data_5AM3 # _model_server_result.job_id jGHyQeHEVZ6oaRo6PVv41A _model_server_result.datetime_utc '2024-11-25 02:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5am3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1552}' # _entry.id 5AM3 # _exptl.entry_id 5AM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.522 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AM3 _cell.length_a 92.6 _cell.length_b 92.6 _cell.length_c 244.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.3 80.193952 40.756667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 N2 O4' _chem_comp.formula_weight 412.522 _chem_comp.id AUB _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(trans-4-{[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]dec-1-ylcarbamoyl]amino}cyclohexyl)oxy]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 AUB sing 70 n n C6 C5 AUB sing 71 n n C1 C9 AUB sing 72 n n C1 C2 AUB sing 73 n n C9 C3 AUB sing 74 n n C5 C4 AUB sing 75 n n C5 C10 AUB sing 76 n n C4 C3 AUB sing 77 n n C2 C7 AUB sing 78 n n C3 C8 AUB sing 79 n n C10 C7 AUB sing 80 n n C7 C8 AUB sing 81 n n C7 N11 AUB sing 82 n n N11 C26 AUB sing 83 n n O27 C26 AUB doub 84 n n C26 N18 AUB sing 85 n n N18 C13 AUB sing 86 n n C13 C14 AUB sing 87 n n C13 C12 AUB sing 88 n n C14 C15 AUB sing 89 n n C12 C17 AUB sing 90 n n C15 C16 AUB sing 91 n n C17 C16 AUB sing 92 n n C16 O19 AUB sing 93 n n O19 C20 AUB sing 94 n n C20 C21 AUB doub 95 n y C20 C25 AUB sing 96 n y C21 C22 AUB sing 97 n y C25 C24 AUB doub 98 n y C22 C23 AUB doub 99 n y C24 C23 AUB sing 100 n y C23 C28 AUB sing 101 n n C28 O29 AUB doub 102 n n C28 O30 AUB sing 103 n n C22 H1 AUB sing 104 n n C24 H2 AUB sing 105 n n C21 H3 AUB sing 106 n n C25 H4 AUB sing 107 n n C14 H5 AUB sing 108 n n C14 H6 AUB sing 109 n n C12 H7 AUB sing 110 n n C12 H8 AUB sing 111 n n C15 H9 AUB sing 112 n n C15 H10 AUB sing 113 n n C17 H11 AUB sing 114 n n C17 H12 AUB sing 115 n n C6 H13 AUB sing 116 n n C6 H14 AUB sing 117 n n C9 H15 AUB sing 118 n n C9 H16 AUB sing 119 n n C4 H17 AUB sing 120 n n C4 H18 AUB sing 121 n n C2 H19 AUB sing 122 n n C2 H20 AUB sing 123 n n C10 H21 AUB sing 124 n n C10 H22 AUB sing 125 n n C8 H23 AUB sing 126 n n C8 H24 AUB sing 127 n n C1 H25 AUB sing 128 n n C5 H26 AUB sing 129 n n C3 H27 AUB sing 130 n n C13 H28 AUB sing 131 n n C16 H29 AUB sing 132 n n N18 H30 AUB sing 133 n n N11 H31 AUB sing 134 n n O30 H32 AUB sing 135 n n # _atom_sites.entry_id 5AM3 _atom_sites.fract_transf_matrix[1][1] 0.010799 _atom_sites.fract_transf_matrix[1][2] 0.006235 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1548 1548 SO4 SO4 . C 3 GOL A 1 1549 1549 GOL GOL . D 4 PEG A 1 1550 1550 PEG PEG . E 4 PEG A 1 1551 1551 PEG PEG . F 5 AUB A 1 1552 1552 AUB AUB . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . G 6 HOH A 93 2093 2093 HOH HOH . G 6 HOH A 94 2094 2094 HOH HOH . G 6 HOH A 95 2095 2095 HOH HOH . G 6 HOH A 96 2096 2096 HOH HOH . G 6 HOH A 97 2097 2097 HOH HOH . G 6 HOH A 98 2098 2098 HOH HOH . G 6 HOH A 99 2099 2099 HOH HOH . G 6 HOH A 100 2100 2100 HOH HOH . G 6 HOH A 101 2101 2101 HOH HOH . G 6 HOH A 102 2102 2102 HOH HOH . G 6 HOH A 103 2103 2103 HOH HOH . G 6 HOH A 104 2104 2104 HOH HOH . G 6 HOH A 105 2105 2105 HOH HOH . G 6 HOH A 106 2106 2106 HOH HOH . G 6 HOH A 107 2107 2107 HOH HOH . G 6 HOH A 108 2108 2108 HOH HOH . G 6 HOH A 109 2109 2109 HOH HOH . G 6 HOH A 110 2110 2110 HOH HOH . G 6 HOH A 111 2111 2111 HOH HOH . G 6 HOH A 112 2112 2112 HOH HOH . G 6 HOH A 113 2113 2113 HOH HOH . G 6 HOH A 114 2114 2114 HOH HOH . G 6 HOH A 115 2115 2115 HOH HOH . G 6 HOH A 116 2116 2116 HOH HOH . G 6 HOH A 117 2117 2117 HOH HOH . G 6 HOH A 118 2118 2118 HOH HOH . G 6 HOH A 119 2119 2119 HOH HOH . G 6 HOH A 120 2120 2120 HOH HOH . G 6 HOH A 121 2121 2121 HOH HOH . G 6 HOH A 122 2122 2122 HOH HOH . G 6 HOH A 123 2123 2123 HOH HOH . G 6 HOH A 124 2124 2124 HOH HOH . G 6 HOH A 125 2125 2125 HOH HOH . G 6 HOH A 126 2126 2126 HOH HOH . G 6 HOH A 127 2127 2127 HOH HOH . G 6 HOH A 128 2128 2128 HOH HOH . G 6 HOH A 129 2129 2129 HOH HOH . G 6 HOH A 130 2130 2130 HOH HOH . G 6 HOH A 131 2131 2131 HOH HOH . G 6 HOH A 132 2132 2132 HOH HOH . G 6 HOH A 133 2133 2133 HOH HOH . G 6 HOH A 134 2134 2134 HOH HOH . G 6 HOH A 135 2135 2135 HOH HOH . G 6 HOH A 136 2136 2136 HOH HOH . G 6 HOH A 137 2137 2137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 AUB . . . F 5 16.415 9.749 7.91 1 41.42 ? C22 AUB 1552 A 1 HETATM 2 C C24 AUB . . . F 5 18.046 8.012 7.527 1 42.27 ? C24 AUB 1552 A 1 HETATM 3 C C21 AUB . . . F 5 16.858 9.87 9.212 1 41.72 ? C21 AUB 1552 A 1 HETATM 4 C C25 AUB . . . F 5 18.482 8.145 8.831 1 42.05 ? C25 AUB 1552 A 1 HETATM 5 C C23 AUB . . . F 5 17.011 8.818 7.083 1 44.36 ? C23 AUB 1552 A 1 HETATM 6 C C20 AUB . . . F 5 17.888 9.068 9.674 1 40.65 ? C20 AUB 1552 A 1 HETATM 7 C C28 AUB . . . F 5 16.514 8.707 5.701 1 49.56 ? C28 AUB 1552 A 1 HETATM 8 C C26 AUB . . . F 5 15.87 10.844 16.847 1 30.38 ? C26 AUB 1552 A 1 HETATM 9 C C14 AUB . . . F 5 15.997 10.271 13.617 1 30.47 ? C14 AUB 1552 A 1 HETATM 10 C C12 AUB . . . F 5 18.309 11.106 14.109 1 30.58 ? C12 AUB 1552 A 1 HETATM 11 C C15 AUB . . . F 5 16.562 9.342 12.558 1 31.2 ? C15 AUB 1552 A 1 HETATM 12 C C17 AUB . . . F 5 18.842 10.26 12.965 1 30.33 ? C17 AUB 1552 A 1 HETATM 13 C C6 AUB . . . F 5 13.228 10.025 20.947 1 27.67 ? C6 AUB 1552 A 1 HETATM 14 C C9 AUB . . . F 5 13.806 12.392 21.513 1 26.2 ? C9 AUB 1552 A 1 HETATM 15 C C4 AUB . . . F 5 11.776 11.909 20.142 1 28.82 ? C4 AUB 1552 A 1 HETATM 16 C C2 AUB . . . F 5 15.224 11.151 19.88 1 26.55 ? C2 AUB 1552 A 1 HETATM 17 C C10 AUB . . . F 5 13.169 10.625 18.523 1 27.23 ? C10 AUB 1552 A 1 HETATM 18 C C8 AUB . . . F 5 13.78 13.017 19.1 1 26.49 ? C8 AUB 1552 A 1 HETATM 19 C C1 AUB . . . F 5 14.38 11.014 21.162 1 27.13 ? C1 AUB 1552 A 1 HETATM 20 C C5 AUB . . . F 5 12.327 10.508 19.798 1 27.69 ? C5 AUB 1552 A 1 HETATM 21 C C3 AUB . . . F 5 12.927 12.911 20.373 1 27.42 ? C3 AUB 1552 A 1 HETATM 22 C C13 AUB . . . F 5 17.032 10.511 14.702 1 31.25 ? C13 AUB 1552 A 1 HETATM 23 C C16 AUB . . . F 5 17.778 9.986 11.901 1 33.8 ? C16 AUB 1552 A 1 HETATM 24 C C7 AUB . . . F 5 14.337 11.632 18.71 1 28.21 ? C7 AUB 1552 A 1 HETATM 25 N N18 AUB . . . F 5 16.502 11.352 15.742 1 29.73 ? N18 AUB 1552 A 1 HETATM 26 N N11 AUB . . . F 5 15.063 11.789 17.456 1 27.28 ? N11 AUB 1552 A 1 HETATM 27 O O29 AUB . . . F 5 15.544 9.305 5.256 1 51.6 ? O29 AUB 1552 A 1 HETATM 28 O O27 AUB . . . F 5 16.028 9.697 17.238 1 30.85 ? O27 AUB 1552 A 1 HETATM 29 O O30 AUB . . . F 5 17.301 7.847 5.014 1 51.52 ? O30 AUB 1552 A 1 HETATM 30 O O19 AUB . . . F 5 18.395 9.088 10.971 1 38.88 ? O19 AUB 1552 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #