data_5AN5
#
_model_server_result.job_id            G3TMGl0BJ_JklRWs0UA0eQ 
_model_server_result.datetime_utc      '2025-07-05 10:26:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5an5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1098}' 
#
_entry.id    5AN5 
#
_exptl.entry_id    5AN5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         85.59 
_cell.angle_beta          89.32 
_cell.angle_gamma         65.53 
_cell.entry_id            5AN5 
_cell.length_a            32.594 
_cell.length_b            36.203 
_cell.length_c            43.179 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AN5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,L,R,S 1 1 
B,C,I,K,M,N,T 2 1 
D,E,F,J,O,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 97 n n 
C1 C2 GOL sing 98 n n 
C1 H11 GOL sing 99 n n 
C1 H12 GOL sing 100 n n 
O1 HO1 GOL sing 101 n n 
C2 O2 GOL sing 102 n n 
C2 C3 GOL sing 103 n n 
C2 H2 GOL sing 104 n n 
O2 HO2 GOL sing 105 n n 
C3 O3 GOL sing 106 n n 
C3 H31 GOL sing 107 n n 
C3 H32 GOL sing 108 n n 
O3 HO3 GOL sing 109 n n 
#
_atom_sites.entry_id                     5AN5 
_atom_sites.fract_transf_matrix[1][1]    0.03068 
_atom_sites.fract_transf_matrix[1][2]    -0.013963 
_atom_sites.fract_transf_matrix[1][3]    0.000742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030348 
_atom_sites.fract_transf_matrix[2][3]    -0.002408 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 GOL G 1 1094 1094 GOL GOL . 
K 2 GOL J 1 1098 1098 GOL GOL . 
L 3 HOH B 1 2001 2001 HOH HOH . 
L 3 HOH B 2 2002 2002 HOH HOH . 
L 3 HOH B 3 2003 2003 HOH HOH . 
L 3 HOH B 4 2004 2004 HOH HOH . 
L 3 HOH B 5 2005 2005 HOH HOH . 
L 3 HOH B 6 2006 2006 HOH HOH . 
L 3 HOH B 7 2007 2007 HOH HOH . 
L 3 HOH B 8 2008 2008 HOH HOH . 
L 3 HOH B 9 2009 2009 HOH HOH . 
L 3 HOH B 10 2010 2010 HOH HOH . 
L 3 HOH B 11 2011 2011 HOH HOH . 
L 3 HOH B 12 2012 2012 HOH HOH . 
L 3 HOH B 13 2013 2013 HOH HOH . 
L 3 HOH B 14 2014 2014 HOH HOH . 
L 3 HOH B 15 2015 2015 HOH HOH . 
L 3 HOH B 16 2016 2016 HOH HOH . 
L 3 HOH B 17 2017 2017 HOH HOH . 
L 3 HOH B 18 2018 2018 HOH HOH . 
L 3 HOH B 19 2019 2019 HOH HOH . 
L 3 HOH B 20 2020 2020 HOH HOH . 
L 3 HOH B 21 2021 2021 HOH HOH . 
L 3 HOH B 22 2022 2022 HOH HOH . 
L 3 HOH B 23 2023 2023 HOH HOH . 
L 3 HOH B 24 2024 2024 HOH HOH . 
L 3 HOH B 25 2025 2025 HOH HOH . 
L 3 HOH B 26 2026 2026 HOH HOH . 
L 3 HOH B 27 2027 2027 HOH HOH . 
L 3 HOH B 28 2028 2028 HOH HOH . 
L 3 HOH B 29 2029 2029 HOH HOH . 
L 3 HOH B 30 2030 2030 HOH HOH . 
L 3 HOH B 31 2031 2031 HOH HOH . 
L 3 HOH B 32 2032 2032 HOH HOH . 
L 3 HOH B 33 2033 2033 HOH HOH . 
M 3 HOH C 1 2001 2001 HOH HOH . 
M 3 HOH C 2 2002 2002 HOH HOH . 
M 3 HOH C 3 2003 2003 HOH HOH . 
M 3 HOH C 4 2004 2004 HOH HOH . 
M 3 HOH C 5 2005 2005 HOH HOH . 
M 3 HOH C 6 2006 2006 HOH HOH . 
M 3 HOH C 7 2007 2007 HOH HOH . 
M 3 HOH C 8 2008 2008 HOH HOH . 
M 3 HOH C 9 2009 2009 HOH HOH . 
M 3 HOH C 10 2010 2010 HOH HOH . 
M 3 HOH C 11 2011 2011 HOH HOH . 
M 3 HOH C 12 2012 2012 HOH HOH . 
M 3 HOH C 13 2013 2013 HOH HOH . 
M 3 HOH C 14 2014 2014 HOH HOH . 
M 3 HOH C 15 2015 2015 HOH HOH . 
M 3 HOH C 16 2016 2016 HOH HOH . 
M 3 HOH C 17 2017 2017 HOH HOH . 
M 3 HOH C 18 2018 2018 HOH HOH . 
M 3 HOH C 19 2019 2019 HOH HOH . 
M 3 HOH C 20 2020 2020 HOH HOH . 
M 3 HOH C 21 2021 2021 HOH HOH . 
M 3 HOH C 22 2022 2022 HOH HOH . 
M 3 HOH C 23 2023 2023 HOH HOH . 
M 3 HOH C 24 2024 2024 HOH HOH . 
M 3 HOH C 25 2025 2025 HOH HOH . 
M 3 HOH C 26 2026 2026 HOH HOH . 
N 3 HOH D 1 2001 2001 HOH HOH . 
N 3 HOH D 2 2002 2002 HOH HOH . 
N 3 HOH D 3 2003 2003 HOH HOH . 
N 3 HOH D 4 2004 2004 HOH HOH . 
N 3 HOH D 5 2005 2005 HOH HOH . 
N 3 HOH D 6 2006 2006 HOH HOH . 
N 3 HOH D 7 2007 2007 HOH HOH . 
N 3 HOH D 8 2008 2008 HOH HOH . 
N 3 HOH D 9 2009 2009 HOH HOH . 
N 3 HOH D 10 2010 2010 HOH HOH . 
N 3 HOH D 11 2011 2011 HOH HOH . 
N 3 HOH D 12 2012 2012 HOH HOH . 
N 3 HOH D 13 2013 2013 HOH HOH . 
N 3 HOH D 14 2014 2014 HOH HOH . 
N 3 HOH D 15 2015 2015 HOH HOH . 
N 3 HOH D 16 2016 2016 HOH HOH . 
N 3 HOH D 17 2017 2017 HOH HOH . 
N 3 HOH D 18 2018 2018 HOH HOH . 
N 3 HOH D 19 2019 2019 HOH HOH . 
N 3 HOH D 20 2020 2020 HOH HOH . 
N 3 HOH D 21 2021 2021 HOH HOH . 
N 3 HOH D 22 2022 2022 HOH HOH . 
N 3 HOH D 23 2023 2023 HOH HOH . 
N 3 HOH D 24 2024 2024 HOH HOH . 
N 3 HOH D 25 2025 2025 HOH HOH . 
N 3 HOH D 26 2026 2026 HOH HOH . 
N 3 HOH D 27 2027 2027 HOH HOH . 
N 3 HOH D 28 2028 2028 HOH HOH . 
N 3 HOH D 29 2029 2029 HOH HOH . 
N 3 HOH D 30 2030 2030 HOH HOH . 
N 3 HOH D 31 2031 2031 HOH HOH . 
O 3 HOH E 1 2001 2001 HOH HOH . 
O 3 HOH E 2 2002 2002 HOH HOH . 
O 3 HOH E 3 2003 2003 HOH HOH . 
O 3 HOH E 4 2004 2004 HOH HOH . 
O 3 HOH E 5 2005 2005 HOH HOH . 
O 3 HOH E 6 2006 2006 HOH HOH . 
O 3 HOH E 7 2007 2007 HOH HOH . 
O 3 HOH E 8 2008 2008 HOH HOH . 
O 3 HOH E 9 2009 2009 HOH HOH . 
O 3 HOH E 10 2010 2010 HOH HOH . 
O 3 HOH E 11 2011 2011 HOH HOH . 
O 3 HOH E 12 2012 2012 HOH HOH . 
O 3 HOH E 13 2013 2013 HOH HOH . 
O 3 HOH E 14 2014 2014 HOH HOH . 
O 3 HOH E 15 2015 2015 HOH HOH . 
O 3 HOH E 16 2016 2016 HOH HOH . 
O 3 HOH E 17 2017 2017 HOH HOH . 
O 3 HOH E 18 2018 2018 HOH HOH . 
O 3 HOH E 19 2019 2019 HOH HOH . 
O 3 HOH E 20 2020 2020 HOH HOH . 
O 3 HOH E 21 2021 2021 HOH HOH . 
O 3 HOH E 22 2022 2022 HOH HOH . 
O 3 HOH E 23 2023 2023 HOH HOH . 
O 3 HOH E 24 2024 2024 HOH HOH . 
O 3 HOH E 25 2025 2025 HOH HOH . 
O 3 HOH E 26 2026 2026 HOH HOH . 
O 3 HOH E 27 2027 2027 HOH HOH . 
O 3 HOH E 28 2028 2028 HOH HOH . 
O 3 HOH E 29 2029 2029 HOH HOH . 
O 3 HOH E 30 2030 2030 HOH HOH . 
O 3 HOH E 31 2031 2031 HOH HOH . 
O 3 HOH E 32 2032 2032 HOH HOH . 
O 3 HOH E 33 2033 2033 HOH HOH . 
P 3 HOH F 1 2001 2001 HOH HOH . 
P 3 HOH F 2 2002 2002 HOH HOH . 
P 3 HOH F 3 2003 2003 HOH HOH . 
P 3 HOH F 4 2004 2004 HOH HOH . 
P 3 HOH F 5 2005 2005 HOH HOH . 
P 3 HOH F 6 2006 2006 HOH HOH . 
P 3 HOH F 7 2007 2007 HOH HOH . 
P 3 HOH F 8 2008 2008 HOH HOH . 
P 3 HOH F 9 2009 2009 HOH HOH . 
P 3 HOH F 10 2010 2010 HOH HOH . 
P 3 HOH F 11 2011 2011 HOH HOH . 
P 3 HOH F 12 2012 2012 HOH HOH . 
P 3 HOH F 13 2013 2013 HOH HOH . 
P 3 HOH F 14 2014 2014 HOH HOH . 
P 3 HOH F 15 2015 2015 HOH HOH . 
P 3 HOH F 16 2016 2016 HOH HOH . 
P 3 HOH F 17 2017 2017 HOH HOH . 
P 3 HOH F 18 2018 2018 HOH HOH . 
P 3 HOH F 19 2019 2019 HOH HOH . 
P 3 HOH F 20 2020 2020 HOH HOH . 
P 3 HOH F 21 2021 2021 HOH HOH . 
P 3 HOH F 22 2022 2022 HOH HOH . 
P 3 HOH F 23 2023 2023 HOH HOH . 
P 3 HOH F 24 2024 2024 HOH HOH . 
P 3 HOH F 25 2025 2025 HOH HOH . 
P 3 HOH F 26 2026 2026 HOH HOH . 
Q 3 HOH G 1 2001 2001 HOH HOH . 
Q 3 HOH G 2 2002 2002 HOH HOH . 
Q 3 HOH G 3 2003 2003 HOH HOH . 
Q 3 HOH G 4 2004 2004 HOH HOH . 
Q 3 HOH G 5 2005 2005 HOH HOH . 
Q 3 HOH G 6 2006 2006 HOH HOH . 
Q 3 HOH G 7 2007 2007 HOH HOH . 
Q 3 HOH G 8 2008 2008 HOH HOH . 
Q 3 HOH G 9 2009 2009 HOH HOH . 
Q 3 HOH G 10 2010 2010 HOH HOH . 
Q 3 HOH G 11 2011 2011 HOH HOH . 
Q 3 HOH G 12 2012 2012 HOH HOH . 
Q 3 HOH G 13 2013 2013 HOH HOH . 
Q 3 HOH G 14 2014 2014 HOH HOH . 
Q 3 HOH G 15 2015 2015 HOH HOH . 
Q 3 HOH G 16 2016 2016 HOH HOH . 
Q 3 HOH G 17 2017 2017 HOH HOH . 
Q 3 HOH G 18 2018 2018 HOH HOH . 
Q 3 HOH G 19 2019 2019 HOH HOH . 
Q 3 HOH G 20 2020 2020 HOH HOH . 
Q 3 HOH G 21 2021 2021 HOH HOH . 
R 3 HOH H 1 2001 2001 HOH HOH . 
R 3 HOH H 2 2002 2002 HOH HOH . 
R 3 HOH H 3 2003 2003 HOH HOH . 
R 3 HOH H 4 2004 2004 HOH HOH . 
R 3 HOH H 5 2005 2005 HOH HOH . 
R 3 HOH H 6 2006 2006 HOH HOH . 
R 3 HOH H 7 2007 2007 HOH HOH . 
R 3 HOH H 8 2008 2008 HOH HOH . 
R 3 HOH H 9 2009 2009 HOH HOH . 
R 3 HOH H 10 2010 2010 HOH HOH . 
R 3 HOH H 11 2011 2011 HOH HOH . 
R 3 HOH H 12 2012 2012 HOH HOH . 
R 3 HOH H 13 2013 2013 HOH HOH . 
R 3 HOH H 14 2014 2014 HOH HOH . 
R 3 HOH H 15 2015 2015 HOH HOH . 
R 3 HOH H 16 2016 2016 HOH HOH . 
R 3 HOH H 17 2017 2017 HOH HOH . 
R 3 HOH H 18 2018 2018 HOH HOH . 
R 3 HOH H 19 2019 2019 HOH HOH . 
R 3 HOH H 20 2020 2020 HOH HOH . 
R 3 HOH H 21 2021 2021 HOH HOH . 
R 3 HOH H 22 2022 2022 HOH HOH . 
R 3 HOH H 23 2023 2023 HOH HOH . 
R 3 HOH H 24 2024 2024 HOH HOH . 
R 3 HOH H 25 2025 2025 HOH HOH . 
R 3 HOH H 26 2026 2026 HOH HOH . 
S 3 HOH I 1 2001 2001 HOH HOH . 
S 3 HOH I 2 2002 2002 HOH HOH . 
S 3 HOH I 3 2003 2003 HOH HOH . 
S 3 HOH I 4 2004 2004 HOH HOH . 
S 3 HOH I 5 2005 2005 HOH HOH . 
S 3 HOH I 6 2006 2006 HOH HOH . 
S 3 HOH I 7 2007 2007 HOH HOH . 
S 3 HOH I 8 2008 2008 HOH HOH . 
S 3 HOH I 9 2009 2009 HOH HOH . 
S 3 HOH I 10 2010 2010 HOH HOH . 
S 3 HOH I 11 2011 2011 HOH HOH . 
S 3 HOH I 12 2012 2012 HOH HOH . 
S 3 HOH I 13 2013 2013 HOH HOH . 
S 3 HOH I 14 2014 2014 HOH HOH . 
S 3 HOH I 15 2015 2015 HOH HOH . 
S 3 HOH I 16 2016 2016 HOH HOH . 
S 3 HOH I 17 2017 2017 HOH HOH . 
T 3 HOH J 1 2001 2001 HOH HOH . 
T 3 HOH J 2 2002 2002 HOH HOH . 
T 3 HOH J 3 2003 2003 HOH HOH . 
T 3 HOH J 4 2004 2004 HOH HOH . 
T 3 HOH J 5 2005 2005 HOH HOH . 
T 3 HOH J 6 2006 2006 HOH HOH . 
T 3 HOH J 7 2007 2007 HOH HOH . 
T 3 HOH J 8 2008 2008 HOH HOH . 
T 3 HOH J 9 2009 2009 HOH HOH . 
T 3 HOH J 10 2010 2010 HOH HOH . 
T 3 HOH J 11 2011 2011 HOH HOH . 
T 3 HOH J 12 2012 2012 HOH HOH . 
T 3 HOH J 13 2013 2013 HOH HOH . 
T 3 HOH J 14 2014 2014 HOH HOH . 
T 3 HOH J 15 2015 2015 HOH HOH . 
T 3 HOH J 16 2016 2016 HOH HOH . 
T 3 HOH J 17 2017 2017 HOH HOH . 
T 3 HOH J 18 2018 2018 HOH HOH . 
T 3 HOH J 19 2019 2019 HOH HOH . 
T 3 HOH J 20 2020 2020 HOH HOH . 
T 3 HOH J 21 2021 2021 HOH HOH . 
T 3 HOH J 22 2022 2022 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 2 24.491 65.273 4.242 1 30.46 ? C1 GOL 1098 J 1 
HETATM 2 O O1 GOL . . . K 2 25.024 66.466 4.777 1 49.12 ? O1 GOL 1098 J 1 
HETATM 3 C C2 GOL . . . K 2 23.915 64.376 5.341 1 13.19 ? C2 GOL 1098 J 1 
HETATM 4 O O2 GOL . . . K 2 23.463 63.18 4.747 1 63.56 ? O2 GOL 1098 J 1 
HETATM 5 C C3 GOL . . . K 2 22.745 65.095 5.996 1 34.97 ? C3 GOL 1098 J 1 
HETATM 6 O O3 GOL . . . K 2 21.538 64.432 5.695 1 49.25 ? O3 GOL 1098 J 1 
HETATM 7 H H11 GOL . . . K 2 25.275 64.734 3.709 1 36.56 ? H11 GOL 1098 J 1 
HETATM 8 H H12 GOL . . . K 2 23.707 65.516 3.525 1 36.56 ? H12 GOL 1098 J 1 
HETATM 9 H HO1 GOL . . . K 2 25.081 67.143 4.071 1 58.94 ? HO1 GOL 1098 J 1 
HETATM 10 H H2 GOL . . . K 2 24.683 64.171 6.087 1 15.83 ? H2 GOL 1098 J 1 
HETATM 11 H HO2 GOL . . . K 2 22.779 63.387 4.076 1 76.27 ? HO2 GOL 1098 J 1 
HETATM 12 H H31 GOL . . . K 2 22.698 66.122 5.635 1 41.97 ? H31 GOL 1098 J 1 
HETATM 13 H H32 GOL . . . K 2 22.889 65.121 7.076 1 41.97 ? H32 GOL 1098 J 1 
HETATM 14 H HO3 GOL . . . K 2 20.8 64.863 6.175 1 59.11 ? HO3 GOL 1098 J 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           1016 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#