data_5AO3
#
_model_server_result.job_id            lIJn88U1wvO0vmav8Zzuww 
_model_server_result.datetime_utc      '2024-11-28 00:19:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ao3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1586}' 
#
_entry.id    5AO3 
#
_exptl.entry_id    5AO3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.37 
_cell.angle_beta          108.97 
_cell.angle_gamma         115.33 
_cell.entry_id            5AO3 
_cell.length_a            81.919 
_cell.length_b            95.733 
_cell.length_c            97.592 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 P N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A NE2 HIS 79 A HIS 167 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc2 A NE2 HIS 118 A HIS 206 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc3 A OD2 ASP 223 A ASP 311 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc4 E FE FE . A FE 1584 1_555 I O1 SO4 . A SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc5 B NE2 HIS 79 B HIS 167 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc6 B NE2 HIS 118 B HIS 206 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc7 B OD2 ASP 119 B ASP 207 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc8 B OD1 ASP 223 B ASP 311 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc9 J FE FE . B FE 1584 1_555 N O4 SO4 . B SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? 
metalc ? metalc10 C NE2 HIS 79 C HIS 167 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc11 C NE2 HIS 118 C HIS 206 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc12 C OD2 ASP 119 C ASP 207 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc13 C OD1 ASP 223 C ASP 311 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc14 O FE FE . C FE 1584 1_555 R O1 SO4 . C SO4 1587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
metalc ? metalc15 D NE2 HIS 79 D HIS 167 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc16 D NE2 HIS 118 D HIS 206 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc17 D OD1 ASP 223 D ASP 311 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc18 S FE FE . D FE 1584 1_555 W O3 SO4 . D SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     5AO3 
_atom_sites.fract_transf_matrix[1][1]    0.012207 
_atom_sites.fract_transf_matrix[1][2]    0.005778 
_atom_sites.fract_transf_matrix[1][3]    0.005397 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011557 
_atom_sites.fract_transf_matrix[2][3]    0.002245 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE A 1 1584 1584 FE FE . 
F 3 GTP A 1 1585 1585 GTP GTP . 
G 4 SO4 A 1 1586 1586 SO4 SO4 . 
H 4 SO4 A 1 1587 1587 SO4 SO4 . 
I 4 SO4 A 1 1588 1588 SO4 SO4 . 
J 2 FE B 1 1584 1584 FE FE . 
K 4 SO4 B 1 1585 1585 SO4 SO4 . 
L 4 SO4 B 1 1586 1586 SO4 SO4 . 
M 4 SO4 B 1 1587 1587 SO4 SO4 . 
N 4 SO4 B 1 1588 1588 SO4 SO4 . 
O 2 FE C 1 1584 1584 FE FE . 
P 3 GTP C 1 1585 1585 GTP GTP . 
Q 4 SO4 C 1 1586 1586 SO4 SO4 . 
R 4 SO4 C 1 1587 1587 SO4 SO4 . 
S 2 FE D 1 1584 1584 FE FE . 
T 3 GTP D 1 1585 1585 GTP GTP . 
U 3 GTP D 1 1586 1586 GTP GTP . 
V 4 SO4 D 1 1587 1587 SO4 SO4 . 
W 4 SO4 D 1 1588 1588 SO4 SO4 . 
X 5 HOH A 1 2001 2001 HOH HOH . 
Y 5 HOH B 1 2001 2001 HOH HOH . 
Y 5 HOH B 2 2002 2002 HOH HOH . 
Z 5 HOH C 1 2001 2001 HOH HOH . 
Z 5 HOH C 2 2002 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . U 3 -14.289 -25.769 -19.871 1 159.22 ? PG GTP 1586 D 1 
HETATM 2 O O1G GTP . . . U 3 -15.42 -26.699 -19.506 1 158.71 ? O1G GTP 1586 D 1 
HETATM 3 O O2G GTP . . . U 3 -13.512 -26.36 -21.024 1 162.23 ? O2G GTP 1586 D 1 
HETATM 4 O O3G GTP . . . U 3 -13.394 -25.528 -18.676 1 159.37 ? O3G GTP 1586 D 1 
HETATM 5 O O3B GTP . . . U 3 -14.93 -24.373 -20.337 1 200.42 ? O3B GTP 1586 D 1 
HETATM 6 P PB GTP . . . U 3 -14.011 -23.133 -20.799 1 183.68 ? PB GTP 1586 D 1 
HETATM 7 O O1B GTP . . . U 3 -12.685 -23.623 -21.328 1 184.57 ? O1B GTP 1586 D 1 
HETATM 8 O O2B GTP . . . U 3 -13.863 -22.128 -19.68 1 180.45 ? O2B GTP 1586 D 1 
HETATM 9 O O3A GTP . . . U 3 -14.852 -22.529 -22.024 1 136.45 ? O3A GTP 1586 D 1 
HETATM 10 P PA GTP . . . U 3 -16.284 -21.915 -21.657 1 62.88 ? PA GTP 1586 D 1 
HETATM 11 O O1A GTP . . . U 3 -17.045 -22.86 -20.777 1 59.89 ? O1A GTP 1586 D 1 
HETATM 12 O O2A GTP . . . U 3 -17.063 -21.548 -22.884 1 81.05 ? O2A GTP 1586 D 1 
HETATM 13 O O5' GTP . . . U 3 -15.937 -20.588 -20.851 1 88.77 ? O5' GTP 1586 D 1 
HETATM 14 C C5' GTP . . . U 3 -16.515 -19.388 -21.278 1 86.29 ? C5' GTP 1586 D 1 
HETATM 15 C C4' GTP . . . U 3 -17.286 -18.808 -20.101 1 99.13 ? C4' GTP 1586 D 1 
HETATM 16 O O4' GTP . . . U 3 -18.252 -17.955 -20.675 1 102.17 ? O4' GTP 1586 D 1 
HETATM 17 C C3' GTP . . . U 3 -18.048 -19.842 -19.258 1 102.23 ? C3' GTP 1586 D 1 
HETATM 18 O O3' GTP . . . U 3 -17.386 -20.316 -18.089 1 96.22 ? O3' GTP 1586 D 1 
HETATM 19 C C2' GTP . . . U 3 -19.29 -19.072 -18.881 1 104.46 ? C2' GTP 1586 D 1 
HETATM 20 O O2' GTP . . . U 3 -19.037 -18.331 -17.71 1 105.83 ? O2' GTP 1586 D 1 
HETATM 21 C C1' GTP . . . U 3 -19.486 -18.062 -20.001 1 99.26 ? C1' GTP 1586 D 1 
HETATM 22 N N9 GTP . . . U 3 -20.553 -18.412 -20.972 1 85.41 ? N9 GTP 1586 D 1 
HETATM 23 C C8 GTP . . . U 3 -21.326 -17.482 -21.612 1 86.33 ? C8 GTP 1586 D 1 
HETATM 24 N N7 GTP . . . U 3 -22.201 -18.103 -22.427 1 89.6 ? N7 GTP 1586 D 1 
HETATM 25 C C5 GTP . . . U 3 -22.006 -19.433 -22.325 1 79.43 ? C5 GTP 1586 D 1 
HETATM 26 C C6 GTP . . . U 3 -22.629 -20.51 -22.94 1 68.73 ? C6 GTP 1586 D 1 
HETATM 27 O O6 GTP . . . U 3 -23.536 -20.323 -23.747 1 66.07 ? O6 GTP 1586 D 1 
HETATM 28 N N1 GTP . . . U 3 -22.22 -21.787 -22.641 1 62.39 ? N1 GTP 1586 D 1 
HETATM 29 C C2 GTP . . . U 3 -21.193 -21.986 -21.744 1 50.41 ? C2 GTP 1586 D 1 
HETATM 30 N N2 GTP . . . U 3 -20.777 -23.212 -21.429 1 58.4 ? N2 GTP 1586 D 1 
HETATM 31 N N3 GTP . . . U 3 -20.586 -20.912 -21.151 1 55.66 ? N3 GTP 1586 D 1 
HETATM 32 C C4 GTP . . . U 3 -20.975 -19.648 -21.419 1 74.69 ? C4 GTP 1586 D 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#