data_5AP0
#
_model_server_result.job_id            zKk5jkK-pE7towXTHBY8zw 
_model_server_result.datetime_utc      '2024-11-26 00:16:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ap0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1795}' 
#
_entry.id    5AP0 
#
_exptl.entry_id    5AP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.549 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-CYCLOPENTYL-2-[[2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]-PHENYL]AMINO]-7-METHYL-7,9-DIHYDRO-8H-PURIN-8-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AP0 
_cell.length_a            70.93 
_cell.length_b            111.96 
_cell.length_c            113.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C24 H32 N6 O3' 
_chem_comp.formula_weight    452.549 
_chem_comp.id                AU5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-CYCLOPENTYL-2-[[2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]-PHENYL]AMINO]-7-METHYL-7,9-DIHYDRO-8H-PURIN-8-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C4 AU5 doub 70 n n 
C4 N2 AU5 sing 71 n n 
C4 N3 AU5 sing 72 n n 
N2 C10 AU5 sing 73 n n 
N2 C2 AU5 sing 74 n n 
C2 C3 AU5 sing 75 n y 
C2 C1 AU5 doub 76 n y 
C3 N AU5 doub 77 n y 
N C AU5 sing 78 n y 
N3 C5 AU5 sing 79 n n 
N3 C1 AU5 sing 80 n n 
C5 C9 AU5 sing 81 n n 
C5 C6 AU5 sing 82 n n 
C9 C8 AU5 sing 83 n n 
C8 C7 AU5 sing 84 n n 
C7 C6 AU5 sing 85 n n 
C1 N1 AU5 sing 86 n y 
N1 C AU5 doub 87 n y 
C N4 AU5 sing 88 n n 
N4 C11 AU5 sing 89 n n 
C11 C16 AU5 sing 90 n y 
C11 C12 AU5 doub 91 n y 
C16 O1 AU5 sing 92 n n 
C16 C15 AU5 doub 93 n y 
O1 C17 AU5 sing 94 n n 
C15 C14 AU5 sing 95 n y 
C14 C13 AU5 doub 96 n y 
C14 O2 AU5 sing 97 n n 
C13 C12 AU5 sing 98 n y 
O2 C18 AU5 sing 99 n n 
C18 C22 AU5 sing 100 n n 
C18 C19 AU5 sing 101 n n 
C22 C21 AU5 sing 102 n n 
C21 N5 AU5 sing 103 n n 
N5 C23 AU5 sing 104 n n 
N5 C20 AU5 sing 105 n n 
C20 C19 AU5 sing 106 n n 
C10 H101 AU5 sing 107 n n 
C10 H102 AU5 sing 108 n n 
C10 H103 AU5 sing 109 n n 
C3 H3 AU5 sing 110 n n 
C5 H5 AU5 sing 111 n n 
C9 H91C AU5 sing 112 n n 
C9 H92C AU5 sing 113 n n 
C6 H61C AU5 sing 114 n n 
C6 H62C AU5 sing 115 n n 
C8 H81C AU5 sing 116 n n 
C8 H82C AU5 sing 117 n n 
C7 H71C AU5 sing 118 n n 
C7 H72C AU5 sing 119 n n 
N4 H4 AU5 sing 120 n n 
C12 H12 AU5 sing 121 n n 
C15 H15 AU5 sing 122 n n 
C17 H171 AU5 sing 123 n n 
C17 H172 AU5 sing 124 n n 
C17 H173 AU5 sing 125 n n 
C13 H13 AU5 sing 126 n n 
C18 H18 AU5 sing 127 n n 
C22 H221 AU5 sing 128 n n 
C22 H222 AU5 sing 129 n n 
C19 H191 AU5 sing 130 n n 
C19 H192 AU5 sing 131 n n 
C21 H211 AU5 sing 132 n n 
C21 H212 AU5 sing 133 n n 
C23 H231 AU5 sing 134 n n 
C23 H232 AU5 sing 135 n n 
C23 H233 AU5 sing 136 n n 
C20 H201 AU5 sing 137 n n 
C20 H202 AU5 sing 138 n n 
#
_atom_sites.entry_id                     5AP0 
_atom_sites.fract_transf_matrix[1][1]    0.014098 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AU5 A 1 1795 1795 AU5 AU5 . 
C 3 P4C A 1 1796 1796 P4C P4C . 
D 3 P4C A 1 1797 1797 P4C P4C . 
E 4 DMS A 1 1798 1798 DMS DMS . 
F 4 DMS A 1 1799 1799 DMS DMS . 
G 5 EDO A 1 1800 1800 EDO EDO . 
H 5 EDO A 1 1801 1801 EDO EDO . 
I 5 EDO A 1 1802 1802 EDO EDO . 
J 5 EDO A 1 1803 1803 EDO EDO . 
K 5 EDO A 1 1804 1804 EDO EDO . 
L 5 EDO A 1 1805 1805 EDO EDO . 
M 5 EDO A 1 1806 1806 EDO EDO . 
N 5 EDO A 1 1807 1807 EDO EDO . 
O 5 EDO A 1 1808 1808 EDO EDO . 
P 5 EDO A 1 1809 1809 EDO EDO . 
Q 5 EDO A 1 1810 1810 EDO EDO . 
R 5 EDO A 1 1811 1811 EDO EDO . 
S 5 EDO A 1 1812 1812 EDO EDO . 
T 4 DMS A 1 1813 1813 DMS DMS . 
U 6 HOH A 1 2001 2001 HOH HOH . 
U 6 HOH A 2 2002 2002 HOH HOH . 
U 6 HOH A 3 2003 2003 HOH HOH . 
U 6 HOH A 4 2004 2004 HOH HOH . 
U 6 HOH A 5 2005 2005 HOH HOH . 
U 6 HOH A 6 2006 2006 HOH HOH . 
U 6 HOH A 7 2007 2007 HOH HOH . 
U 6 HOH A 8 2008 2008 HOH HOH . 
U 6 HOH A 9 2009 2009 HOH HOH . 
U 6 HOH A 10 2010 2010 HOH HOH . 
U 6 HOH A 11 2011 2011 HOH HOH . 
U 6 HOH A 12 2012 2012 HOH HOH . 
U 6 HOH A 13 2013 2013 HOH HOH . 
U 6 HOH A 14 2014 2014 HOH HOH . 
U 6 HOH A 15 2015 2015 HOH HOH . 
U 6 HOH A 16 2016 2016 HOH HOH . 
U 6 HOH A 17 2017 2017 HOH HOH . 
U 6 HOH A 18 2018 2018 HOH HOH . 
U 6 HOH A 19 2019 2019 HOH HOH . 
U 6 HOH A 20 2020 2020 HOH HOH . 
U 6 HOH A 21 2021 2021 HOH HOH . 
U 6 HOH A 22 2022 2022 HOH HOH . 
U 6 HOH A 23 2023 2023 HOH HOH . 
U 6 HOH A 24 2024 2024 HOH HOH . 
U 6 HOH A 25 2025 2025 HOH HOH . 
U 6 HOH A 26 2026 2026 HOH HOH . 
U 6 HOH A 27 2027 2027 HOH HOH . 
U 6 HOH A 28 2028 2028 HOH HOH . 
U 6 HOH A 29 2029 2029 HOH HOH . 
U 6 HOH A 30 2030 2030 HOH HOH . 
U 6 HOH A 31 2031 2031 HOH HOH . 
U 6 HOH A 32 2032 2032 HOH HOH . 
U 6 HOH A 33 2033 2033 HOH HOH . 
U 6 HOH A 34 2034 2034 HOH HOH . 
U 6 HOH A 35 2035 2035 HOH HOH . 
U 6 HOH A 36 2036 2036 HOH HOH . 
U 6 HOH A 37 2037 2037 HOH HOH . 
U 6 HOH A 38 2038 2038 HOH HOH . 
U 6 HOH A 39 2039 2039 HOH HOH . 
U 6 HOH A 40 2040 2040 HOH HOH . 
U 6 HOH A 41 2041 2041 HOH HOH . 
U 6 HOH A 42 2042 2042 HOH HOH . 
U 6 HOH A 43 2043 2043 HOH HOH . 
U 6 HOH A 44 2044 2044 HOH HOH . 
U 6 HOH A 45 2045 2045 HOH HOH . 
U 6 HOH A 46 2046 2046 HOH HOH . 
U 6 HOH A 47 2047 2047 HOH HOH . 
U 6 HOH A 48 2048 2048 HOH HOH . 
U 6 HOH A 49 2049 2049 HOH HOH . 
U 6 HOH A 50 2050 2050 HOH HOH . 
U 6 HOH A 51 2051 2051 HOH HOH . 
U 6 HOH A 52 2052 2052 HOH HOH . 
U 6 HOH A 53 2053 2053 HOH HOH . 
U 6 HOH A 54 2054 2054 HOH HOH . 
U 6 HOH A 55 2055 2055 HOH HOH . 
U 6 HOH A 56 2056 2056 HOH HOH . 
U 6 HOH A 57 2057 2057 HOH HOH . 
U 6 HOH A 58 2058 2058 HOH HOH . 
U 6 HOH A 59 2059 2059 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O AU5 . . . B 2 -2.827 15.945 -18.002 1 58.7 ? O AU5 1795 A 1 
HETATM 2 C C4 AU5 . . . B 2 -2.09 14.991 -18.004 1 56.03 ? C4 AU5 1795 A 1 
HETATM 3 N N2 AU5 . . . B 2 -1.72 14.258 -19.149 1 53.55 ? N2 AU5 1795 A 1 
HETATM 4 C C10 AU5 . . . B 2 -2.187 14.557 -20.488 1 52.16 ? C10 AU5 1795 A 1 
HETATM 5 C C2 AU5 . . . B 2 -0.866 13.224 -18.759 1 51.16 ? C2 AU5 1795 A 1 
HETATM 6 C C3 AU5 . . . B 2 -0.206 12.215 -19.42 1 48.37 ? C3 AU5 1795 A 1 
HETATM 7 N N AU5 . . . B 2 0.546 11.333 -18.753 1 49.34 ? N AU5 1795 A 1 
HETATM 8 N N3 AU5 . . . B 2 -1.45 14.394 -16.886 1 55.74 ? N3 AU5 1795 A 1 
HETATM 9 C C5 AU5 . . . B 2 -1.544 14.866 -15.498 1 56.67 ? C5 AU5 1795 A 1 
HETATM 10 C C9 AU5 . . . B 2 -0.174 15.254 -14.921 1 57.04 ? C9 AU5 1795 A 1 
HETATM 11 C C8 AU5 . . . B 2 -0.253 14.989 -13.421 1 58.02 ? C8 AU5 1795 A 1 
HETATM 12 C C7 AU5 . . . B 2 -1.404 14.011 -13.197 1 58.09 ? C7 AU5 1795 A 1 
HETATM 13 C C6 AU5 . . . B 2 -2.066 13.777 -14.553 1 57.82 ? C6 AU5 1795 A 1 
HETATM 14 C C1 AU5 . . . B 2 -0.705 13.303 -17.342 1 52.47 ? C1 AU5 1795 A 1 
HETATM 15 N N1 AU5 . . . B 2 0.026 12.452 -16.603 1 52.52 ? N1 AU5 1795 A 1 
HETATM 16 C C AU5 . . . B 2 0.614 11.481 -17.379 1 51.22 ? C AU5 1795 A 1 
HETATM 17 N N4 AU5 . . . B 2 1.347 10.48 -16.778 1 53.33 ? N4 AU5 1795 A 1 
HETATM 18 C C11 AU5 . . . B 2 1.609 10.285 -15.41 1 52.26 ? C11 AU5 1795 A 1 
HETATM 19 C C16 AU5 . . . B 2 1.541 9.029 -14.818 1 56.36 ? C16 AU5 1795 A 1 
HETATM 20 O O1 AU5 . . . B 2 1.165 7.945 -15.557 1 62.91 ? O1 AU5 1795 A 1 
HETATM 21 C C17 AU5 . . . B 2 2.167 6.966 -15.641 1 63.03 ? C17 AU5 1795 A 1 
HETATM 22 C C15 AU5 . . . B 2 1.824 8.838 -13.476 1 55.68 ? C15 AU5 1795 A 1 
HETATM 23 C C14 AU5 . . . B 2 2.178 9.932 -12.718 1 60.18 ? C14 AU5 1795 A 1 
HETATM 24 C C13 AU5 . . . B 2 2.237 11.215 -13.273 1 58.12 ? C13 AU5 1795 A 1 
HETATM 25 C C12 AU5 . . . B 2 1.956 11.386 -14.616 1 52.55 ? C12 AU5 1795 A 1 
HETATM 26 O O2 AU5 . . . B 2 2.542 9.789 -11.413 1 69 ? O2 AU5 1795 A 1 
HETATM 27 C C18 AU5 . . . B 2 1.812 10.491 -10.435 1 76.92 ? C18 AU5 1795 A 1 
HETATM 28 C C22 AU5 . . . B 2 2.703 10.543 -9.186 1 79.69 ? C22 AU5 1795 A 1 
HETATM 29 C C21 AU5 . . . B 2 1.897 11.081 -7.999 1 84.09 ? C21 AU5 1795 A 1 
HETATM 30 N N5 AU5 . . . B 2 0.696 10.271 -7.698 1 87.97 ? N5 AU5 1795 A 1 
HETATM 31 C C23 AU5 . . . B 2 -0.042 10.796 -6.522 1 88.14 ? C23 AU5 1795 A 1 
HETATM 32 C C20 AU5 . . . B 2 -0.152 10.175 -8.911 1 85.74 ? C20 AU5 1795 A 1 
HETATM 33 C C19 AU5 . . . B 2 0.581 9.625 -10.148 1 82.07 ? C19 AU5 1795 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#