data_5AP4 # _model_server_result.job_id gYx8uQTAqsRoTxXZCgp4fw _model_server_result.datetime_utc '2024-11-25 02:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ap4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1795}' # _entry.id 5AP4 # _exptl.entry_id 5AP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.502 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[3-(cyanomethoxy)-4-(1-methyl-1H-pyrazol-4-yl)phenyl]amino}-2-(cyclohexylamino)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AP4 _cell.length_a 70.42 _cell.length_b 112.08 _cell.length_c 113.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 190 A GLY 685 1_555 A N TPO 191 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C TPO 191 A TPO 686 1_555 A N VAL 192 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C24 H25 N7 O' _chem_comp.formula_weight 427.502 _chem_comp.id O38 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[3-(cyanomethoxy)-4-(1-methyl-1H-pyrazol-4-yl)phenyl]amino}-2-(cyclohexylamino)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C12 O38 trip 296 n n C12 C11 O38 sing 297 n n C15 C16 O38 sing 298 n n C15 C14 O38 sing 299 n n C17 C16 O38 sing 300 n n C17 C18 O38 sing 301 n n N4 C14 O38 sing 302 n n N4 C13 O38 sing 303 n n C11 C13 O38 doub 304 n y C11 C10 O38 sing 305 n y C14 C19 O38 sing 306 n n C19 C18 O38 sing 307 n n C13 N5 O38 sing 308 n y C10 C9 O38 doub 309 n y N5 C8 O38 doub 310 n y C9 C8 O38 sing 311 n y C8 N2 O38 sing 312 n n N2 C7 O38 sing 313 n n C6 C7 O38 sing 314 n y C6 C5 O38 doub 315 n y C7 C20 O38 doub 316 n y C5 C4 O38 sing 317 n y C20 C21 O38 sing 318 n y C4 C21 O38 doub 319 n y C4 C2 O38 sing 320 n n C1 C2 O38 doub 321 n y C1 N O38 sing 322 n y C21 O O38 sing 323 n n C2 C3 O38 sing 324 n y N C O38 sing 325 n n N N1 O38 sing 326 n y O C22 O38 sing 327 n n C3 N1 O38 doub 328 n y C22 C23 O38 sing 329 n n C23 N6 O38 trip 330 n n C22 H1 O38 sing 331 n n C22 H2 O38 sing 332 n n C1 H3 O38 sing 333 n n C3 H4 O38 sing 334 n n C H5 O38 sing 335 n n C H6 O38 sing 336 n n C H7 O38 sing 337 n n C20 H8 O38 sing 338 n n C6 H9 O38 sing 339 n n C5 H10 O38 sing 340 n n N2 H11 O38 sing 341 n n C10 H12 O38 sing 342 n n C9 H13 O38 sing 343 n n N4 H14 O38 sing 344 n n C14 H15 O38 sing 345 n n C19 H16 O38 sing 346 n n C19 H17 O38 sing 347 n n C18 H18 O38 sing 348 n n C18 H19 O38 sing 349 n n C17 H20 O38 sing 350 n n C17 H21 O38 sing 351 n n C16 H22 O38 sing 352 n n C16 H23 O38 sing 353 n n C15 H24 O38 sing 354 n n C15 H25 O38 sing 355 n n # _atom_sites.entry_id 5AP4 _atom_sites.fract_transf_matrix[1][1] 0.014201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O38 A 1 1795 1795 O38 O38 . C 3 7PE A 1 1796 1796 7PE 7PE . D 3 7PE A 1 1797 1797 7PE 7PE . E 4 EDO A 1 1798 1798 EDO EDO . F 4 EDO A 1 1799 1799 EDO EDO . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6 O38 . . . B 2 -0.058 -6.925 -16.029 1 77.18 ? N6 O38 1795 A 1 HETATM 2 C C23 O38 . . . B 2 -1.137 -7.233 -15.877 1 76.64 ? C23 O38 1795 A 1 HETATM 3 C C22 O38 . . . B 2 -2.508 -7.607 -15.657 1 77.35 ? C22 O38 1795 A 1 HETATM 4 O O O38 . . . B 2 -2.6 -8.505 -14.564 1 76.26 ? O O38 1795 A 1 HETATM 5 C C21 O38 . . . B 2 -2.224 -9.839 -14.709 1 72.52 ? C21 O38 1795 A 1 HETATM 6 C C4 O38 . . . B 2 -2.343 -10.652 -13.588 1 76.24 ? C4 O38 1795 A 1 HETATM 7 C C2 O38 . . . B 2 -2.86 -10.193 -12.328 1 82.1 ? C2 O38 1795 A 1 HETATM 8 C C1 O38 . . . B 2 -3.551 -9.017 -12.046 1 84.8 ? C1 O38 1795 A 1 HETATM 9 C C3 O38 . . . B 2 -2.777 -10.89 -11.08 1 83.03 ? C3 O38 1795 A 1 HETATM 10 N N1 O38 . . . B 2 -3.382 -10.188 -10.092 1 84.37 ? N1 O38 1795 A 1 HETATM 11 N N O38 . . . B 2 -3.846 -9.059 -10.69 1 86.1 ? N O38 1795 A 1 HETATM 12 C C O38 . . . B 2 -4.573 -8.036 -9.935 1 86.35 ? C O38 1795 A 1 HETATM 13 C C20 O38 . . . B 2 -1.746 -10.338 -15.931 1 67.42 ? C20 O38 1795 A 1 HETATM 14 C C7 O38 . . . B 2 -1.38 -11.672 -16.024 1 66.58 ? C7 O38 1795 A 1 HETATM 15 C C6 O38 . . . B 2 -1.484 -12.495 -14.913 1 66.82 ? C6 O38 1795 A 1 HETATM 16 C C5 O38 . . . B 2 -1.957 -11.985 -13.725 1 71.45 ? C5 O38 1795 A 1 HETATM 17 N N2 O38 . . . B 2 -0.913 -12.134 -17.265 1 66.95 ? N2 O38 1795 A 1 HETATM 18 C C8 O38 . . . B 2 -0.047 -13.193 -17.473 1 62.07 ? C8 O38 1795 A 1 HETATM 19 N N5 O38 . . . B 2 0.242 -14.02 -16.436 1 60.54 ? N5 O38 1795 A 1 HETATM 20 C C13 O38 . . . B 2 1.114 -15.039 -16.705 1 59.7 ? C13 O38 1795 A 1 HETATM 21 C C11 O38 . . . B 2 1.684 -15.236 -17.977 1 59.09 ? C11 O38 1795 A 1 HETATM 22 C C12 O38 . . . B 2 2.577 -16.287 -18.228 1 63.9 ? C12 O38 1795 A 1 HETATM 23 N N3 O38 . . . B 2 3.313 -17.149 -18.441 1 66.92 ? N3 O38 1795 A 1 HETATM 24 C C10 O38 . . . B 2 1.354 -14.365 -19.006 1 55.44 ? C10 O38 1795 A 1 HETATM 25 C C9 O38 . . . B 2 0.489 -13.332 -18.777 1 55.92 ? C9 O38 1795 A 1 HETATM 26 N N4 O38 . . . B 2 1.45 -15.894 -15.693 1 61.41 ? N4 O38 1795 A 1 HETATM 27 C C14 O38 . . . B 2 1.005 -15.731 -14.316 1 65.4 ? C14 O38 1795 A 1 HETATM 28 C C19 O38 . . . B 2 -0.255 -16.538 -14.075 1 68.71 ? C19 O38 1795 A 1 HETATM 29 C C18 O38 . . . B 2 -0.708 -16.436 -12.625 1 70.04 ? C18 O38 1795 A 1 HETATM 30 C C17 O38 . . . B 2 0.388 -16.861 -11.675 1 69.99 ? C17 O38 1795 A 1 HETATM 31 C C16 O38 . . . B 2 1.643 -16.051 -11.911 1 69.94 ? C16 O38 1795 A 1 HETATM 32 C C15 O38 . . . B 2 2.103 -16.152 -13.359 1 68.38 ? C15 O38 1795 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 32 #