data_5ANL # _model_server_result.job_id qMuyYm4X5VkQQ9TFX5bIIA _model_server_result.datetime_utc '2024-11-28 03:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5anl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1870}' # _entry.id 5ANL # _exptl.entry_id 5ANL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.401 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8S)-2-(morpholin-4-yl)-9-[2-(propan-2-yloxy)ethyl]-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ANL _cell.length_a 88.215 _cell.length_b 145.763 _cell.length_c 61.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ANL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H25 F3 N4 O3' _chem_comp.formula_weight 390.401 _chem_comp.id RBQ _chem_comp.mon_nstd_flag . _chem_comp.name (8S)-2-(morpholin-4-yl)-9-[2-(propan-2-yloxy)ethyl]-8-(trifluoromethyl)-6,7,8,9-tetrahydro-4H-pyrimido[1,2-a]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 RBQ doub 277 n n C1 N3 RBQ sing 278 n n C1 N5 RBQ sing 279 n n N2 C4 RBQ sing 280 n n N3 C6 RBQ sing 281 n n N3 C11 RBQ sing 282 n n C4 C7 RBQ doub 283 n n C4 N10 RBQ sing 284 n n N5 C8 RBQ sing 285 n n N5 C18 RBQ sing 286 n n C6 C7 RBQ sing 287 n n C6 O13 RBQ doub 288 n n C8 C9 RBQ sing 289 n n C8 C12 RBQ sing 290 n n C9 F14 RBQ sing 291 n n C9 F15 RBQ sing 292 n n C9 F16 RBQ sing 293 n n N10 C19 RBQ sing 294 n n N10 C20 RBQ sing 295 n n C11 C12 RBQ sing 296 n n O17 C23 RBQ sing 297 n n O17 C24 RBQ sing 298 n n C18 C21 RBQ sing 299 n n C19 C24 RBQ sing 300 n n C20 C23 RBQ sing 301 n n C21 O22 RBQ sing 302 n n O22 C25 RBQ sing 303 n n C25 C26 RBQ sing 304 n n C25 C27 RBQ sing 305 n n C11 H111 RBQ sing 306 n n C11 H112 RBQ sing 307 n n C7 H7 RBQ sing 308 n n C8 H8 RBQ sing 309 n n C18 H181 RBQ sing 310 n n C18 H182 RBQ sing 311 n n C12 H121 RBQ sing 312 n n C12 H122 RBQ sing 313 n n C19 H191 RBQ sing 314 n n C19 H192 RBQ sing 315 n n C20 H201 RBQ sing 316 n n C20 H202 RBQ sing 317 n n C23 H231 RBQ sing 318 n n C23 H232 RBQ sing 319 n n C24 H241 RBQ sing 320 n n C24 H242 RBQ sing 321 n n C21 H211 RBQ sing 322 n n C21 H212 RBQ sing 323 n n C25 H25 RBQ sing 324 n n C26 H261 RBQ sing 325 n n C26 H262 RBQ sing 326 n n C26 H263 RBQ sing 327 n n C27 H271 RBQ sing 328 n n C27 H272 RBQ sing 329 n n C27 H273 RBQ sing 330 n n # _atom_sites.entry_id 5ANL _atom_sites.fract_transf_matrix[1][1] 0.011336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBQ A 1 1870 1870 RBQ RBQ . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RBQ . . . B 2 25.313 -16.29 22.957 1 33.45 ? C1 RBQ 1870 A 1 HETATM 2 N N2 RBQ . . . B 2 25.798 -15.098 22.654 1 30.24 ? N2 RBQ 1870 A 1 HETATM 3 N N3 RBQ . . . B 2 26.08 -17.43 23.07 1 32.8 ? N3 RBQ 1870 A 1 HETATM 4 C C4 RBQ . . . B 2 27.135 -15.024 22.423 1 29.78 ? C4 RBQ 1870 A 1 HETATM 5 N N5 RBQ . . . B 2 23.969 -16.378 23.209 1 37.21 ? N5 RBQ 1870 A 1 HETATM 6 C C6 RBQ . . . B 2 27.47 -17.382 22.865 1 34.37 ? C6 RBQ 1870 A 1 HETATM 7 C C7 RBQ . . . B 2 27.969 -16.124 22.527 1 31.31 ? C7 RBQ 1870 A 1 HETATM 8 C C8 RBQ . . . B 2 23.282 -17.606 23.648 1 36.24 ? C8 RBQ 1870 A 1 HETATM 9 C C9 RBQ . . . B 2 23.146 -17.542 25.155 1 39.69 ? C9 RBQ 1870 A 1 HETATM 10 N N10 RBQ . . . B 2 27.578 -13.8 22.009 1 28.9 ? N10 RBQ 1870 A 1 HETATM 11 C C11 RBQ . . . B 2 25.51 -18.745 23.417 1 33.44 ? C11 RBQ 1870 A 1 HETATM 12 C C12 RBQ . . . B 2 24.006 -18.858 23.175 1 35.06 ? C12 RBQ 1870 A 1 HETATM 13 O O13 RBQ . . . B 2 28.157 -18.405 22.996 1 39.53 ? O13 RBQ 1870 A 1 HETATM 14 F F14 RBQ . . . B 2 24.333 -17.523 25.754 1 40.46 ? F14 RBQ 1870 A 1 HETATM 15 F F15 RBQ . . . B 2 22.5 -16.437 25.531 1 37.93 ? F15 RBQ 1870 A 1 HETATM 16 F F16 RBQ . . . B 2 22.478 -18.581 25.665 1 43.09 ? F16 RBQ 1870 A 1 HETATM 17 O O17 RBQ . . . B 2 28.546 -11.235 21.332 1 32.82 ? O17 RBQ 1870 A 1 HETATM 18 C C18 RBQ . . . B 2 23.091 -15.229 23.007 1 42.91 ? C18 RBQ 1870 A 1 HETATM 19 C C19 RBQ . . . B 2 28.97 -13.417 22.293 1 28.64 ? C19 RBQ 1870 A 1 HETATM 20 C C20 RBQ . . . B 2 26.669 -12.654 21.949 1 29.76 ? C20 RBQ 1870 A 1 HETATM 21 C C21 RBQ . . . B 2 22.227 -15.608 21.843 1 49.27 ? C21 RBQ 1870 A 1 HETATM 22 O O22 RBQ . . . B 2 22.394 -14.468 21.005 1 58.17 ? O22 RBQ 1870 A 1 HETATM 23 C C23 RBQ . . . B 2 27.212 -11.617 21.002 1 30.54 ? C23 RBQ 1870 A 1 HETATM 24 C C24 RBQ . . . B 2 29.419 -12.371 21.325 1 29.94 ? C24 RBQ 1870 A 1 HETATM 25 C C25 RBQ . . . B 2 21.361 -13.509 21.063 1 61.83 ? C25 RBQ 1870 A 1 HETATM 26 C C26 RBQ . . . B 2 20.365 -14.07 20.056 1 60.27 ? C26 RBQ 1870 A 1 HETATM 27 C C27 RBQ . . . B 2 21.964 -12.151 20.711 1 58.47 ? C27 RBQ 1870 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #