data_5AO4 # _model_server_result.job_id 2Nkd7sYNBYFG032SneOfjQ _model_server_result.datetime_utc '2024-11-24 15:32:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ao4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1583}' # _entry.id 5AO4 # _exptl.entry_id 5AO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.93 _cell.angle_gamma 90 _cell.entry_id 5AO4 _cell.length_a 197.545 _cell.length_b 80.817 _cell.length_c 147.665 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 253 A CYS 341 1_555 A SG CYS 262 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf2 B SG CYS 253 B CYS 341 1_555 B SG CYS 262 B CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf3 C SG CYS 253 C CYS 341 1_555 C SG CYS 262 C CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 D SG CYS 253 D CYS 341 1_555 D SG CYS 262 D CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 5AO4 _atom_sites.fract_transf_matrix[1][1] 0.005062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002353 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE A 1 1584 1584 FE FE . F 3 GTP A 1 1585 1585 GTP GTP . G 3 GTP A 1 1586 1586 GTP GTP . H 2 FE B 1 1582 1582 FE FE . I 2 FE C 1 1581 1581 FE FE . J 3 GTP C 1 1582 1582 GTP GTP . K 2 FE D 1 1582 1582 FE FE . L 3 GTP D 1 1583 1583 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . L 3 49.187 46.364 52.104 1 51.38 ? PG GTP 1583 D 1 HETATM 2 O O1G GTP . . . L 3 48.471 47.357 52.987 1 51.38 ? O1G GTP 1583 D 1 HETATM 3 O O2G GTP . . . L 3 49.253 46.87 50.681 1 51.38 ? O2G GTP 1583 D 1 HETATM 4 O O3G GTP . . . L 3 48.48 45.024 52.167 1 51.38 ? O3G GTP 1583 D 1 HETATM 5 O O3B GTP . . . L 3 50.674 46.137 52.665 1 51.38 ? O3B GTP 1583 D 1 HETATM 6 P PB GTP . . . L 3 51.858 47.225 52.664 1 51.38 ? PB GTP 1583 D 1 HETATM 7 O O1B GTP . . . L 3 51.306 48.557 53.106 1 51.38 ? O1B GTP 1583 D 1 HETATM 8 O O2B GTP . . . L 3 52.988 46.771 53.56 1 51.38 ? O2B GTP 1583 D 1 HETATM 9 O O3A GTP . . . L 3 52.355 47.36 51.137 1 51.38 ? O3A GTP 1583 D 1 HETATM 10 P PA GTP . . . L 3 53.886 47.069 50.735 1 51.38 ? PA GTP 1583 D 1 HETATM 11 O O1A GTP . . . L 3 54.407 45.843 51.439 1 51.38 ? O1A GTP 1583 D 1 HETATM 12 O O2A GTP . . . L 3 54.761 48.263 51.007 1 51.38 ? O2A GTP 1583 D 1 HETATM 13 O O5' GTP . . . L 3 53.789 46.742 49.17 1 51.38 ? O5' GTP 1583 D 1 HETATM 14 C C5' GTP . . . L 3 53.719 45.397 48.772 1 51.38 ? C5' GTP 1583 D 1 HETATM 15 C C4' GTP . . . L 3 52.355 45.128 48.155 1 51.38 ? C4' GTP 1583 D 1 HETATM 16 O O4' GTP . . . L 3 52.543 44.376 46.978 1 51.38 ? O4' GTP 1583 D 1 HETATM 17 C C3' GTP . . . L 3 51.487 44.296 49.081 1 51.38 ? C3' GTP 1583 D 1 HETATM 18 O O3' GTP . . . L 3 50.322 45.012 49.419 1 51.38 ? O3' GTP 1583 D 1 HETATM 19 C C2' GTP . . . L 3 51.082 43.063 48.299 1 51.38 ? C2' GTP 1583 D 1 HETATM 20 O O2' GTP . . . L 3 49.69 43.093 48.082 1 51.38 ? O2' GTP 1583 D 1 HETATM 21 C C1' GTP . . . L 3 51.781 43.185 46.96 1 51.38 ? C1' GTP 1583 D 1 HETATM 22 N N9 GTP . . . L 3 52.737 42.095 46.705 1 51.38 ? N9 GTP 1583 D 1 HETATM 23 C C8 GTP . . . L 3 52.701 41.246 45.634 1 51.38 ? C8 GTP 1583 D 1 HETATM 24 N N7 GTP . . . L 3 53.749 40.402 45.712 1 51.38 ? N7 GTP 1583 D 1 HETATM 25 C C5 GTP . . . L 3 54.462 40.71 46.813 1 51.38 ? C5 GTP 1583 D 1 HETATM 26 C C6 GTP . . . L 3 55.614 40.163 47.35 1 51.38 ? C6 GTP 1583 D 1 HETATM 27 O O6 GTP . . . L 3 56.153 39.218 46.783 1 51.38 ? O6 GTP 1583 D 1 HETATM 28 N N1 GTP . . . L 3 56.145 40.679 48.514 1 51.38 ? N1 GTP 1583 D 1 HETATM 29 C C2 GTP . . . L 3 55.528 41.744 49.141 1 51.38 ? C2 GTP 1583 D 1 HETATM 30 N N2 GTP . . . L 3 56.05 42.24 50.263 1 51.38 ? N2 GTP 1583 D 1 HETATM 31 N N3 GTP . . . L 3 54.376 42.285 48.596 1 51.38 ? N3 GTP 1583 D 1 HETATM 32 C C4 GTP . . . L 3 53.849 41.779 47.449 1 51.38 ? C4 GTP 1583 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #