data_5AN6 # _model_server_result.job_id kDuzfLJZ_Cx26yWR65DmOg _model_server_result.datetime_utc '2024-11-22 16:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5an6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1130}' # _entry.id 5AN6 # _exptl.entry_id 5AN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AN6 _cell.length_a 77 _cell.length_b 77 _cell.length_c 160 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,E,F,G,H,I,J,L,M 1 1 A,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 160 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 7 A ASP 12 4_656 H CD CD . B CD 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc2 A OD1 ASP 7 A ASP 12 4_656 H CD CD . B CD 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 A OE1 GLU 83 A GLU 88 1_555 G CD CD . B CD 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc4 A OE2 GLU 83 A GLU 88 1_555 G CD CD . B CD 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc5 A OE1 GLU 90 A GLU 95 4_556 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc6 A OE2 GLU 90 A GLU 95 4_556 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc7 K O HOH . A HOH 2004 4_556 G CD CD . B CD 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc8 K O HOH . A HOH 2027 4_556 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc9 B OE1 GLU 83 B GLU 88 1_555 D CD CD . B CD 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc10 B OE2 GLU 83 B GLU 88 1_555 D CD CD . B CD 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 B OE1 GLU 90 B GLU 95 1_555 G CD CD . B CD 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc12 B OE2 GLU 90 B GLU 95 1_555 G CD CD . B CD 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc13 D CD CD . B CD 1129 1_555 L O HOH . B HOH 2040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc14 D CD CD . B CD 1129 1_555 C OE1 GLU 90 C GLU 95 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc15 D CD CD . B CD 1129 1_555 C OE2 GLU 90 C GLU 95 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc16 E CD CD . B CD 1130 1_555 L O HOH . B HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc17 E CD CD . B CD 1130 1_555 L O HOH . B HOH 2041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc18 F CD CD . B CD 1131 1_555 L O HOH . B HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc19 F CD CD . B CD 1131 1_555 L O HOH . B HOH 2042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc20 G CD CD . B CD 1132 1_555 L O HOH . B HOH 2027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc21 H CD CD . B CD 1133 1_555 L O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc22 L O HOH . B HOH 2008 1_555 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc23 C OD1 ASP 54 C ASP 59 1_555 I CD CD . C CD 1129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc24 C OE2 GLU 83 C GLU 88 1_555 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc25 C OE1 GLU 83 C GLU 88 1_555 J CD CD . C CD 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc26 I CD CD . C CD 1129 1_555 M O HOH . C HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc27 I CD CD . C CD 1129 1_555 M O HOH . C HOH 2031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.227 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5AN6 _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0.007498 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CD B 1 1129 1129 CD CD . E 2 CD B 1 1130 1130 CD CD . F 2 CD B 1 1131 1131 CD CD . G 2 CD B 1 1132 1132 CD CD . H 2 CD B 1 1133 1133 CD CD . I 2 CD C 1 1129 1129 CD CD . J 2 CD C 1 1130 1130 CD CD . K 3 HOH A 1 2001 2001 HOH HOH . K 3 HOH A 2 2002 2002 HOH HOH . K 3 HOH A 3 2003 2003 HOH HOH . K 3 HOH A 4 2004 2004 HOH HOH . K 3 HOH A 5 2005 2005 HOH HOH . K 3 HOH A 6 2006 2006 HOH HOH . K 3 HOH A 7 2007 2007 HOH HOH . K 3 HOH A 8 2008 2008 HOH HOH . K 3 HOH A 9 2009 2009 HOH HOH . K 3 HOH A 10 2010 2010 HOH HOH . K 3 HOH A 11 2011 2011 HOH HOH . K 3 HOH A 12 2012 2012 HOH HOH . K 3 HOH A 13 2013 2013 HOH HOH . K 3 HOH A 14 2014 2014 HOH HOH . K 3 HOH A 15 2015 2015 HOH HOH . K 3 HOH A 16 2016 2016 HOH HOH . K 3 HOH A 17 2017 2017 HOH HOH . K 3 HOH A 18 2018 2018 HOH HOH . K 3 HOH A 19 2019 2019 HOH HOH . K 3 HOH A 20 2020 2020 HOH HOH . K 3 HOH A 21 2021 2021 HOH HOH . K 3 HOH A 22 2022 2022 HOH HOH . K 3 HOH A 23 2023 2023 HOH HOH . K 3 HOH A 24 2024 2024 HOH HOH . K 3 HOH A 25 2025 2025 HOH HOH . K 3 HOH A 26 2026 2026 HOH HOH . K 3 HOH A 27 2027 2027 HOH HOH . K 3 HOH A 28 2028 2028 HOH HOH . K 3 HOH A 29 2029 2029 HOH HOH . K 3 HOH A 30 2030 2030 HOH HOH . K 3 HOH A 31 2031 2031 HOH HOH . K 3 HOH A 32 2032 2032 HOH HOH . K 3 HOH A 33 2033 2033 HOH HOH . K 3 HOH A 34 2034 2034 HOH HOH . K 3 HOH A 35 2035 2035 HOH HOH . K 3 HOH A 36 2036 2036 HOH HOH . L 3 HOH B 1 2001 2001 HOH HOH . L 3 HOH B 2 2002 2002 HOH HOH . L 3 HOH B 3 2003 2003 HOH HOH . L 3 HOH B 4 2004 2004 HOH HOH . L 3 HOH B 5 2005 2005 HOH HOH . L 3 HOH B 6 2006 2006 HOH HOH . L 3 HOH B 7 2007 2007 HOH HOH . L 3 HOH B 8 2008 2008 HOH HOH . L 3 HOH B 9 2009 2009 HOH HOH . L 3 HOH B 10 2010 2010 HOH HOH . L 3 HOH B 11 2011 2011 HOH HOH . L 3 HOH B 12 2012 2012 HOH HOH . L 3 HOH B 13 2013 2013 HOH HOH . L 3 HOH B 14 2014 2014 HOH HOH . L 3 HOH B 15 2015 2015 HOH HOH . L 3 HOH B 16 2016 2016 HOH HOH . L 3 HOH B 17 2017 2017 HOH HOH . L 3 HOH B 18 2018 2018 HOH HOH . L 3 HOH B 19 2019 2019 HOH HOH . L 3 HOH B 20 2020 2020 HOH HOH . L 3 HOH B 21 2021 2021 HOH HOH . L 3 HOH B 22 2022 2022 HOH HOH . L 3 HOH B 23 2023 2023 HOH HOH . L 3 HOH B 24 2024 2024 HOH HOH . L 3 HOH B 25 2025 2025 HOH HOH . L 3 HOH B 26 2026 2026 HOH HOH . L 3 HOH B 27 2027 2027 HOH HOH . L 3 HOH B 28 2028 2028 HOH HOH . L 3 HOH B 29 2029 2029 HOH HOH . L 3 HOH B 30 2030 2030 HOH HOH . L 3 HOH B 31 2031 2031 HOH HOH . L 3 HOH B 32 2032 2032 HOH HOH . L 3 HOH B 33 2033 2033 HOH HOH . L 3 HOH B 34 2034 2034 HOH HOH . L 3 HOH B 35 2035 2035 HOH HOH . L 3 HOH B 36 2036 2036 HOH HOH . L 3 HOH B 37 2037 2037 HOH HOH . L 3 HOH B 38 2038 2038 HOH HOH . L 3 HOH B 39 2039 2039 HOH HOH . L 3 HOH B 40 2040 2040 HOH HOH . L 3 HOH B 41 2041 2041 HOH HOH . L 3 HOH B 42 2042 2042 HOH HOH . M 3 HOH C 1 2001 2001 HOH HOH . M 3 HOH C 2 2002 2002 HOH HOH . M 3 HOH C 3 2003 2003 HOH HOH . M 3 HOH C 4 2004 2004 HOH HOH . M 3 HOH C 5 2005 2005 HOH HOH . M 3 HOH C 6 2006 2006 HOH HOH . M 3 HOH C 7 2007 2007 HOH HOH . M 3 HOH C 8 2008 2008 HOH HOH . M 3 HOH C 9 2009 2009 HOH HOH . M 3 HOH C 10 2010 2010 HOH HOH . M 3 HOH C 11 2011 2011 HOH HOH . M 3 HOH C 12 2012 2012 HOH HOH . M 3 HOH C 13 2013 2013 HOH HOH . M 3 HOH C 14 2014 2014 HOH HOH . M 3 HOH C 15 2015 2015 HOH HOH . M 3 HOH C 16 2016 2016 HOH HOH . M 3 HOH C 17 2017 2017 HOH HOH . M 3 HOH C 18 2018 2018 HOH HOH . M 3 HOH C 19 2019 2019 HOH HOH . M 3 HOH C 20 2020 2020 HOH HOH . M 3 HOH C 21 2021 2021 HOH HOH . M 3 HOH C 22 2022 2022 HOH HOH . M 3 HOH C 23 2023 2023 HOH HOH . M 3 HOH C 24 2024 2024 HOH HOH . M 3 HOH C 25 2025 2025 HOH HOH . M 3 HOH C 26 2026 2026 HOH HOH . M 3 HOH C 27 2027 2027 HOH HOH . M 3 HOH C 28 2028 2028 HOH HOH . M 3 HOH C 29 2029 2029 HOH HOH . M 3 HOH C 30 2030 2030 HOH HOH . M 3 HOH C 31 2031 2031 HOH HOH . M 3 HOH C 32 2032 2032 HOH HOH . M 3 HOH C 33 2033 2033 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.696 _atom_site.Cartn_y 42.213 _atom_site.Cartn_z 73.12 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1130 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #