data_5AO2
#
_model_server_result.job_id            1cfsn42CLNPc6J066m8sFg 
_model_server_result.datetime_utc      '2024-12-03 17:30:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ao2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1583}' 
#
_entry.id    5AO2 
#
_exptl.entry_id    5AO2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.79 
_cell.angle_gamma         90 
_cell.entry_id            5AO2 
_cell.length_a            69.706 
_cell.length_b            199.32 
_cell.length_c            81.804 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AO2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        'PQS PISA' 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 249 A CYS 341 1_555 A SG CYS 258 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 249 B CYS 341 1_555 B SG CYS 258 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 C SG CYS 249 C CYS 341 1_555 C SG CYS 258 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 249 D CYS 341 1_555 D SG CYS 258 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A NE2 HIS 75 A HIS 167 1_555 E FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc2 A NE2 HIS 114 A HIS 206 1_555 E FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc3 A OD2 ASP 115 A ASP 207 1_555 E FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc4 A OD1 ASP 219 A ASP 311 1_555 E FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc5 E FE FE . A FE 1001 1_555 M O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc6 B NE2 HIS 75 B HIS 167 1_555 G FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc7 B NE2 HIS 114 B HIS 206 1_555 G FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc8 B OD2 ASP 115 B ASP 207 1_555 G FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc9 B OD1 ASP 219 B ASP 311 1_555 G FE FE . B FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc10 G FE FE . B FE 1001 1_555 N O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc11 C NE2 HIS 75 C HIS 167 1_555 I FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc12 C NE2 HIS 114 C HIS 206 1_555 I FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc13 C OD2 ASP 115 C ASP 207 1_555 I FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc14 C OD1 ASP 219 C ASP 311 1_555 I FE FE . C FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc15 D NE2 HIS 75 D HIS 167 1_555 L FE FE . D FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc16 D NE2 HIS 114 D HIS 206 1_555 L FE FE . D FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc17 D OD2 ASP 115 D ASP 207 1_555 L FE FE . D FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc18 D OD1 ASP 219 D ASP 311 1_555 L FE FE . D FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                DGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DGT sing 83 n n 
PG O2G DGT sing 84 n n 
O1G HO1G DGT sing 85 n n 
O2G HO2G DGT sing 86 n n 
O3G PG DGT doub 87 n n 
O3B PG DGT sing 88 n n 
PB O3B DGT sing 89 n n 
PB O1B DGT sing 90 n n 
PB O3A DGT sing 91 n n 
O1B HO1B DGT sing 92 n n 
O2B PB DGT doub 93 n n 
PA O3A DGT sing 94 n n 
PA O1A DGT sing 95 n n 
O1A HO1A DGT sing 96 n n 
O2A PA DGT doub 97 n n 
O5' PA DGT sing 98 n n 
O5' C5' DGT sing 99 n n 
C5' H5' DGT sing 100 n n 
C5' "H5'A" DGT sing 101 n n 
C4' C5' DGT sing 102 n n 
C4' H4' DGT sing 103 n n 
O4' C4' DGT sing 104 n n 
C3' C4' DGT sing 105 n n 
C3' O3' DGT sing 106 n n 
C3' H3' DGT sing 107 n n 
O3' HO3' DGT sing 108 n n 
C2' C3' DGT sing 109 n n 
C2' C1' DGT sing 110 n n 
C2' H2' DGT sing 111 n n 
C2' "H2'A" DGT sing 112 n n 
C1' O4' DGT sing 113 n n 
C1' H1' DGT sing 114 n n 
N9 C1' DGT sing 115 n n 
N9 C4 DGT sing 116 n y 
C8 N9 DGT sing 117 n y 
C8 H8 DGT sing 118 n n 
N7 C8 DGT doub 119 n y 
N7 C5 DGT sing 120 n y 
C5 C6 DGT sing 121 n n 
C5 C4 DGT doub 122 n y 
C6 N1 DGT sing 123 n n 
O6 C6 DGT doub 124 n n 
N1 C2 DGT sing 125 n n 
C2 N3 DGT doub 126 n n 
C2 N2 DGT sing 127 n n 
N2 HN2 DGT sing 128 n n 
N2 HN2A DGT sing 129 n n 
C4 N3 DGT sing 130 n n 
N1 H16 DGT sing 131 n n 
#
_atom_sites.entry_id                     5AO2 
_atom_sites.fract_transf_matrix[1][1]    0.014346 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002734 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005017 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE A 1 1001 1001 FE FE . 
F 3 DGT A 1 1583 1583 DGT DGT . 
G 2 FE B 1 1001 1001 FE FE . 
H 3 DGT B 1 1583 1583 DGT DGT . 
I 2 FE C 1 1001 1001 FE FE . 
J 3 DGT C 1 1583 1583 DGT DGT . 
K 3 DGT C 1 1584 1584 DGT DGT . 
L 2 FE D 1 1001 1001 FE FE . 
M 4 HOH A 1 2001 2001 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DGT . . . F 3 51.165 -1.307 9.638 1 113.43 ? PG DGT 1583 A 1 
HETATM 2 O O1G DGT . . . F 3 52.477 -0.703 9.35 1 107.58 ? O1G DGT 1583 A 1 
HETATM 3 O O2G DGT . . . F 3 50.689 -2.114 8.468 1 106.42 ? O2G DGT 1583 A 1 
HETATM 4 O O3G DGT . . . F 3 51.273 -2.179 10.87 1 114.57 ? O3G DGT 1583 A 1 
HETATM 5 O O3B DGT . . . F 3 50.137 -0.166 9.928 1 107.58 ? O3B DGT 1583 A 1 
HETATM 6 P PB DGT . . . F 3 48.662 -0.109 9.324 1 102.17 ? PB DGT 1583 A 1 
HETATM 7 O O1B DGT . . . F 3 48.175 1.254 9.673 1 102.02 ? O1B DGT 1583 A 1 
HETATM 8 O O2B DGT . . . F 3 48.641 -0.322 7.829 1 94.22 ? O2B DGT 1583 A 1 
HETATM 9 O O3A DGT . . . F 3 47.724 -1.232 9.967 1 93.56 ? O3A DGT 1583 A 1 
HETATM 10 P PA DGT . . . F 3 46.942 -1.04 11.387 1 74.36 ? PA DGT 1583 A 1 
HETATM 11 O O1A DGT . . . F 3 45.893 -2.078 11.536 1 81.14 ? O1A DGT 1583 A 1 
HETATM 12 O O2A DGT . . . F 3 47.868 -1.158 12.536 1 76.67 ? O2A DGT 1583 A 1 
HETATM 13 O O5' DGT . . . F 3 46.284 0.414 11.399 1 76.33 ? O5' DGT 1583 A 1 
HETATM 14 C C5' DGT . . . F 3 44.939 0.509 11.907 1 74.47 ? C5' DGT 1583 A 1 
HETATM 15 C C4' DGT . . . F 3 44.406 1.925 11.822 1 76.81 ? C4' DGT 1583 A 1 
HETATM 16 O O4' DGT . . . F 3 43.182 1.897 12.59 1 81.01 ? O4' DGT 1583 A 1 
HETATM 17 C C3' DGT . . . F 3 45.295 2.859 12.476 1 83.67 ? C3' DGT 1583 A 1 
HETATM 18 O O3' DGT . . . F 3 44.978 4.192 12.041 1 101.92 ? O3' DGT 1583 A 1 
HETATM 19 C C2' DGT . . . F 3 44.968 2.801 13.926 1 77.97 ? C2' DGT 1583 A 1 
HETATM 20 C C1' DGT . . . F 3 43.513 2.489 13.9 1 81.34 ? C1' DGT 1583 A 1 
HETATM 21 N N9 DGT . . . F 3 43.199 1.556 14.91 1 76.65 ? N9 DGT 1583 A 1 
HETATM 22 C C8 DGT . . . F 3 41.945 1.459 15.703 1 70.54 ? C8 DGT 1583 A 1 
HETATM 23 N N7 DGT . . . F 3 42.136 0.455 16.473 1 63.84 ? N7 DGT 1583 A 1 
HETATM 24 C C5 DGT . . . F 3 43.213 -0.102 16.356 1 49.15 ? C5 DGT 1583 A 1 
HETATM 25 C C6 DGT . . . F 3 43.667 -1.253 17.108 1 46.44 ? C6 DGT 1583 A 1 
HETATM 26 O O6 DGT . . . F 3 42.957 -1.765 17.961 1 63.4 ? O6 DGT 1583 A 1 
HETATM 27 N N1 DGT . . . F 3 44.886 -1.794 16.885 1 48.69 ? N1 DGT 1583 A 1 
HETATM 28 C C2 DGT . . . F 3 45.733 -1.233 15.915 1 57.24 ? C2 DGT 1583 A 1 
HETATM 29 N N2 DGT . . . F 3 47.02 -1.804 15.672 1 63.34 ? N2 DGT 1583 A 1 
HETATM 30 N N3 DGT . . . F 3 45.321 -0.137 15.197 1 58.43 ? N3 DGT 1583 A 1 
HETATM 31 C C4 DGT . . . F 3 44.026 0.429 15.432 1 60.69 ? C4 DGT 1583 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#