data_5AO3 # _model_server_result.job_id ztcKeS7u3bU1M7Y70UMa4g _model_server_result.datetime_utc '2024-11-24 06:54:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ao3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1587}' # _entry.id 5AO3 # _exptl.entry_id 5AO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.37 _cell.angle_beta 108.97 _cell.angle_gamma 115.33 _cell.entry_id 5AO3 _cell.length_a 81.919 _cell.length_b 95.733 _cell.length_c 97.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 V N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 79 A HIS 167 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 118 A HIS 206 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OD2 ASP 223 A ASP 311 1_555 E FE FE . A FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc4 E FE FE . A FE 1584 1_555 I O1 SO4 . A SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 B NE2 HIS 79 B HIS 167 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B NE2 HIS 118 B HIS 206 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 B OD2 ASP 119 B ASP 207 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B OD1 ASP 223 B ASP 311 1_555 J FE FE . B FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 J FE FE . B FE 1584 1_555 N O4 SO4 . B SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? metalc ? metalc10 C NE2 HIS 79 C HIS 167 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc11 C NE2 HIS 118 C HIS 206 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc12 C OD2 ASP 119 C ASP 207 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc13 C OD1 ASP 223 C ASP 311 1_555 O FE FE . C FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc14 O FE FE . C FE 1584 1_555 R O1 SO4 . C SO4 1587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc15 D NE2 HIS 79 D HIS 167 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 D NE2 HIS 118 D HIS 206 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc17 D OD1 ASP 223 D ASP 311 1_555 S FE FE . D FE 1584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc18 S FE FE . D FE 1584 1_555 W O3 SO4 . D SO4 1588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 340 n n S O2 SO4 doub 341 n n S O3 SO4 sing 342 n n S O4 SO4 sing 343 n n # _atom_sites.entry_id 5AO3 _atom_sites.fract_transf_matrix[1][1] 0.012207 _atom_sites.fract_transf_matrix[1][2] 0.005778 _atom_sites.fract_transf_matrix[1][3] 0.005397 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011557 _atom_sites.fract_transf_matrix[2][3] 0.002245 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE A 1 1584 1584 FE FE . F 3 GTP A 1 1585 1585 GTP GTP . G 4 SO4 A 1 1586 1586 SO4 SO4 . H 4 SO4 A 1 1587 1587 SO4 SO4 . I 4 SO4 A 1 1588 1588 SO4 SO4 . J 2 FE B 1 1584 1584 FE FE . K 4 SO4 B 1 1585 1585 SO4 SO4 . L 4 SO4 B 1 1586 1586 SO4 SO4 . M 4 SO4 B 1 1587 1587 SO4 SO4 . N 4 SO4 B 1 1588 1588 SO4 SO4 . O 2 FE C 1 1584 1584 FE FE . P 3 GTP C 1 1585 1585 GTP GTP . Q 4 SO4 C 1 1586 1586 SO4 SO4 . R 4 SO4 C 1 1587 1587 SO4 SO4 . S 2 FE D 1 1584 1584 FE FE . T 3 GTP D 1 1585 1585 GTP GTP . U 3 GTP D 1 1586 1586 GTP GTP . V 4 SO4 D 1 1587 1587 SO4 SO4 . W 4 SO4 D 1 1588 1588 SO4 SO4 . X 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH B 1 2001 2001 HOH HOH . Y 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH C 1 2001 2001 HOH HOH . Z 5 HOH C 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . M 4 -5.569 -4.777 -34.106 1 136.69 ? S SO4 1587 B 1 HETATM 2 O O1 SO4 . . . M 4 -5.139 -5.686 -35.164 1 136.65 ? O1 SO4 1587 B 1 HETATM 3 O O2 SO4 . . . M 4 -6.869 -4.218 -34.458 1 143.3 ? O2 SO4 1587 B 1 HETATM 4 O O3 SO4 . . . M 4 -5.698 -5.499 -32.842 1 139.41 ? O3 SO4 1587 B 1 HETATM 5 O O4 SO4 . . . M 4 -4.596 -3.699 -33.946 1 133.71 ? O4 SO4 1587 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 5 #