data_5AM7 # _model_server_result.job_id 1XkYZirinKXFJODBZQK8Xw _model_server_result.datetime_utc '2024-11-25 02:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5am7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 5AM7 # _exptl.entry_id 5AM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.4 _cell.angle_gamma 90 _cell.entry_id 5AM7 _cell.length_a 208.606 _cell.length_b 57.835 _cell.length_c 65.622 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H21 F N6 O' _chem_comp.formula_weight 392.429 _chem_comp.id 38O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dovitinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 38O sing 1 n n C4 N5 38O sing 2 n n C3 N2 38O sing 3 n n F22 C21 38O sing 4 n n N2 C1 38O sing 5 n n N2 C7 38O sing 6 n n N5 C6 38O sing 7 n n N5 C8 38O sing 8 n n N19 C18 38O sing 9 n n C6 C7 38O sing 10 n n C9 C8 38O doub 11 n y C9 C10 38O sing 12 n y C8 C16 38O sing 13 n y C21 C23 38O doub 14 n y C21 C20 38O sing 15 n y N11 C10 38O sing 16 n y N11 C12 38O doub 17 n y C10 C14 38O doub 18 n y C23 C24 38O sing 19 n y C18 C20 38O sing 20 n n C18 C17 38O doub 21 n n C16 C15 38O doub 22 n y C20 C26 38O doub 23 n y C12 C17 38O sing 24 n n C12 N13 38O sing 25 n y C14 C15 38O sing 26 n y C14 N13 38O sing 27 n y C17 C28 38O sing 28 n n C24 C25 38O doub 29 n y C26 C25 38O sing 30 n y C26 N27 38O sing 31 n n C28 N27 38O sing 32 n n C28 O29 38O doub 33 n n C1 H1 38O sing 34 n n C1 H2 38O sing 35 n n C1 H3 38O sing 36 n n C3 H4 38O sing 37 n n C3 H5 38O sing 38 n n C4 H6 38O sing 39 n n C4 H7 38O sing 40 n n C6 H8 38O sing 41 n n C6 H9 38O sing 42 n n C7 H10 38O sing 43 n n C7 H11 38O sing 44 n n N13 H12 38O sing 45 n n C15 H13 38O sing 46 n n C16 H14 38O sing 47 n n C23 H15 38O sing 48 n n C24 H16 38O sing 49 n n C9 H18 38O sing 50 n n N19 H20 38O sing 51 n n N19 H21 38O sing 52 n n C25 H22 38O sing 53 n n N27 H23 38O sing 54 n n # _atom_sites.entry_id 5AM7 _atom_sites.fract_transf_matrix[1][1] 0.004794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 38O A 1 1000 1000 38O 38O . D 3 CL A 1 1765 1765 CL CL . E 3 CL A 1 1766 1766 CL CL . F 2 38O B 1 1000 1000 38O 38O . G 3 CL B 1 1763 1763 CL CL . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH A 58 2058 2058 HOH HOH . H 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH A 60 2060 2060 HOH HOH . H 4 HOH A 61 2061 2061 HOH HOH . H 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH A 63 2063 2063 HOH HOH . H 4 HOH A 64 2064 2064 HOH HOH . H 4 HOH A 65 2065 2065 HOH HOH . H 4 HOH A 66 2066 2066 HOH HOH . H 4 HOH A 67 2067 2067 HOH HOH . H 4 HOH A 68 2068 2068 HOH HOH . H 4 HOH A 69 2069 2069 HOH HOH . H 4 HOH A 70 2070 2070 HOH HOH . H 4 HOH A 71 2071 2071 HOH HOH . H 4 HOH A 72 2072 2072 HOH HOH . H 4 HOH A 73 2073 2073 HOH HOH . H 4 HOH A 74 2074 2074 HOH HOH . H 4 HOH A 75 2075 2075 HOH HOH . H 4 HOH A 76 2076 2076 HOH HOH . H 4 HOH A 77 2077 2077 HOH HOH . H 4 HOH A 78 2078 2078 HOH HOH . H 4 HOH A 79 2079 2079 HOH HOH . H 4 HOH A 80 2080 2080 HOH HOH . H 4 HOH A 81 2081 2081 HOH HOH . H 4 HOH A 82 2082 2082 HOH HOH . H 4 HOH A 83 2083 2083 HOH HOH . H 4 HOH A 84 2084 2084 HOH HOH . H 4 HOH A 85 2085 2085 HOH HOH . H 4 HOH A 86 2086 2086 HOH HOH . H 4 HOH A 87 2087 2087 HOH HOH . H 4 HOH A 88 2088 2088 HOH HOH . H 4 HOH A 89 2089 2089 HOH HOH . H 4 HOH A 90 2090 2090 HOH HOH . H 4 HOH A 91 2091 2091 HOH HOH . H 4 HOH A 92 2092 2092 HOH HOH . H 4 HOH A 93 2093 2093 HOH HOH . H 4 HOH A 94 2094 2094 HOH HOH . H 4 HOH A 95 2095 2095 HOH HOH . H 4 HOH A 96 2096 2096 HOH HOH . H 4 HOH A 97 2097 2097 HOH HOH . H 4 HOH A 98 2098 2098 HOH HOH . H 4 HOH A 99 2099 2099 HOH HOH . H 4 HOH A 100 2100 2100 HOH HOH . H 4 HOH A 101 2101 2101 HOH HOH . H 4 HOH A 102 2102 2102 HOH HOH . H 4 HOH A 103 2103 2103 HOH HOH . H 4 HOH A 104 2104 2104 HOH HOH . H 4 HOH A 105 2105 2105 HOH HOH . H 4 HOH A 106 2106 2106 HOH HOH . H 4 HOH A 107 2107 2107 HOH HOH . H 4 HOH A 108 2108 2108 HOH HOH . H 4 HOH A 109 2109 2109 HOH HOH . H 4 HOH A 110 2110 2110 HOH HOH . H 4 HOH A 111 2111 2111 HOH HOH . H 4 HOH A 112 2112 2112 HOH HOH . H 4 HOH A 113 2113 2113 HOH HOH . H 4 HOH A 114 2114 2114 HOH HOH . H 4 HOH A 115 2115 2115 HOH HOH . H 4 HOH A 116 2116 2116 HOH HOH . H 4 HOH A 117 2117 2117 HOH HOH . H 4 HOH A 118 2118 2118 HOH HOH . H 4 HOH A 119 2119 2119 HOH HOH . H 4 HOH A 120 2120 2120 HOH HOH . H 4 HOH A 121 2121 2121 HOH HOH . H 4 HOH A 122 2122 2122 HOH HOH . H 4 HOH A 123 2123 2123 HOH HOH . H 4 HOH A 124 2124 2124 HOH HOH . H 4 HOH A 125 2125 2125 HOH HOH . H 4 HOH A 126 2126 2126 HOH HOH . H 4 HOH A 127 2127 2127 HOH HOH . H 4 HOH A 128 2128 2128 HOH HOH . H 4 HOH A 129 2129 2129 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . I 4 HOH B 38 2038 2038 HOH HOH . I 4 HOH B 39 2039 2039 HOH HOH . I 4 HOH B 40 2040 2040 HOH HOH . I 4 HOH B 41 2041 2041 HOH HOH . I 4 HOH B 42 2042 2042 HOH HOH . I 4 HOH B 43 2043 2043 HOH HOH . I 4 HOH B 44 2044 2044 HOH HOH . I 4 HOH B 45 2045 2045 HOH HOH . I 4 HOH B 46 2046 2046 HOH HOH . I 4 HOH B 47 2047 2047 HOH HOH . I 4 HOH B 48 2048 2048 HOH HOH . I 4 HOH B 49 2049 2049 HOH HOH . I 4 HOH B 50 2050 2050 HOH HOH . I 4 HOH B 51 2051 2051 HOH HOH . I 4 HOH B 52 2052 2052 HOH HOH . I 4 HOH B 53 2053 2053 HOH HOH . I 4 HOH B 54 2054 2054 HOH HOH . I 4 HOH B 55 2055 2055 HOH HOH . I 4 HOH B 56 2056 2056 HOH HOH . I 4 HOH B 57 2057 2057 HOH HOH . I 4 HOH B 58 2058 2058 HOH HOH . I 4 HOH B 59 2059 2059 HOH HOH . I 4 HOH B 60 2060 2060 HOH HOH . I 4 HOH B 61 2061 2061 HOH HOH . I 4 HOH B 62 2062 2062 HOH HOH . I 4 HOH B 63 2063 2063 HOH HOH . I 4 HOH B 64 2064 2064 HOH HOH . I 4 HOH B 65 2065 2065 HOH HOH . I 4 HOH B 66 2066 2066 HOH HOH . I 4 HOH B 67 2067 2067 HOH HOH . I 4 HOH B 68 2068 2068 HOH HOH . I 4 HOH B 69 2069 2069 HOH HOH . I 4 HOH B 70 2070 2070 HOH HOH . I 4 HOH B 71 2071 2071 HOH HOH . I 4 HOH B 72 2072 2072 HOH HOH . I 4 HOH B 73 2073 2073 HOH HOH . I 4 HOH B 74 2074 2074 HOH HOH . I 4 HOH B 75 2075 2075 HOH HOH . I 4 HOH B 76 2076 2076 HOH HOH . I 4 HOH B 77 2077 2077 HOH HOH . I 4 HOH B 78 2078 2078 HOH HOH . I 4 HOH B 79 2079 2079 HOH HOH . I 4 HOH B 80 2080 2080 HOH HOH . I 4 HOH B 81 2081 2081 HOH HOH . I 4 HOH B 82 2082 2082 HOH HOH . I 4 HOH B 83 2083 2083 HOH HOH . I 4 HOH B 84 2084 2084 HOH HOH . I 4 HOH B 85 2085 2085 HOH HOH . I 4 HOH B 86 2086 2086 HOH HOH . I 4 HOH B 87 2087 2087 HOH HOH . I 4 HOH B 88 2088 2088 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 38O . . . C 2 221.12 2.458 31.853 1 86.37 ? C1 38O 1000 A 1 HETATM 2 C C3 38O . . . C 2 221.413 2.758 29.491 1 88.62 ? C3 38O 1000 A 1 HETATM 3 C C4 38O . . . C 2 220.923 2.301 28.123 1 79.19 ? C4 38O 1000 A 1 HETATM 4 C C6 38O . . . C 2 218.562 2.475 29.097 1 76.07 ? C6 38O 1000 A 1 HETATM 5 C C7 38O . . . C 2 219.226 2.859 30.415 1 81.42 ? C7 38O 1000 A 1 HETATM 6 C C8 38O . . . C 2 219.089 3.268 26.814 1 49.21 ? C8 38O 1000 A 1 HETATM 7 C C12 38O . . . C 2 216.912 3.786 22.921 1 34.69 ? C12 38O 1000 A 1 HETATM 8 N N13 38O . . . C 2 217.725 4.811 23.245 1 31.28 ? N13 38O 1000 A 1 HETATM 9 C C15 38O . . . C 2 219.181 5.131 25.266 1 38.63 ? C15 38O 1000 A 1 HETATM 10 C C16 38O . . . C 2 219.58 4.519 26.451 1 49.82 ? C16 38O 1000 A 1 HETATM 11 C C17 38O . . . C 2 216.074 3.623 21.703 1 26.24 ? C17 38O 1000 A 1 HETATM 12 C C18 38O . . . C 2 216.191 4.636 20.623 1 29.85 ? C18 38O 1000 A 1 HETATM 13 C C21 38O . . . C 2 215.396 5.359 18.237 1 38.9 ? C21 38O 1000 A 1 HETATM 14 C C23 38O . . . C 2 214.577 5.089 17.133 1 29.4 ? C23 38O 1000 A 1 HETATM 15 C C24 38O . . . C 2 213.721 3.983 17.136 1 37.65 ? C24 38O 1000 A 1 HETATM 16 O O29 38O . . . C 2 214.96 1.65 22.411 1 37.87 ? O29 38O 1000 A 1 HETATM 17 N N2 38O . . . C 2 220.535 2.203 30.529 1 87.34 ? N2 38O 1000 A 1 HETATM 18 N N5 38O . . . C 2 219.522 2.694 28.015 1 68.45 ? N5 38O 1000 A 1 HETATM 19 C C9 38O . . . C 2 218.182 2.583 26.006 1 41.1 ? C9 38O 1000 A 1 HETATM 20 C C10 38O . . . C 2 217.753 3.15 24.801 1 44.59 ? C10 38O 1000 A 1 HETATM 21 N N11 38O . . . C 2 216.925 2.766 23.811 1 33.45 ? N11 38O 1000 A 1 HETATM 22 C C14 38O . . . C 2 218.284 4.483 24.426 1 40.41 ? C14 38O 1000 A 1 HETATM 23 N N19 38O . . . C 2 217.049 5.669 20.756 1 41.08 ? N19 38O 1000 A 1 HETATM 24 C C20 38O . . . C 2 215.358 4.443 19.402 1 40.81 ? C20 38O 1000 A 1 HETATM 25 F F22 38O . . . C 2 216.212 6.434 18.26 1 43.72 ? F22 38O 1000 A 1 HETATM 26 C C25 38O . . . C 2 213.65 3.091 18.212 1 32.91 ? C25 38O 1000 A 1 HETATM 27 C C26 38O . . . C 2 214.437 3.282 19.352 1 29.95 ? C26 38O 1000 A 1 HETATM 28 N N27 38O . . . C 2 214.393 2.414 20.375 1 23.66 ? N27 38O 1000 A 1 HETATM 29 C C28 38O . . . C 2 215.103 2.52 21.518 1 25.07 ? C28 38O 1000 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #