 266.984 1 228.76 ? N7 ANP 1801 J 1 HETATM 25 C C5 ANP . . . R 3 524.8 -34.02 266.073 1 230.85 ? C5 ANP 1801 J 1 HETATM 26 C C6 ANP . . . R 3 523.747 -35.065 266.077 1 232.89 ? C6 ANP 1801 J 1 HETATM 27 N N6 ANP . . . R 3 523.325 -35.622 267.23 1 232.85 ? N6 ANP 1801 J 1 HETATM 28 N N1 ANP . . . R 3 523.223 -35.467 264.903 1 235.02 ? N1 ANP 1801 J 1 HETATM 29 C C2 ANP . . . R 3 523.631 -34.923 263.737 1 235.31 ? C2 ANP 1801 J 1 HETATM 30 N N3 ANP . . . R 3 524.578 -33.979 263.655 1 233.55 ? N3 ANP 1801 J 1 HETATM 31 C C4 ANP . . . R 3 525.2 -33.475 264.763 1 231.29 ? C4 ANP 1801 J 1 # _model_server_stats.io_time_ms 266 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 228 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #