data_5AP5 # _model_server_result.job_id ufjv19Rdf4Ef_PkBi0KZmQ _model_server_result.datetime_utc '2024-10-19 16:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ap5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1796}' # _entry.id 5AP5 # _exptl.entry_id 5AP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2-hydroxyethoxy)acetaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AP5 _cell.length_a 70.32 _cell.length_b 112.17 _cell.length_c 113.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 O3' _chem_comp.formula_weight 104.105 _chem_comp.id 1KA _chem_comp.mon_nstd_flag . _chem_comp.name (2-hydroxyethoxy)acetaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 1KA sing 1 n n C4 C3 1KA sing 2 n n C3 O2 1KA sing 3 n n C2 O2 1KA sing 4 n n C2 C1 1KA sing 5 n n C1 O1 1KA doub 6 n n C1 H1 1KA sing 7 n n C2 H2 1KA sing 8 n n C2 H3 1KA sing 9 n n C3 H4 1KA sing 10 n n C3 H5 1KA sing 11 n n C4 H6 1KA sing 12 n n C4 H7 1KA sing 13 n n O4 H8 1KA sing 14 n n # _atom_sites.entry_id 5AP5 _atom_sites.fract_transf_matrix[1][1] 0.014221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7RO A 1 1795 1795 7RO 7RO . C 3 1KA A 1 1796 1796 1KA 1KA . D 4 PGE A 1 1797 1797 PGE PGE . E 5 EDO A 1 1798 1798 EDO EDO . F 5 EDO A 1 1799 1799 EDO EDO . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 1KA . . . C 3 7.898 -22.405 -20.889 1 97.59 ? C1 1KA 1796 A 1 HETATM 2 O O1 1KA . . . C 3 6.878 -21.443 -20.644 1 98.1 ? O1 1KA 1796 A 1 HETATM 3 C C2 1KA . . . C 3 9.279 -21.79 -20.952 1 95.22 ? C2 1KA 1796 A 1 HETATM 4 O O2 1KA . . . C 3 9.647 -21.156 -19.723 1 93.68 ? O2 1KA 1796 A 1 HETATM 5 C C3 1KA . . . C 3 10.271 -22.018 -18.769 1 90.01 ? C3 1KA 1796 A 1 HETATM 6 C C4 1KA . . . C 3 10.516 -21.34 -17.447 1 87.1 ? C4 1KA 1796 A 1 HETATM 7 O O4 1KA . . . C 3 9.313 -21.103 -16.708 1 84.36 ? O4 1KA 1796 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #