data_5AP0
#
_model_server_result.job_id            -gHK3qtfdNKeKr9gjVmbpQ 
_model_server_result.datetime_utc      '2024-11-22 15:38:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ap0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1797}' 
#
_entry.id    5AP0 
#
_exptl.entry_id    5AP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.367 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AP0 
_cell.length_a            70.93 
_cell.length_b            111.96 
_cell.length_c            113.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C14 H28 O8' 
_chem_comp.formula_weight    324.367 
_chem_comp.id                P4C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYETHYLENE 400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 P4C sing 324 n n 
O1 HO1 P4C sing 325 n n 
C2 C3 P4C sing 326 n n 
C2 H21A P4C sing 327 n n 
C2 H22 P4C sing 328 n n 
C3 O4 P4C sing 329 n n 
C3 H31 P4C sing 330 n n 
C3 H32 P4C sing 331 n n 
O4 C5 P4C sing 332 n n 
C5 C6 P4C sing 333 n n 
C5 H51 P4C sing 334 n n 
C5 H52 P4C sing 335 n n 
C6 O7 P4C sing 336 n n 
C6 H61 P4C sing 337 n n 
C6 H62 P4C sing 338 n n 
O7 C8 P4C sing 339 n n 
C8 C9 P4C sing 340 n n 
C8 H81 P4C sing 341 n n 
C8 H82 P4C sing 342 n n 
C9 O10 P4C sing 343 n n 
C9 H91 P4C sing 344 n n 
C9 H92 P4C sing 345 n n 
O10 C11 P4C sing 346 n n 
C11 C12 P4C sing 347 n n 
C11 H111 P4C sing 348 n n 
C11 H112 P4C sing 349 n n 
C12 O13 P4C sing 350 n n 
C12 H121 P4C sing 351 n n 
C12 H122 P4C sing 352 n n 
O13 C14 P4C sing 353 n n 
C14 C15 P4C sing 354 n n 
C14 H141 P4C sing 355 n n 
C14 H142 P4C sing 356 n n 
C15 O16 P4C sing 357 n n 
C15 H151 P4C sing 358 n n 
C15 H152 P4C sing 359 n n 
O16 C17 P4C sing 360 n n 
C17 C18 P4C sing 361 n n 
C17 H171 P4C sing 362 n n 
C17 H172 P4C sing 363 n n 
C18 O19 P4C sing 364 n n 
C18 H181 P4C sing 365 n n 
C18 H182 P4C sing 366 n n 
O19 C20 P4C sing 367 n n 
C20 C21 P4C sing 368 n n 
C20 H201 P4C sing 369 n n 
C20 H202 P4C sing 370 n n 
C21 O22 P4C doub 371 n n 
C21 H21 P4C sing 372 n n 
#
_atom_sites.entry_id                     5AP0 
_atom_sites.fract_transf_matrix[1][1]    0.014098 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AU5 A 1 1795 1795 AU5 AU5 . 
C 3 P4C A 1 1796 1796 P4C P4C . 
D 3 P4C A 1 1797 1797 P4C P4C . 
E 4 DMS A 1 1798 1798 DMS DMS . 
F 4 DMS A 1 1799 1799 DMS DMS . 
G 5 EDO A 1 1800 1800 EDO EDO . 
H 5 EDO A 1 1801 1801 EDO EDO . 
I 5 EDO A 1 1802 1802 EDO EDO . 
J 5 EDO A 1 1803 1803 EDO EDO . 
K 5 EDO A 1 1804 1804 EDO EDO . 
L 5 EDO A 1 1805 1805 EDO EDO . 
M 5 EDO A 1 1806 1806 EDO EDO . 
N 5 EDO A 1 1807 1807 EDO EDO . 
O 5 EDO A 1 1808 1808 EDO EDO . 
P 5 EDO A 1 1809 1809 EDO EDO . 
Q 5 EDO A 1 1810 1810 EDO EDO . 
R 5 EDO A 1 1811 1811 EDO EDO . 
S 5 EDO A 1 1812 1812 EDO EDO . 
T 4 DMS A 1 1813 1813 DMS DMS . 
U 6 HOH A 1 2001 2001 HOH HOH . 
U 6 HOH A 2 2002 2002 HOH HOH . 
U 6 HOH A 3 2003 2003 HOH HOH . 
U 6 HOH A 4 2004 2004 HOH HOH . 
U 6 HOH A 5 2005 2005 HOH HOH . 
U 6 HOH A 6 2006 2006 HOH HOH . 
U 6 HOH A 7 2007 2007 HOH HOH . 
U 6 HOH A 8 2008 2008 HOH HOH . 
U 6 HOH A 9 2009 2009 HOH HOH . 
U 6 HOH A 10 2010 2010 HOH HOH . 
U 6 HOH A 11 2011 2011 HOH HOH . 
U 6 HOH A 12 2012 2012 HOH HOH . 
U 6 HOH A 13 2013 2013 HOH HOH . 
U 6 HOH A 14 2014 2014 HOH HOH . 
U 6 HOH A 15 2015 2015 HOH HOH . 
U 6 HOH A 16 2016 2016 HOH HOH . 
U 6 HOH A 17 2017 2017 HOH HOH . 
U 6 HOH A 18 2018 2018 HOH HOH . 
U 6 HOH A 19 2019 2019 HOH HOH . 
U 6 HOH A 20 2020 2020 HOH HOH . 
U 6 HOH A 21 2021 2021 HOH HOH . 
U 6 HOH A 22 2022 2022 HOH HOH . 
U 6 HOH A 23 2023 2023 HOH HOH . 
U 6 HOH A 24 2024 2024 HOH HOH . 
U 6 HOH A 25 2025 2025 HOH HOH . 
U 6 HOH A 26 2026 2026 HOH HOH . 
U 6 HOH A 27 2027 2027 HOH HOH . 
U 6 HOH A 28 2028 2028 HOH HOH . 
U 6 HOH A 29 2029 2029 HOH HOH . 
U 6 HOH A 30 2030 2030 HOH HOH . 
U 6 HOH A 31 2031 2031 HOH HOH . 
U 6 HOH A 32 2032 2032 HOH HOH . 
U 6 HOH A 33 2033 2033 HOH HOH . 
U 6 HOH A 34 2034 2034 HOH HOH . 
U 6 HOH A 35 2035 2035 HOH HOH . 
U 6 HOH A 36 2036 2036 HOH HOH . 
U 6 HOH A 37 2037 2037 HOH HOH . 
U 6 HOH A 38 2038 2038 HOH HOH . 
U 6 HOH A 39 2039 2039 HOH HOH . 
U 6 HOH A 40 2040 2040 HOH HOH . 
U 6 HOH A 41 2041 2041 HOH HOH . 
U 6 HOH A 42 2042 2042 HOH HOH . 
U 6 HOH A 43 2043 2043 HOH HOH . 
U 6 HOH A 44 2044 2044 HOH HOH . 
U 6 HOH A 45 2045 2045 HOH HOH . 
U 6 HOH A 46 2046 2046 HOH HOH . 
U 6 HOH A 47 2047 2047 HOH HOH . 
U 6 HOH A 48 2048 2048 HOH HOH . 
U 6 HOH A 49 2049 2049 HOH HOH . 
U 6 HOH A 50 2050 2050 HOH HOH . 
U 6 HOH A 51 2051 2051 HOH HOH . 
U 6 HOH A 52 2052 2052 HOH HOH . 
U 6 HOH A 53 2053 2053 HOH HOH . 
U 6 HOH A 54 2054 2054 HOH HOH . 
U 6 HOH A 55 2055 2055 HOH HOH . 
U 6 HOH A 56 2056 2056 HOH HOH . 
U 6 HOH A 57 2057 2057 HOH HOH . 
U 6 HOH A 58 2058 2058 HOH HOH . 
U 6 HOH A 59 2059 2059 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P4C . . . D 3 20.522 19.951 -27.56 1 100.26 ? O1 P4C 1797 A 1 
HETATM 2 C C2 P4C . . . D 3 20.771 18.644 -28.056 1 98.37 ? C2 P4C 1797 A 1 
HETATM 3 C C3 P4C . . . D 3 20.009 17.64 -27.251 1 95.98 ? C3 P4C 1797 A 1 
HETATM 4 O O4 P4C . . . D 3 20.407 17.691 -25.886 1 92.35 ? O4 P4C 1797 A 1 
HETATM 5 C C5 P4C . . . D 3 20.838 16.433 -25.385 1 87.58 ? C5 P4C 1797 A 1 
HETATM 6 C C6 P4C . . . D 3 20.957 16.469 -23.9 1 83.27 ? C6 P4C 1797 A 1 
HETATM 7 O O7 P4C . . . D 3 21.78 17.545 -23.495 1 82.4 ? O7 P4C 1797 A 1 
HETATM 8 C C8 P4C . . . D 3 22.189 17.482 -22.136 1 85.72 ? C8 P4C 1797 A 1 
HETATM 9 C C9 P4C . . . D 3 23.656 17.74 -22.027 1 89.63 ? C9 P4C 1797 A 1 
HETATM 10 O O10 P4C . . . D 3 23.998 18.927 -22.732 1 93.23 ? O10 P4C 1797 A 1 
HETATM 11 C C11 P4C . . . D 3 25.392 19.052 -22.997 1 93.74 ? C11 P4C 1797 A 1 
HETATM 12 C C12 P4C . . . D 3 25.649 20.248 -23.854 1 92.41 ? C12 P4C 1797 A 1 
HETATM 13 O O13 P4C . . . D 3 25.154 20.007 -25.16 1 92.02 ? O13 P4C 1797 A 1 
HETATM 14 C C14 P4C . . . D 3 25.467 21.048 -26.068 1 92.33 ? C14 P4C 1797 A 1 
HETATM 15 C C15 P4C . . . D 3 24.528 21.009 -27.232 1 92.65 ? C15 P4C 1797 A 1 
HETATM 16 O O16 P4C . . . D 3 24.934 21.901 -28.256 1 92.62 ? O16 P4C 1797 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#