data_5APR # _model_server_result.job_id Qh7ASlIJ_lv6rfDPUWArTQ _model_server_result.datetime_utc '2024-10-16 10:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5apr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 5APR # _exptl.entry_id 5APR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5APR _cell.length_a 60.33 _cell.length_b 60.64 _cell.length_c 106.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5APR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 E CYS 48 1_555 A SG CYS 51 E CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 252 E CYS 252 1_555 A SG CYS 285 E CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 B C CYS 4 I CYS 5 1_555 B N STA 5 I STA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 B SG CYS 4 I CYS 5 1_555 B SG DHL 8 I DHL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale3 B C STA 5 I STA 6 1_555 B N LEU 6 I LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C PHE 7 I PHE 8 1_555 B N DHL 8 I DHL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? metalc ? metalc1 C CA CA . I CA 400 1_555 A O GLY 220 E GLY 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 C CA CA . I CA 400 1_555 B N CYS 4 I CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc3 C CA CA . I CA 400 1_555 B N STA 5 I STA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc4 C CA CA . I CA 400 1_555 D O HOH . E HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc5 C CA CA . I CA 400 1_555 D O HOH . E HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5APR _atom_sites.fract_transf_matrix[1][1] 0.016576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA I 1 400 400 CA CA . D 4 HOH E 1 501 501 HOH HOH . D 4 HOH E 2 502 502 HOH HOH . D 4 HOH E 3 503 503 HOH HOH . D 4 HOH E 4 504 504 HOH HOH . D 4 HOH E 5 505 505 HOH HOH . D 4 HOH E 6 506 506 HOH HOH . D 4 HOH E 7 507 507 HOH HOH . D 4 HOH E 8 508 508 HOH HOH . D 4 HOH E 9 509 509 HOH HOH . D 4 HOH E 10 510 510 HOH HOH . D 4 HOH E 11 511 511 HOH HOH . D 4 HOH E 12 512 512 HOH HOH . D 4 HOH E 13 513 513 HOH HOH . D 4 HOH E 14 514 514 HOH HOH . D 4 HOH E 15 515 515 HOH HOH . D 4 HOH E 16 516 516 HOH HOH . D 4 HOH E 17 517 517 HOH HOH . D 4 HOH E 18 518 518 HOH HOH . D 4 HOH E 19 519 519 HOH HOH . D 4 HOH E 20 520 520 HOH HOH . D 4 HOH E 21 521 521 HOH HOH . D 4 HOH E 22 522 522 HOH HOH . D 4 HOH E 23 523 523 HOH HOH . D 4 HOH E 24 524 524 HOH HOH . D 4 HOH E 25 525 525 HOH HOH . D 4 HOH E 26 526 526 HOH HOH . D 4 HOH E 27 527 527 HOH HOH . D 4 HOH E 28 528 528 HOH HOH . D 4 HOH E 29 529 529 HOH HOH . D 4 HOH E 30 530 530 HOH HOH . D 4 HOH E 31 531 531 HOH HOH . D 4 HOH E 32 532 532 HOH HOH . D 4 HOH E 33 534 534 HOH HOH . D 4 HOH E 34 535 535 HOH HOH . D 4 HOH E 35 536 536 HOH HOH . D 4 HOH E 36 537 537 HOH HOH . D 4 HOH E 37 538 538 HOH HOH . D 4 HOH E 38 539 539 HOH HOH . D 4 HOH E 39 540 540 HOH HOH . D 4 HOH E 40 541 541 HOH HOH . D 4 HOH E 41 542 542 HOH HOH . D 4 HOH E 42 543 543 HOH HOH . D 4 HOH E 43 544 544 HOH HOH . D 4 HOH E 44 545 545 HOH HOH . D 4 HOH E 45 546 546 HOH HOH . D 4 HOH E 46 547 547 HOH HOH . D 4 HOH E 47 548 548 HOH HOH . D 4 HOH E 48 550 550 HOH HOH . D 4 HOH E 49 551 551 HOH HOH . D 4 HOH E 50 552 552 HOH HOH . D 4 HOH E 51 553 553 HOH HOH . D 4 HOH E 52 554 554 HOH HOH . D 4 HOH E 53 555 555 HOH HOH . D 4 HOH E 54 556 556 HOH HOH . D 4 HOH E 55 557 557 HOH HOH . D 4 HOH E 56 558 558 HOH HOH . D 4 HOH E 57 559 559 HOH HOH . D 4 HOH E 58 560 560 HOH HOH . D 4 HOH E 59 561 561 HOH HOH . D 4 HOH E 60 562 562 HOH HOH . D 4 HOH E 61 563 563 HOH HOH . D 4 HOH E 62 564 564 HOH HOH . D 4 HOH E 63 565 565 HOH HOH . D 4 HOH E 64 566 566 HOH HOH . D 4 HOH E 65 569 569 HOH HOH . D 4 HOH E 66 570 570 HOH HOH . D 4 HOH E 67 571 571 HOH HOH . D 4 HOH E 68 572 572 HOH HOH . D 4 HOH E 69 573 573 HOH HOH . D 4 HOH E 70 574 574 HOH HOH . D 4 HOH E 71 575 575 HOH HOH . D 4 HOH E 72 576 576 HOH HOH . D 4 HOH E 73 578 578 HOH HOH . D 4 HOH E 74 579 579 HOH HOH . D 4 HOH E 75 580 580 HOH HOH . D 4 HOH E 76 581 581 HOH HOH . D 4 HOH E 77 582 582 HOH HOH . D 4 HOH E 78 584 584 HOH HOH . D 4 HOH E 79 585 585 HOH HOH . D 4 HOH E 80 586 586 HOH HOH . D 4 HOH E 81 587 587 HOH HOH . D 4 HOH E 82 588 588 HOH HOH . D 4 HOH E 83 589 589 HOH HOH . D 4 HOH E 84 590 590 HOH HOH . D 4 HOH E 85 591 591 HOH HOH . D 4 HOH E 86 592 592 HOH HOH . D 4 HOH E 87 593 593 HOH HOH . D 4 HOH E 88 594 594 HOH HOH . D 4 HOH E 89 595 595 HOH HOH . D 4 HOH E 90 597 597 HOH HOH . D 4 HOH E 91 598 598 HOH HOH . D 4 HOH E 92 599 599 HOH HOH . D 4 HOH E 93 600 600 HOH HOH . D 4 HOH E 94 601 601 HOH HOH . D 4 HOH E 95 602 602 HOH HOH . D 4 HOH E 96 603 603 HOH HOH . D 4 HOH E 97 604 604 HOH HOH . D 4 HOH E 98 605 605 HOH HOH . D 4 HOH E 99 606 606 HOH HOH . D 4 HOH E 100 607 607 HOH HOH . D 4 HOH E 101 608 608 HOH HOH . D 4 HOH E 102 610 610 HOH HOH . D 4 HOH E 103 611 611 HOH HOH . D 4 HOH E 104 612 612 HOH HOH . D 4 HOH E 105 613 613 HOH HOH . D 4 HOH E 106 614 614 HOH HOH . D 4 HOH E 107 615 615 HOH HOH . D 4 HOH E 108 616 616 HOH HOH . D 4 HOH E 109 617 617 HOH HOH . D 4 HOH E 110 618 618 HOH HOH . D 4 HOH E 111 619 619 HOH HOH . D 4 HOH E 112 620 620 HOH HOH . D 4 HOH E 113 621 621 HOH HOH . D 4 HOH E 114 622 622 HOH HOH . D 4 HOH E 115 623 623 HOH HOH . D 4 HOH E 116 624 624 HOH HOH . D 4 HOH E 117 626 626 HOH HOH . D 4 HOH E 118 627 627 HOH HOH . D 4 HOH E 119 628 628 HOH HOH . D 4 HOH E 120 629 629 HOH HOH . D 4 HOH E 121 630 630 HOH HOH . D 4 HOH E 122 631 631 HOH HOH . D 4 HOH E 123 632 632 HOH HOH . D 4 HOH E 124 633 633 HOH HOH . D 4 HOH E 125 634 634 HOH HOH . D 4 HOH E 126 635 635 HOH HOH . D 4 HOH E 127 636 636 HOH HOH . D 4 HOH E 128 638 638 HOH HOH . D 4 HOH E 129 639 639 HOH HOH . D 4 HOH E 130 640 640 HOH HOH . D 4 HOH E 131 641 641 HOH HOH . D 4 HOH E 132 642 642 HOH HOH . D 4 HOH E 133 643 643 HOH HOH . D 4 HOH E 134 644 644 HOH HOH . D 4 HOH E 135 645 645 HOH HOH . D 4 HOH E 136 646 646 HOH HOH . D 4 HOH E 137 647 647 HOH HOH . D 4 HOH E 138 648 648 HOH HOH . D 4 HOH E 139 650 650 HOH HOH . D 4 HOH E 140 653 653 HOH HOH . D 4 HOH E 141 654 654 HOH HOH . D 4 HOH E 142 655 655 HOH HOH . D 4 HOH E 143 656 656 HOH HOH . D 4 HOH E 144 657 657 HOH HOH . D 4 HOH E 145 658 658 HOH HOH . D 4 HOH E 146 659 659 HOH HOH . D 4 HOH E 147 660 660 HOH HOH . D 4 HOH E 148 661 661 HOH HOH . D 4 HOH E 149 662 662 HOH HOH . D 4 HOH E 150 664 664 HOH HOH . D 4 HOH E 151 668 668 HOH HOH . D 4 HOH E 152 669 669 HOH HOH . D 4 HOH E 153 670 670 HOH HOH . D 4 HOH E 154 673 673 HOH HOH . D 4 HOH E 155 674 674 HOH HOH . D 4 HOH E 156 675 675 HOH HOH . D 4 HOH E 157 676 676 HOH HOH . D 4 HOH E 158 677 677 HOH HOH . D 4 HOH E 159 680 680 HOH HOH . D 4 HOH E 160 681 681 HOH HOH . D 4 HOH E 161 683 683 HOH HOH . D 4 HOH E 162 684 684 HOH HOH . D 4 HOH E 163 685 685 HOH HOH . D 4 HOH E 164 687 687 HOH HOH . D 4 HOH E 165 688 688 HOH HOH . D 4 HOH E 166 689 689 HOH HOH . D 4 HOH E 167 690 690 HOH HOH . D 4 HOH E 168 691 691 HOH HOH . D 4 HOH E 169 692 692 HOH HOH . D 4 HOH E 170 693 693 HOH HOH . D 4 HOH E 171 695 695 HOH HOH . D 4 HOH E 172 696 696 HOH HOH . D 4 HOH E 173 697 697 HOH HOH . D 4 HOH E 174 698 698 HOH HOH . D 4 HOH E 175 699 699 HOH HOH . D 4 HOH E 176 700 700 HOH HOH . D 4 HOH E 177 701 701 HOH HOH . D 4 HOH E 178 704 704 HOH HOH . D 4 HOH E 179 706 706 HOH HOH . D 4 HOH E 180 707 707 HOH HOH . D 4 HOH E 181 709 709 HOH HOH . D 4 HOH E 182 710 710 HOH HOH . D 4 HOH E 183 712 712 HOH HOH . D 4 HOH E 184 713 713 HOH HOH . D 4 HOH E 185 714 714 HOH HOH . D 4 HOH E 186 715 715 HOH HOH . D 4 HOH E 187 716 716 HOH HOH . D 4 HOH E 188 718 718 HOH HOH . D 4 HOH E 189 719 719 HOH HOH . D 4 HOH E 190 720 720 HOH HOH . D 4 HOH E 191 722 722 HOH HOH . D 4 HOH E 192 724 724 HOH HOH . D 4 HOH E 193 725 725 HOH HOH . D 4 HOH E 194 726 726 HOH HOH . D 4 HOH E 195 727 727 HOH HOH . D 4 HOH E 196 728 728 HOH HOH . D 4 HOH E 197 732 732 HOH HOH . D 4 HOH E 198 733 733 HOH HOH . D 4 HOH E 199 734 734 HOH HOH . D 4 HOH E 200 735 735 HOH HOH . D 4 HOH E 201 736 736 HOH HOH . D 4 HOH E 202 737 737 HOH HOH . D 4 HOH E 203 739 739 HOH HOH . D 4 HOH E 204 740 740 HOH HOH . D 4 HOH E 205 741 741 HOH HOH . D 4 HOH E 206 744 744 HOH HOH . D 4 HOH E 207 745 745 HOH HOH . D 4 HOH E 208 746 746 HOH HOH . D 4 HOH E 209 747 747 HOH HOH . D 4 HOH E 210 748 748 HOH HOH . D 4 HOH E 211 749 749 HOH HOH . D 4 HOH E 212 750 750 HOH HOH . D 4 HOH E 213 751 751 HOH HOH . D 4 HOH E 214 752 752 HOH HOH . D 4 HOH E 215 753 753 HOH HOH . D 4 HOH E 216 756 756 HOH HOH . D 4 HOH E 217 757 757 HOH HOH . D 4 HOH E 218 758 758 HOH HOH . D 4 HOH E 219 759 759 HOH HOH . D 4 HOH E 220 761 761 HOH HOH . D 4 HOH E 221 763 763 HOH HOH . D 4 HOH E 222 764 764 HOH HOH . D 4 HOH E 223 766 766 HOH HOH . D 4 HOH E 224 768 768 HOH HOH . D 4 HOH E 225 769 769 HOH HOH . D 4 HOH E 226 770 770 HOH HOH . D 4 HOH E 227 771 771 HOH HOH . D 4 HOH E 228 772 772 HOH HOH . D 4 HOH E 229 774 774 HOH HOH . D 4 HOH E 230 775 775 HOH HOH . D 4 HOH E 231 776 776 HOH HOH . D 4 HOH E 232 777 777 HOH HOH . D 4 HOH E 233 778 778 HOH HOH . D 4 HOH E 234 779 779 HOH HOH . D 4 HOH E 235 780 780 HOH HOH . D 4 HOH E 236 781 781 HOH HOH . D 4 HOH E 237 783 783 HOH HOH . D 4 HOH E 238 784 784 HOH HOH . D 4 HOH E 239 785 785 HOH HOH . D 4 HOH E 240 786 786 HOH HOH . D 4 HOH E 241 787 787 HOH HOH . D 4 HOH E 242 790 790 HOH HOH . D 4 HOH E 243 791 791 HOH HOH . D 4 HOH E 244 792 792 HOH HOH . D 4 HOH E 245 794 794 HOH HOH . D 4 HOH E 246 798 798 HOH HOH . D 4 HOH E 247 799 799 HOH HOH . D 4 HOH E 248 800 800 HOH HOH . D 4 HOH E 249 801 801 HOH HOH . D 4 HOH E 250 802 802 HOH HOH . D 4 HOH E 251 803 803 HOH HOH . D 4 HOH E 252 804 804 HOH HOH . D 4 HOH E 253 806 806 HOH HOH . D 4 HOH E 254 807 807 HOH HOH . D 4 HOH E 255 809 809 HOH HOH . D 4 HOH E 256 811 811 HOH HOH . D 4 HOH E 257 813 813 HOH HOH . D 4 HOH E 258 816 816 HOH HOH . D 4 HOH E 259 818 818 HOH HOH . D 4 HOH E 260 819 819 HOH HOH . D 4 HOH E 261 820 820 HOH HOH . D 4 HOH E 262 821 821 HOH HOH . D 4 HOH E 263 822 822 HOH HOH . D 4 HOH E 264 824 824 HOH HOH . D 4 HOH E 265 826 826 HOH HOH . D 4 HOH E 266 830 830 HOH HOH . D 4 HOH E 267 831 831 HOH HOH . D 4 HOH E 268 832 832 HOH HOH . D 4 HOH E 269 833 833 HOH HOH . D 4 HOH E 270 837 837 HOH HOH . D 4 HOH E 271 839 839 HOH HOH . D 4 HOH E 272 840 840 HOH HOH . D 4 HOH E 273 841 841 HOH HOH . D 4 HOH E 274 842 842 HOH HOH . D 4 HOH E 275 843 843 HOH HOH . D 4 HOH E 276 844 844 HOH HOH . D 4 HOH E 277 851 851 HOH HOH . D 4 HOH E 278 853 853 HOH HOH . D 4 HOH E 279 854 854 HOH HOH . D 4 HOH E 280 857 857 HOH HOH . D 4 HOH E 281 859 859 HOH HOH . D 4 HOH E 282 860 860 HOH HOH . D 4 HOH E 283 864 864 HOH HOH . D 4 HOH E 284 868 868 HOH HOH . D 4 HOH E 285 873 873 HOH HOH . E 4 HOH I 1 671 671 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 40.772 _atom_site.Cartn_y 65.041 _atom_site.Cartn_z 104.091 _atom_site.occupancy 0.52 _atom_site.B_iso_or_equiv 24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #