data_5AO3 # _model_server_result.job_id XNo-mWoQgzsmXFWWND4MHQ _model_server_result.datetime_utc '2024-11-24 06:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ao3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1585}' # _entry.id 5AO3 # _exptl.entry_id 5AO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.37 _cell.angle_beta 108.97 _cell.angle_gamma 115.33 _cell.entry_id 5AO3 _cell.length_a 81.919 _cell.length_b 95.733 _cell.length_c 97.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 P N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 79 A HIS 167 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 118 A HIS 206 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OD2 ASP 223 A ASP 311 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 E FE FE . A FE 1584 1_555 I O1 SO4 . A SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 B NE2 HIS 79 B HIS 167 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B NE2 HIS 118 B HIS 206 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 B OD2 ASP 119 B ASP 207 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B OD1 ASP 223 B ASP 311 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 J FE FE . B FE 1584 1_555 N O4 SO4 . B SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc10 C NE2 HIS 79 C HIS 167 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc11 C NE2 HIS 118 C HIS 206 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 C OD2 ASP 119 C ASP 207 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc13 C OD1 ASP 223 C ASP 311 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 O FE FE . C FE 1584 1_555 R O1 SO4 . C SO4 1587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc15 D NE2 HIS 79 D HIS 167 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 D NE2 HIS 118 D HIS 206 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc17 D OD1 ASP 223 D ASP 311 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc18 S FE FE . D FE 1584 1_555 W O3 SO4 . D SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 5AO3 _atom_sites.fract_transf_matrix[1][1] 0.012207 _atom_sites.fract_transf_matrix[1][2] 0.005778 _atom_sites.fract_transf_matrix[1][3] 0.005397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011557 _atom_sites.fract_transf_matrix[2][3] 0.002245 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE A 1 1584 1584 FE FE . F 3 GTP A 1 1585 1585 GTP GTP . G 4 SO4 A 1 1586 1586 SO4 SO4 . H 4 SO4 A 1 1587 1587 SO4 SO4 . I 4 SO4 A 1 1588 1588 SO4 SO4 . J 2 FE B 1 1584 1584 FE FE . K 4 SO4 B 1 1585 1585 SO4 SO4 . L 4 SO4 B 1 1586 1586 SO4 SO4 . M 4 SO4 B 1 1587 1587 SO4 SO4 . N 4 SO4 B 1 1588 1588 SO4 SO4 . O 2 FE C 1 1584 1584 FE FE . P 3 GTP C 1 1585 1585 GTP GTP . Q 4 SO4 C 1 1586 1586 SO4 SO4 . R 4 SO4 C 1 1587 1587 SO4 SO4 . S 2 FE D 1 1584 1584 FE FE . T 3 GTP D 1 1585 1585 GTP GTP . U 3 GTP D 1 1586 1586 GTP GTP . V 4 SO4 D 1 1587 1587 SO4 SO4 . W 4 SO4 D 1 1588 1588 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . P 3 -14.133 45.693 5.234 1 141.63 ? PG GTP 1585 C 1 HETATM 2 O O1G GTP . . . P 3 -12.627 45.789 5.234 1 148.18 ? O1G GTP 1585 C 1 HETATM 3 O O2G GTP . . . P 3 -14.623 45.015 3.977 1 143.89 ? O2G GTP 1585 C 1 HETATM 4 O O3G GTP . . . P 3 -14.703 47.087 5.286 1 140.63 ? O3G GTP 1585 C 1 HETATM 5 O O3B GTP . . . P 3 -14.627 44.856 6.531 1 195.45 ? O3B GTP 1585 C 1 HETATM 6 P PB GTP . . . P 3 -14.003 43.427 6.967 1 155.93 ? PB GTP 1585 C 1 HETATM 7 O O1B GTP . . . P 3 -13.259 43.539 8.278 1 153.9 ? O1B GTP 1585 C 1 HETATM 8 O O2B GTP . . . P 3 -13.121 42.868 5.88 1 157.68 ? O2B GTP 1585 C 1 HETATM 9 O O3A GTP . . . P 3 -15.322 42.518 7.159 1 115.18 ? O3A GTP 1585 C 1 HETATM 10 P PA GTP . . . P 3 -16.182 41.988 5.902 1 69.69 ? PA GTP 1585 C 1 HETATM 11 O O1A GTP . . . P 3 -15.321 41.874 4.668 1 74.19 ? O1A GTP 1585 C 1 HETATM 12 O O2A GTP . . . P 3 -17.355 42.887 5.617 1 81.06 ? O2A GTP 1585 C 1 HETATM 13 O O5' GTP . . . P 3 -16.713 40.548 6.344 1 42.43 ? O5' GTP 1585 C 1 HETATM 14 C C5' GTP . . . P 3 -16.098 39.381 5.83 1 62.42 ? C5' GTP 1585 C 1 HETATM 15 C C4' GTP . . . P 3 -16.861 38.803 4.628 1 90.91 ? C4' GTP 1585 C 1 HETATM 16 O O4' GTP . . . P 3 -17.833 37.877 5.091 1 100.41 ? O4' GTP 1585 C 1 HETATM 17 C C3' GTP . . . P 3 -17.633 39.813 3.77 1 98.64 ? C3' GTP 1585 C 1 HETATM 18 O O3' GTP . . . P 3 -16.887 40.352 2.691 1 99.06 ? O3' GTP 1585 C 1 HETATM 19 C C2' GTP . . . P 3 -18.81 39.004 3.261 1 99.52 ? C2' GTP 1585 C 1 HETATM 20 O O2' GTP . . . P 3 -18.464 38.432 2.017 1 99.93 ? O2' GTP 1585 C 1 HETATM 21 C C1' GTP . . . P 3 -19.012 37.902 4.301 1 94.91 ? C1' GTP 1585 C 1 HETATM 22 N N9 GTP . . . P 3 -20.142 38.105 5.244 1 82.75 ? N9 GTP 1585 C 1 HETATM 23 C C8 GTP . . . P 3 -20.843 37.1 5.848 1 84.93 ? C8 GTP 1585 C 1 HETATM 24 N N7 GTP . . . P 3 -21.785 37.646 6.651 1 86.74 ? N7 GTP 1585 C 1 HETATM 25 C C5 GTP . . . P 3 -21.706 38.997 6.591 1 76.51 ? C5 GTP 1585 C 1 HETATM 26 C C6 GTP . . . P 3 -22.414 40.041 7.209 1 67.79 ? C6 GTP 1585 C 1 HETATM 27 O O6 GTP . . . P 3 -23.332 39.817 7.997 1 71.43 ? O6 GTP 1585 C 1 HETATM 28 N N1 GTP . . . P 3 -22.09 41.351 6.943 1 58.65 ? N1 GTP 1585 C 1 HETATM 29 C C2 GTP . . . P 3 -21.061 41.614 6.057 1 54.69 ? C2 GTP 1585 C 1 HETATM 30 N N2 GTP . . . P 3 -20.676 42.852 5.739 1 48.64 ? N2 GTP 1585 C 1 HETATM 31 N N3 GTP . . . P 3 -20.381 40.581 5.47 1 63.54 ? N3 GTP 1585 C 1 HETATM 32 C C4 GTP . . . P 3 -20.674 39.29 5.715 1 74.3 ? C4 GTP 1585 C 1 # _model_server_stats.io_time_ms 222 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #