data_5AO3 # _model_server_result.job_id Uj2ocAv20enG5GXWaOMi2Q _model_server_result.datetime_utc '2024-11-28 00:19:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ao3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1585}' # _entry.id 5AO3 # _exptl.entry_id 5AO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.37 _cell.angle_beta 108.97 _cell.angle_gamma 115.33 _cell.entry_id 5AO3 _cell.length_a 81.919 _cell.length_b 95.733 _cell.length_c 97.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 P N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 79 A HIS 167 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 118 A HIS 206 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OD2 ASP 223 A ASP 311 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 E FE FE . A FE 1584 1_555 I O1 SO4 . A SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 B NE2 HIS 79 B HIS 167 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B NE2 HIS 118 B HIS 206 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 B OD2 ASP 119 B ASP 207 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B OD1 ASP 223 B ASP 311 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 J FE FE . B FE 1584 1_555 N O4 SO4 . B SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc10 C NE2 HIS 79 C HIS 167 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc11 C NE2 HIS 118 C HIS 206 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 C OD2 ASP 119 C ASP 207 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc13 C OD1 ASP 223 C ASP 311 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 O FE FE . C FE 1584 1_555 R O1 SO4 . C SO4 1587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc15 D NE2 HIS 79 D HIS 167 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 D NE2 HIS 118 D HIS 206 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc17 D OD1 ASP 223 D ASP 311 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc18 S FE FE . D FE 1584 1_555 W O3 SO4 . D SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 5AO3 _atom_sites.fract_transf_matrix[1][1] 0.012207 _atom_sites.fract_transf_matrix[1][2] 0.005778 _atom_sites.fract_transf_matrix[1][3] 0.005397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011557 _atom_sites.fract_transf_matrix[2][3] 0.002245 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE A 1 1584 1584 FE FE . F 3 GTP A 1 1585 1585 GTP GTP . G 4 SO4 A 1 1586 1586 SO4 SO4 . H 4 SO4 A 1 1587 1587 SO4 SO4 . I 4 SO4 A 1 1588 1588 SO4 SO4 . J 2 FE B 1 1584 1584 FE FE . K 4 SO4 B 1 1585 1585 SO4 SO4 . L 4 SO4 B 1 1586 1586 SO4 SO4 . M 4 SO4 B 1 1587 1587 SO4 SO4 . N 4 SO4 B 1 1588 1588 SO4 SO4 . O 2 FE C 1 1584 1584 FE FE . P 3 GTP C 1 1585 1585 GTP GTP . Q 4 SO4 C 1 1586 1586 SO4 SO4 . R 4 SO4 C 1 1587 1587 SO4 SO4 . S 2 FE D 1 1584 1584 FE FE . T 3 GTP D 1 1585 1585 GTP GTP . U 3 GTP D 1 1586 1586 GTP GTP . V 4 SO4 D 1 1587 1587 SO4 SO4 . W 4 SO4 D 1 1588 1588 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 3 -42.694 7.985 19.693 1 157.2 ? PG GTP 1585 A 1 HETATM 2 O O1G GTP . . . F 3 -44.108 7.55 20.007 1 163.29 ? O1G GTP 1585 A 1 HETATM 3 O O2G GTP . . . F 3 -41.873 8.032 20.958 1 156.6 ? O2G GTP 1585 A 1 HETATM 4 O O3G GTP . . . F 3 -42.077 7.038 18.691 1 157.97 ? O3G GTP 1585 A 1 HETATM 5 O O3B GTP . . . F 3 -42.807 9.466 19.075 1 181.9 ? O3B GTP 1585 A 1 HETATM 6 P PB GTP . . . F 3 -42.301 9.83 17.591 1 161.18 ? PB GTP 1585 A 1 HETATM 7 O O1B GTP . . . F 3 -42.768 8.852 16.541 1 156.22 ? O1B GTP 1585 A 1 HETATM 8 O O2B GTP . . . F 3 -42.705 11.229 17.258 1 167.69 ? O2B GTP 1585 A 1 HETATM 9 O O3A GTP . . . F 3 -40.709 9.836 17.764 1 153.08 ? O3A GTP 1585 A 1 HETATM 10 P PA GTP . . . F 3 -40.048 11.154 18.417 1 77.54 ? PA GTP 1585 A 1 HETATM 11 O O1A GTP . . . F 3 -40.818 11.538 19.649 1 89.25 ? O1A GTP 1585 A 1 HETATM 12 O O2A GTP . . . F 3 -38.624 10.845 18.77 1 84.18 ? O2A GTP 1585 A 1 HETATM 13 O O5' GTP . . . F 3 -40.182 12.261 17.242 1 109.5 ? O5' GTP 1585 A 1 HETATM 14 C C5' GTP . . . F 3 -39.05 12.902 16.701 1 108.53 ? C5' GTP 1585 A 1 HETATM 15 C C4' GTP . . . F 3 -38.96 12.82 15.185 1 110.27 ? C4' GTP 1585 A 1 HETATM 16 O O4' GTP . . . F 3 -37.86 13.616 14.803 1 112.43 ? O4' GTP 1585 A 1 HETATM 17 C C3' GTP . . . F 3 -38.615 11.412 14.755 1 114.25 ? C3' GTP 1585 A 1 HETATM 18 O O3' GTP . . . F 3 -39.144 11.2 13.466 1 116.97 ? O3' GTP 1585 A 1 HETATM 19 C C2' GTP . . . F 3 -37.105 11.371 14.69 1 115.05 ? C2' GTP 1585 A 1 HETATM 20 O O2' GTP . . . F 3 -36.749 10.709 13.5 1 116.68 ? O2' GTP 1585 A 1 HETATM 21 C C1' GTP . . . F 3 -36.676 12.836 14.637 1 109.89 ? C1' GTP 1585 A 1 HETATM 22 N N9 GTP . . . F 3 -35.701 13.34 15.658 1 92.41 ? N9 GTP 1585 A 1 HETATM 23 C C8 GTP . . . F 3 -34.861 14.395 15.394 1 81.34 ? C8 GTP 1585 A 1 HETATM 24 N N7 GTP . . . F 3 -34.13 14.654 16.487 1 77.84 ? N7 GTP 1585 A 1 HETATM 25 C C5 GTP . . . F 3 -34.478 13.788 17.463 1 79.65 ? C5 GTP 1585 A 1 HETATM 26 C C6 GTP . . . F 3 -34.034 13.628 18.77 1 82.05 ? C6 GTP 1585 A 1 HETATM 27 O O6 GTP . . . F 3 -33.166 14.348 19.237 1 84.55 ? O6 GTP 1585 A 1 HETATM 28 N N1 GTP . . . F 3 -34.551 12.664 19.581 1 77.01 ? N1 GTP 1585 A 1 HETATM 29 C C2 GTP . . . F 3 -35.521 11.85 19.099 1 70.35 ? C2 GTP 1585 A 1 HETATM 30 N N2 GTP . . . F 3 -35.997 10.92 19.918 1 64.19 ? N2 GTP 1585 A 1 HETATM 31 N N3 GTP . . . F 3 -35.969 12.003 17.802 1 80.34 ? N3 GTP 1585 A 1 HETATM 32 C C4 GTP . . . F 3 -35.467 12.956 16.975 1 82.31 ? C4 GTP 1585 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #