data_5AO4
#
_model_server_result.job_id            Id2Hp-T0hXtV_KFGyXE6YA 
_model_server_result.datetime_utc      '2024-11-24 15:26:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ao4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1582}' 
#
_entry.id    5AO4 
#
_exptl.entry_id    5AO4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.93 
_cell.angle_gamma         90 
_cell.entry_id            5AO4 
_cell.length_a            197.545 
_cell.length_b            80.817 
_cell.length_c            147.665 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     5AO4 
_atom_sites.fract_transf_matrix[1][1]    0.005062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002353 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007468 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FE A 1 1584 1584 FE FE . 
F 3 GTP A 1 1585 1585 GTP GTP . 
G 3 GTP A 1 1586 1586 GTP GTP . 
H 2 FE B 1 1582 1582 FE FE . 
I 2 FE C 1 1581 1581 FE FE . 
J 3 GTP C 1 1582 1582 GTP GTP . 
K 2 FE D 1 1582 1582 FE FE . 
L 3 GTP D 1 1583 1583 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . J 3 59.966 21.039 12.644 1 65.98 ? PG GTP 1582 C 1 
HETATM 2 O O1G GTP . . . J 3 60.828 19.806 12.818 1 65.98 ? O1G GTP 1582 C 1 
HETATM 3 O O2G GTP . . . J 3 60.724 22.246 13.144 1 65.98 ? O2G GTP 1582 C 1 
HETATM 4 O O3G GTP . . . J 3 59.583 21.204 11.193 1 65.98 ? O3G GTP 1582 C 1 
HETATM 5 O O3B GTP . . . J 3 58.645 20.851 13.535 1 65.98 ? O3B GTP 1582 C 1 
HETATM 6 P PB GTP . . . J 3 57.301 21.683 13.265 1 65.98 ? PB GTP 1582 C 1 
HETATM 7 O O1B GTP . . . J 3 56.197 21.149 14.147 1 65.98 ? O1B GTP 1582 C 1 
HETATM 8 O O2B GTP . . . J 3 56.939 21.673 11.8 1 65.98 ? O2B GTP 1582 C 1 
HETATM 9 O O3A GTP . . . J 3 57.664 23.173 13.709 1 65.98 ? O3A GTP 1582 C 1 
HETATM 10 P PA GTP . . . J 3 58.277 23.527 15.141 1 65.98 ? PA GTP 1582 C 1 
HETATM 11 O O1A GTP . . . J 3 59.228 22.446 15.579 1 65.98 ? O1A GTP 1582 C 1 
HETATM 12 O O2A GTP . . . J 3 58.947 24.878 15.089 1 65.98 ? O2A GTP 1582 C 1 
HETATM 13 O O5' GTP . . . J 3 56.978 23.581 16.083 1 65.98 ? O5' GTP 1582 C 1 
HETATM 14 C C5' GTP . . . J 3 56.48 24.853 16.4 1 65.98 ? C5' GTP 1582 C 1 
HETATM 15 C C4' GTP . . . J 3 55.532 24.814 17.581 1 65.98 ? C4' GTP 1582 C 1 
HETATM 16 O O4' GTP . . . J 3 55.993 25.738 18.54 1 65.98 ? O4' GTP 1582 C 1 
HETATM 17 C C3' GTP . . . J 3 54.177 25.301 17.114 1 65.98 ? C3' GTP 1582 C 1 
HETATM 18 O O3' GTP . . . J 3 53.194 24.457 17.658 1 65.98 ? O3' GTP 1582 C 1 
HETATM 19 C C2' GTP . . . J 3 54.006 26.684 17.698 1 65.98 ? C2' GTP 1582 C 1 
HETATM 20 O O2' GTP . . . J 3 52.7 26.803 18.204 1 65.98 ? O2' GTP 1582 C 1 
HETATM 21 C C1' GTP . . . J 3 55.036 26.743 18.813 1 65.98 ? C1' GTP 1582 C 1 
HETATM 22 N N9 GTP . . . J 3 55.773 28.017 18.891 1 65.98 ? N9 GTP 1582 C 1 
HETATM 23 C C8 GTP . . . J 3 55.787 28.857 19.973 1 65.98 ? C8 GTP 1582 C 1 
HETATM 24 N N7 GTP . . . J 3 56.588 29.905 19.693 1 65.98 ? N7 GTP 1582 C 1 
HETATM 25 C C5 GTP . . . J 3 57.094 29.744 18.455 1 65.98 ? C5 GTP 1582 C 1 
HETATM 26 C C6 GTP . . . J 3 57.956 30.526 17.702 1 65.98 ? C6 GTP 1582 C 1 
HETATM 27 O O6 GTP . . . J 3 58.395 31.579 18.165 1 65.98 ? O6 GTP 1582 C 1 
HETATM 28 N N1 GTP . . . J 3 58.315 30.109 16.435 1 65.98 ? N1 GTP 1582 C 1 
HETATM 29 C C2 GTP . . . J 3 57.822 28.927 15.92 1 65.98 ? C2 GTP 1582 C 1 
HETATM 30 N N2 GTP . . . J 3 58.179 28.542 14.693 1 65.98 ? N2 GTP 1582 C 1 
HETATM 31 N N3 GTP . . . J 3 56.962 28.159 16.688 1 65.98 ? N3 GTP 1582 C 1 
HETATM 32 C C4 GTP . . . J 3 56.599 28.558 17.935 1 65.98 ? C4 GTP 1582 C 1 
#
_model_server_stats.io_time_ms              123 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#