data_5AO9 # _model_server_result.job_id 4eKZkBTqEXF-vbq_ypIo9g _model_server_result.datetime_utc '2024-11-23 23:43:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ao9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1284}' # _entry.id 5AO9 # _exptl.entry_id 5AO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AO9 _cell.length_a 61.64 _cell.length_b 71.07 _cell.length_c 75.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 92 n n N1 C6 EPE sing 93 n n N1 C9 EPE sing 94 n n C2 C3 EPE sing 95 n n C2 H21 EPE sing 96 n n C2 H22 EPE sing 97 n n C3 N4 EPE sing 98 n n C3 H31 EPE sing 99 n n C3 H32 EPE sing 100 n n N4 C5 EPE sing 101 n n N4 C7 EPE sing 102 n n C5 C6 EPE sing 103 n n C5 H51 EPE sing 104 n n C5 H52 EPE sing 105 n n C6 H61 EPE sing 106 n n C6 H62 EPE sing 107 n n C7 C8 EPE sing 108 n n C7 H71 EPE sing 109 n n C7 H72 EPE sing 110 n n C8 O8 EPE sing 111 n n C8 H81 EPE sing 112 n n C8 H82 EPE sing 113 n n O8 HO8 EPE sing 114 n n C9 C10 EPE sing 115 n n C9 H91 EPE sing 116 n n C9 H92 EPE sing 117 n n C10 S EPE sing 118 n n C10 H101 EPE sing 119 n n C10 H102 EPE sing 120 n n S O1S EPE doub 121 n n S O2S EPE doub 122 n n S O3S EPE sing 123 n n O3S HOS3 EPE sing 124 n n # _atom_sites.entry_id 5AO9 _atom_sites.fract_transf_matrix[1][1] 0.016223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 1284 1284 EPE EPE . C 3 PE8 A 1 1285 1285 PE8 PE8 . D 4 PEG A 1 1286 1286 PEG PEG . E 4 PEG A 1 1287 1287 PEG PEG . F 5 PGE A 1 1288 1288 PGE PGE . G 5 PGE A 1 1289 1289 PGE PGE . H 6 EDO A 1 1290 1290 EDO EDO . I 6 EDO A 1 1291 1291 EDO EDO . J 6 EDO A 1 1292 1292 EDO EDO . K 6 EDO A 1 1293 1293 EDO EDO . L 6 EDO A 1 1294 1294 EDO EDO . M 6 EDO A 1 1295 1295 EDO EDO . N 6 EDO A 1 1296 1296 EDO EDO . O 6 EDO A 1 1297 1297 EDO EDO . P 7 CL A 1 1298 1298 CL CL . Q 7 CL A 1 1299 1299 CL CL . R 8 HOH A 1 2001 2001 HOH HOH . R 8 HOH A 2 2002 2002 HOH HOH . R 8 HOH A 3 2003 2003 HOH HOH . R 8 HOH A 4 2004 2004 HOH HOH . R 8 HOH A 5 2005 2005 HOH HOH . R 8 HOH A 6 2006 2006 HOH HOH . R 8 HOH A 7 2007 2007 HOH HOH . R 8 HOH A 8 2008 2008 HOH HOH . R 8 HOH A 9 2009 2009 HOH HOH . R 8 HOH A 10 2010 2010 HOH HOH . R 8 HOH A 11 2011 2011 HOH HOH . R 8 HOH A 12 2012 2012 HOH HOH . R 8 HOH A 13 2013 2013 HOH HOH . R 8 HOH A 14 2014 2014 HOH HOH . R 8 HOH A 15 2015 2015 HOH HOH . R 8 HOH A 16 2016 2016 HOH HOH . R 8 HOH A 17 2017 2017 HOH HOH . R 8 HOH A 18 2018 2018 HOH HOH . R 8 HOH A 19 2019 2019 HOH HOH . R 8 HOH A 20 2020 2020 HOH HOH . R 8 HOH A 21 2021 2021 HOH HOH . R 8 HOH A 22 2022 2022 HOH HOH . R 8 HOH A 23 2023 2023 HOH HOH . R 8 HOH A 24 2024 2024 HOH HOH . R 8 HOH A 25 2025 2025 HOH HOH . R 8 HOH A 26 2026 2026 HOH HOH . R 8 HOH A 27 2027 2027 HOH HOH . R 8 HOH A 28 2028 2028 HOH HOH . R 8 HOH A 29 2029 2029 HOH HOH . R 8 HOH A 30 2030 2030 HOH HOH . R 8 HOH A 31 2031 2031 HOH HOH . R 8 HOH A 32 2032 2032 HOH HOH . R 8 HOH A 33 2033 2033 HOH HOH . R 8 HOH A 34 2034 2034 HOH HOH . R 8 HOH A 35 2035 2035 HOH HOH . R 8 HOH A 36 2036 2036 HOH HOH . R 8 HOH A 37 2037 2037 HOH HOH . R 8 HOH A 38 2038 2038 HOH HOH . R 8 HOH A 39 2039 2039 HOH HOH . R 8 HOH A 40 2040 2040 HOH HOH . R 8 HOH A 41 2041 2041 HOH HOH . R 8 HOH A 42 2042 2042 HOH HOH . R 8 HOH A 43 2043 2043 HOH HOH . R 8 HOH A 44 2044 2044 HOH HOH . R 8 HOH A 45 2045 2045 HOH HOH . R 8 HOH A 46 2046 2046 HOH HOH . R 8 HOH A 47 2047 2047 HOH HOH . R 8 HOH A 48 2048 2048 HOH HOH . R 8 HOH A 49 2049 2049 HOH HOH . R 8 HOH A 50 2050 2050 HOH HOH . R 8 HOH A 51 2051 2051 HOH HOH . R 8 HOH A 52 2052 2052 HOH HOH . R 8 HOH A 53 2053 2053 HOH HOH . R 8 HOH A 54 2054 2054 HOH HOH . R 8 HOH A 55 2055 2055 HOH HOH . R 8 HOH A 56 2056 2056 HOH HOH . R 8 HOH A 57 2057 2057 HOH HOH . R 8 HOH A 58 2058 2058 HOH HOH . R 8 HOH A 59 2059 2059 HOH HOH . R 8 HOH A 60 2060 2060 HOH HOH . R 8 HOH A 61 2061 2061 HOH HOH . R 8 HOH A 62 2062 2062 HOH HOH . R 8 HOH A 63 2063 2063 HOH HOH . R 8 HOH A 64 2064 2064 HOH HOH . R 8 HOH A 65 2065 2065 HOH HOH . R 8 HOH A 66 2066 2066 HOH HOH . R 8 HOH A 67 2067 2067 HOH HOH . R 8 HOH A 68 2068 2068 HOH HOH . R 8 HOH A 69 2069 2069 HOH HOH . R 8 HOH A 70 2070 2070 HOH HOH . R 8 HOH A 71 2071 2071 HOH HOH . R 8 HOH A 72 2072 2072 HOH HOH . R 8 HOH A 73 2073 2073 HOH HOH . R 8 HOH A 74 2074 2074 HOH HOH . R 8 HOH A 75 2075 2075 HOH HOH . R 8 HOH A 76 2076 2076 HOH HOH . R 8 HOH A 77 2077 2077 HOH HOH . R 8 HOH A 78 2078 2078 HOH HOH . R 8 HOH A 79 2079 2079 HOH HOH . R 8 HOH A 80 2080 2080 HOH HOH . R 8 HOH A 81 2081 2081 HOH HOH . R 8 HOH A 82 2082 2082 HOH HOH . R 8 HOH A 83 2083 2083 HOH HOH . R 8 HOH A 84 2084 2084 HOH HOH . R 8 HOH A 85 2085 2085 HOH HOH . R 8 HOH A 86 2086 2086 HOH HOH . R 8 HOH A 87 2087 2087 HOH HOH . R 8 HOH A 88 2088 2088 HOH HOH . R 8 HOH A 89 2089 2089 HOH HOH . R 8 HOH A 90 2090 2090 HOH HOH . R 8 HOH A 91 2091 2091 HOH HOH . R 8 HOH A 92 2092 2092 HOH HOH . R 8 HOH A 93 2093 2093 HOH HOH . R 8 HOH A 94 2094 2094 HOH HOH . R 8 HOH A 95 2095 2095 HOH HOH . R 8 HOH A 96 2096 2096 HOH HOH . R 8 HOH A 97 2097 2097 HOH HOH . R 8 HOH A 98 2098 2098 HOH HOH . R 8 HOH A 99 2099 2099 HOH HOH . R 8 HOH A 100 2100 2100 HOH HOH . R 8 HOH A 101 2101 2101 HOH HOH . R 8 HOH A 102 2102 2102 HOH HOH . R 8 HOH A 103 2103 2103 HOH HOH . R 8 HOH A 104 2104 2104 HOH HOH . R 8 HOH A 105 2105 2105 HOH HOH . R 8 HOH A 106 2106 2106 HOH HOH . R 8 HOH A 107 2107 2107 HOH HOH . R 8 HOH A 108 2108 2108 HOH HOH . R 8 HOH A 109 2109 2109 HOH HOH . R 8 HOH A 110 2110 2110 HOH HOH . R 8 HOH A 111 2111 2111 HOH HOH . R 8 HOH A 112 2112 2112 HOH HOH . R 8 HOH A 113 2113 2113 HOH HOH . R 8 HOH A 114 2114 2114 HOH HOH . R 8 HOH A 115 2115 2115 HOH HOH . R 8 HOH A 116 2116 2116 HOH HOH . R 8 HOH A 117 2117 2117 HOH HOH . R 8 HOH A 118 2118 2118 HOH HOH . R 8 HOH A 119 2119 2119 HOH HOH . R 8 HOH A 120 2120 2120 HOH HOH . R 8 HOH A 121 2121 2121 HOH HOH . R 8 HOH A 122 2122 2122 HOH HOH . R 8 HOH A 123 2123 2123 HOH HOH . R 8 HOH A 124 2124 2124 HOH HOH . R 8 HOH A 125 2125 2125 HOH HOH . R 8 HOH A 126 2126 2126 HOH HOH . R 8 HOH A 127 2127 2127 HOH HOH . R 8 HOH A 128 2128 2128 HOH HOH . R 8 HOH A 129 2129 2129 HOH HOH . R 8 HOH A 130 2130 2130 HOH HOH . R 8 HOH A 131 2131 2131 HOH HOH . R 8 HOH A 132 2132 2132 HOH HOH . R 8 HOH A 133 2133 2133 HOH HOH . R 8 HOH A 134 2134 2134 HOH HOH . R 8 HOH A 135 2135 2135 HOH HOH . R 8 HOH A 136 2136 2136 HOH HOH . R 8 HOH A 137 2137 2137 HOH HOH . R 8 HOH A 138 2138 2138 HOH HOH . R 8 HOH A 139 2139 2139 HOH HOH . R 8 HOH A 140 2140 2140 HOH HOH . R 8 HOH A 141 2141 2141 HOH HOH . R 8 HOH A 142 2142 2142 HOH HOH . R 8 HOH A 143 2143 2143 HOH HOH . R 8 HOH A 144 2144 2144 HOH HOH . R 8 HOH A 145 2145 2145 HOH HOH . R 8 HOH A 146 2146 2146 HOH HOH . R 8 HOH A 147 2147 2147 HOH HOH . R 8 HOH A 148 2148 2148 HOH HOH . R 8 HOH A 149 2149 2149 HOH HOH . R 8 HOH A 150 2150 2150 HOH HOH . R 8 HOH A 151 2151 2151 HOH HOH . R 8 HOH A 152 2152 2152 HOH HOH . R 8 HOH A 153 2153 2153 HOH HOH . R 8 HOH A 154 2154 2154 HOH HOH . R 8 HOH A 155 2155 2155 HOH HOH . R 8 HOH A 156 2156 2156 HOH HOH . R 8 HOH A 157 2157 2157 HOH HOH . R 8 HOH A 158 2158 2158 HOH HOH . R 8 HOH A 159 2159 2159 HOH HOH . R 8 HOH A 160 2160 2160 HOH HOH . R 8 HOH A 161 2161 2161 HOH HOH . R 8 HOH A 162 2162 2162 HOH HOH . R 8 HOH A 163 2163 2163 HOH HOH . R 8 HOH A 164 2164 2164 HOH HOH . R 8 HOH A 165 2165 2165 HOH HOH . R 8 HOH A 166 2166 2166 HOH HOH . R 8 HOH A 167 2167 2167 HOH HOH . R 8 HOH A 168 2168 2168 HOH HOH . R 8 HOH A 169 2169 2169 HOH HOH . R 8 HOH A 170 2170 2170 HOH HOH . R 8 HOH A 171 2171 2171 HOH HOH . R 8 HOH A 172 2172 2172 HOH HOH . R 8 HOH A 173 2173 2173 HOH HOH . R 8 HOH A 174 2174 2174 HOH HOH . R 8 HOH A 175 2175 2175 HOH HOH . R 8 HOH A 176 2176 2176 HOH HOH . R 8 HOH A 177 2177 2177 HOH HOH . R 8 HOH A 178 2178 2178 HOH HOH . R 8 HOH A 179 2179 2179 HOH HOH . R 8 HOH A 180 2180 2180 HOH HOH . R 8 HOH A 181 2181 2181 HOH HOH . R 8 HOH A 182 2182 2182 HOH HOH . R 8 HOH A 183 2183 2183 HOH HOH . R 8 HOH A 184 2184 2184 HOH HOH . R 8 HOH A 185 2185 2185 HOH HOH . R 8 HOH A 186 2186 2186 HOH HOH . R 8 HOH A 187 2187 2187 HOH HOH . R 8 HOH A 188 2188 2188 HOH HOH . R 8 HOH A 189 2189 2189 HOH HOH . R 8 HOH A 190 2190 2190 HOH HOH . R 8 HOH A 191 2191 2191 HOH HOH . R 8 HOH A 192 2192 2192 HOH HOH . R 8 HOH A 193 2193 2193 HOH HOH . R 8 HOH A 194 2194 2194 HOH HOH . R 8 HOH A 195 2195 2195 HOH HOH . R 8 HOH A 196 2196 2196 HOH HOH . R 8 HOH A 197 2197 2197 HOH HOH . R 8 HOH A 198 2198 2198 HOH HOH . R 8 HOH A 199 2199 2199 HOH HOH . R 8 HOH A 200 2200 2200 HOH HOH . R 8 HOH A 201 2201 2201 HOH HOH . R 8 HOH A 202 2202 2202 HOH HOH . R 8 HOH A 203 2203 2203 HOH HOH . R 8 HOH A 204 2204 2204 HOH HOH . R 8 HOH A 205 2205 2205 HOH HOH . R 8 HOH A 206 2206 2206 HOH HOH . R 8 HOH A 207 2207 2207 HOH HOH . R 8 HOH A 208 2208 2208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -8.115 37.722 -2.055 1 55.1 ? N1 EPE 1284 A 1 HETATM 2 C C2 EPE . . . B 2 -8.482 38.799 -2.984 1 70.44 ? C2 EPE 1284 A 1 HETATM 3 C C3 EPE . . . B 2 -7.819 38.418 -4.311 1 86.68 ? C3 EPE 1284 A 1 HETATM 4 N N4 EPE . . . B 2 -8.219 37.078 -4.83 1 95.35 ? N4 EPE 1284 A 1 HETATM 5 C C5 EPE . . . B 2 -8.423 36.03 -3.791 1 72.03 ? C5 EPE 1284 A 1 HETATM 6 C C6 EPE . . . B 2 -8.924 36.55 -2.444 1 48.99 ? C6 EPE 1284 A 1 HETATM 7 C C7 EPE . . . B 2 -7.199 36.647 -5.826 1 106.14 ? C7 EPE 1284 A 1 HETATM 8 C C8 EPE . . . B 2 -7.61 35.424 -6.653 1 115.17 ? C8 EPE 1284 A 1 HETATM 9 O O8 EPE . . . B 2 -8.743 35.722 -7.482 1 104.72 ? O8 EPE 1284 A 1 HETATM 10 C C9 EPE . . . B 2 -8.296 38.051 -0.623 1 35.14 ? C9 EPE 1284 A 1 HETATM 11 C C10 EPE . . . B 2 -7.334 39.087 -0.011 1 22.5 ? C10 EPE 1284 A 1 HETATM 12 S S EPE . . . B 2 -7.197 38.777 1.638 1 19.75 ? S EPE 1284 A 1 HETATM 13 O O1S EPE . . . B 2 -6.365 37.567 1.708 1 20.46 ? O1S EPE 1284 A 1 HETATM 14 O O2S EPE . . . B 2 -8.556 38.612 2.154 1 21.39 ? O2S EPE 1284 A 1 HETATM 15 O O3S EPE . . . B 2 -6.581 39.944 2.312 1 20.05 ? O3S EPE 1284 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #