data_5AP6
#
_model_server_result.job_id            yLuDFaHznFIHGIWmQKxLsA 
_model_server_result.datetime_utc      '2024-12-18 04:22:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ap6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1796}' 
#
_entry.id    5AP6 
#
_exptl.entry_id    5AP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AP6 
_cell.length_a            69.72 
_cell.length_b            104.37 
_cell.length_c            112.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     5AP6 
_atom_sites.fract_transf_matrix[1][1]    0.014343 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009581 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PWU A 1 1795 1795 PWU PWU . 
C 3 EDO A 1 1796 1796 EDO EDO . 
D 3 EDO A 1 1797 1797 EDO EDO . 
E 3 EDO A 1 1798 1798 EDO EDO . 
F 3 EDO A 1 1799 1799 EDO EDO . 
G 3 EDO A 1 1800 1800 EDO EDO . 
H 3 EDO A 1 1801 1801 EDO EDO . 
I 3 EDO A 1 1802 1802 EDO EDO . 
J 3 EDO A 1 1803 1803 EDO EDO . 
K 3 EDO A 1 1804 1804 EDO EDO . 
L 3 EDO A 1 1805 1805 EDO EDO . 
M 4 DMS A 1 1806 1806 DMS DMS . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
N 5 HOH A 7 2007 2007 HOH HOH . 
N 5 HOH A 8 2008 2008 HOH HOH . 
N 5 HOH A 9 2009 2009 HOH HOH . 
N 5 HOH A 10 2010 2010 HOH HOH . 
N 5 HOH A 11 2011 2011 HOH HOH . 
N 5 HOH A 12 2012 2012 HOH HOH . 
N 5 HOH A 13 2013 2013 HOH HOH . 
N 5 HOH A 14 2014 2014 HOH HOH . 
N 5 HOH A 15 2015 2015 HOH HOH . 
N 5 HOH A 16 2016 2016 HOH HOH . 
N 5 HOH A 17 2017 2017 HOH HOH . 
N 5 HOH A 18 2018 2018 HOH HOH . 
N 5 HOH A 19 2019 2019 HOH HOH . 
N 5 HOH A 20 2020 2020 HOH HOH . 
N 5 HOH A 21 2021 2021 HOH HOH . 
N 5 HOH A 22 2022 2022 HOH HOH . 
N 5 HOH A 23 2023 2023 HOH HOH . 
N 5 HOH A 24 2024 2024 HOH HOH . 
N 5 HOH A 25 2025 2025 HOH HOH . 
N 5 HOH A 26 2026 2026 HOH HOH . 
N 5 HOH A 27 2027 2027 HOH HOH . 
N 5 HOH A 28 2028 2028 HOH HOH . 
N 5 HOH A 29 2029 2029 HOH HOH . 
N 5 HOH A 30 2030 2030 HOH HOH . 
N 5 HOH A 31 2031 2031 HOH HOH . 
N 5 HOH A 32 2032 2032 HOH HOH . 
N 5 HOH A 33 2033 2033 HOH HOH . 
N 5 HOH A 34 2034 2034 HOH HOH . 
N 5 HOH A 35 2035 2035 HOH HOH . 
N 5 HOH A 36 2036 2036 HOH HOH . 
N 5 HOH A 37 2037 2037 HOH HOH . 
N 5 HOH A 38 2038 2038 HOH HOH . 
N 5 HOH A 39 2039 2039 HOH HOH . 
N 5 HOH A 40 2040 2040 HOH HOH . 
N 5 HOH A 41 2041 2041 HOH HOH . 
N 5 HOH A 42 2042 2042 HOH HOH . 
N 5 HOH A 43 2043 2043 HOH HOH . 
N 5 HOH A 44 2044 2044 HOH HOH . 
N 5 HOH A 45 2045 2045 HOH HOH . 
N 5 HOH A 46 2046 2046 HOH HOH . 
N 5 HOH A 47 2047 2047 HOH HOH . 
N 5 HOH A 48 2048 2048 HOH HOH . 
N 5 HOH A 49 2049 2049 HOH HOH . 
N 5 HOH A 50 2050 2050 HOH HOH . 
N 5 HOH A 51 2051 2051 HOH HOH . 
N 5 HOH A 52 2052 2052 HOH HOH . 
N 5 HOH A 53 2053 2053 HOH HOH . 
N 5 HOH A 54 2054 2054 HOH HOH . 
N 5 HOH A 55 2055 2055 HOH HOH . 
N 5 HOH A 56 2056 2056 HOH HOH . 
N 5 HOH A 57 2057 2057 HOH HOH . 
N 5 HOH A 58 2058 2058 HOH HOH . 
N 5 HOH A 59 2059 2059 HOH HOH . 
N 5 HOH A 60 2060 2060 HOH HOH . 
N 5 HOH A 61 2061 2061 HOH HOH . 
N 5 HOH A 62 2062 2062 HOH HOH . 
N 5 HOH A 63 2063 2063 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -34.328 -29.015 -6.948 1 81.91 ? C1 EDO 1796 A 1 
HETATM 2 O O1 EDO . . . C 3 -33.672 -28.191 -7.912 1 80.55 ? O1 EDO 1796 A 1 
HETATM 3 C C2 EDO . . . C 3 -33.769 -30.465 -7.011 1 82.37 ? C2 EDO 1796 A 1 
HETATM 4 O O2 EDO . . . C 3 -34.849 -31.392 -7.053 1 83.53 ? O2 EDO 1796 A 1 
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_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           462 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
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