data_5AP3 # _model_server_result.job_id IfIqEVA3LS80tTSdEYcDiQ _model_server_result.datetime_utc '2025-03-05 19:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ap3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1798}' # _entry.id 5AP3 # _exptl.entry_id 5AP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.384 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AP3 _cell.length_a 70.73 _cell.length_b 111.25 _cell.length_c 112.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C14 H30 O7' _chem_comp.formula_weight 310.384 _chem_comp.id 7PE _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 7PE sing 1 n n C21 H211 7PE sing 2 n n C21 H212 7PE sing 3 n n C21 H213 7PE sing 4 n n C20 O19 7PE sing 5 n n C20 H201 7PE sing 6 n n C20 H202 7PE sing 7 n n O19 C18 7PE sing 8 n n C18 C17 7PE sing 9 n n C18 H181 7PE sing 10 n n C18 H182 7PE sing 11 n n C17 O16 7PE sing 12 n n C17 H171 7PE sing 13 n n C17 H172 7PE sing 14 n n O16 C15 7PE sing 15 n n C15 C14 7PE sing 16 n n C15 H151 7PE sing 17 n n C15 H152 7PE sing 18 n n C14 O13 7PE sing 19 n n C14 H141 7PE sing 20 n n C14 H142 7PE sing 21 n n O13 C12 7PE sing 22 n n C12 C11 7PE sing 23 n n C12 H121 7PE sing 24 n n C12 H122 7PE sing 25 n n C11 O10 7PE sing 26 n n C11 H111 7PE sing 27 n n C11 H112 7PE sing 28 n n O10 C9 7PE sing 29 n n C9 C8 7PE sing 30 n n C9 H91 7PE sing 31 n n C9 H92 7PE sing 32 n n C8 O7 7PE sing 33 n n C8 H81 7PE sing 34 n n C8 H82 7PE sing 35 n n O7 C6 7PE sing 36 n n C6 C5 7PE sing 37 n n C6 H61 7PE sing 38 n n C6 H62 7PE sing 39 n n C5 O4 7PE sing 40 n n C5 H51 7PE sing 41 n n C5 H52 7PE sing 42 n n O4 C3 7PE sing 43 n n C3 C2 7PE sing 44 n n C3 H31 7PE sing 45 n n C3 H32 7PE sing 46 n n C2 O1 7PE sing 47 n n C2 H21 7PE sing 48 n n C2 H22 7PE sing 49 n n O1 HO1 7PE sing 50 n n # _atom_sites.entry_id 5AP3 _atom_sites.fract_transf_matrix[1][1] 0.014138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7PE A 1 1795 1795 7PE 7PE . C 2 7PE A 1 1796 1796 7PE 7PE . D 2 7PE A 1 1797 1797 7PE 7PE . E 2 7PE A 1 1798 1798 7PE 7PE . F 3 AU5 A 1 1799 1799 AU5 AU5 . G 4 DMS A 1 1800 1800 DMS DMS . H 5 EDO A 1 1801 1801 EDO EDO . I 5 EDO A 1 1802 1802 EDO EDO . J 5 EDO A 1 1803 1803 EDO EDO . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 7PE . . . E 2 4.097 18.351 142.753 1 110.95 ? O19 7PE 1798 A 1 HETATM 2 C C18 7PE . . . E 2 2.824 18.917 143.022 1 112.04 ? C18 7PE 1798 A 1 HETATM 3 C C17 7PE . . . E 2 1.743 17.941 142.69 1 113.89 ? C17 7PE 1798 A 1 HETATM 4 O O16 7PE . . . E 2 0.47 18.536 142.916 1 115.84 ? O16 7PE 1798 A 1 HETATM 5 C C15 7PE . . . E 2 -0.606 17.606 142.864 1 116.82 ? C15 7PE 1798 A 1 HETATM 6 C C14 7PE . . . E 2 -1.735 18.148 142.042 1 117.17 ? C14 7PE 1798 A 1 HETATM 7 O O13 7PE . . . E 2 -1.349 18.277 140.678 1 117.28 ? O13 7PE 1798 A 1 HETATM 8 C C12 7PE . . . E 2 -2.235 17.629 139.774 1 116.99 ? C12 7PE 1798 A 1 HETATM 9 C C11 7PE . . . E 2 -2.569 18.545 138.638 1 116.33 ? C11 7PE 1798 A 1 HETATM 10 O O10 7PE . . . E 2 -3.382 19.629 139.083 1 116.25 ? O10 7PE 1798 A 1 HETATM 11 C C9 7PE . . . E 2 -2.753 20.905 138.975 1 116.43 ? C9 7PE 1798 A 1 HETATM 12 C C8 7PE . . . E 2 -3.349 21.71 137.86 1 116.63 ? C8 7PE 1798 A 1 HETATM 13 O O7 7PE . . . E 2 -4.736 21.915 138.083 1 117.27 ? O7 7PE 1798 A 1 HETATM 14 C C6 7PE . . . E 2 -5.524 21.737 136.912 1 117.34 ? C6 7PE 1798 A 1 HETATM 15 C C5 7PE . . . E 2 -6.88 21.218 137.278 1 117.11 ? C5 7PE 1798 A 1 HETATM 16 O O4 7PE . . . E 2 -7.655 21.003 136.105 1 116.29 ? O4 7PE 1798 A 1 HETATM 17 C C3 7PE . . . E 2 -9.024 21.346 136.265 1 114.57 ? C3 7PE 1798 A 1 HETATM 18 C C2 7PE . . . E 2 -9.482 22.186 135.112 1 112.69 ? C2 7PE 1798 A 1 HETATM 19 O O1 7PE . . . E 2 -10.869 22.468 135.189 1 111.45 ? O1 7PE 1798 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #