data_5AQX # _model_server_result.job_id h9GqnTxhrqfTV_faMyYrBg _model_server_result.datetime_utc '2024-11-22 06:51:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1390}' # _entry.id 5AQX # _exptl.entry_id 5AQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,3R,5R)-3-((5-(benzyloxy)quinazolin-4-yl)amino)-5-(hydroxymethyl)cyclopentane-1,2-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AQX _cell.length_a 51.845 _cell.length_b 82.021 _cell.length_c 94.421 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 N3 O4' _chem_comp.formula_weight 381.425 _chem_comp.id KC7 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,3R,5R)-3-((5-(benzyloxy)quinazolin-4-yl)amino)-5-(hydroxymethyl)cyclopentane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 KC7 sing 182 n n C1 C2 KC7 sing 183 n n C1 C KC7 sing 184 n n C2 O1 KC7 sing 185 n n C2 C3 KC7 sing 186 n n C3 C5 KC7 sing 187 n n C3 C4 KC7 sing 188 n n C5 O KC7 sing 189 n n C4 C KC7 sing 190 n n C N KC7 sing 191 n n N C6 KC7 sing 192 n n C6 N2 KC7 sing 193 n y C6 C7 KC7 doub 194 n y N2 C13 KC7 doub 195 n y C13 N1 KC7 sing 196 n y N1 C12 KC7 doub 197 n y C12 C7 KC7 sing 198 n y C12 C11 KC7 sing 199 n y C7 C8 KC7 sing 200 n y C11 C10 KC7 doub 201 n y C10 C9 KC7 sing 202 n y C9 C8 KC7 doub 203 n y C8 O3 KC7 sing 204 n n O3 C14 KC7 sing 205 n n C14 C15 KC7 sing 206 n n C15 C20 KC7 sing 207 n y C15 C16 KC7 doub 208 n y C20 C19 KC7 doub 209 n y C19 C18 KC7 sing 210 n y C18 C17 KC7 doub 211 n y C17 C16 KC7 sing 212 n y O2 H2 KC7 sing 213 n n C1 H1 KC7 sing 214 n n C2 HA KC7 sing 215 n n C H KC7 sing 216 n n O1 HB KC7 sing 217 n n C3 H3 KC7 sing 218 n n C5 H51C KC7 sing 219 n n C5 H52C KC7 sing 220 n n C4 H41C KC7 sing 221 n n C4 H42C KC7 sing 222 n n O HC KC7 sing 223 n n N HD KC7 sing 224 n n C13 H13 KC7 sing 225 n n C11 H11 KC7 sing 226 n n C10 H10 KC7 sing 227 n n C9 H9 KC7 sing 228 n n C14 H141 KC7 sing 229 n n C14 H142 KC7 sing 230 n n C20 H20 KC7 sing 231 n n C16 H16 KC7 sing 232 n n C19 H19 KC7 sing 233 n n C18 H18 KC7 sing 234 n n C17 H17 KC7 sing 235 n n # _atom_sites.entry_id 5AQX _atom_sites.fract_transf_matrix[1][1] 0.019288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KC7 A 1 1390 1390 KC7 KC7 . C 3 DMS A 1 1391 1391 DMS DMS . D 3 DMS A 1 1392 1392 DMS DMS . E 4 CL A 1 1393 1393 CL CL . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . F 5 HOH A 92 2092 2092 HOH HOH . F 5 HOH A 93 2093 2093 HOH HOH . F 5 HOH A 94 2094 2094 HOH HOH . F 5 HOH A 95 2095 2095 HOH HOH . F 5 HOH A 96 2096 2096 HOH HOH . F 5 HOH A 97 2097 2097 HOH HOH . F 5 HOH A 98 2098 2098 HOH HOH . F 5 HOH A 99 2099 2099 HOH HOH . F 5 HOH A 100 2100 2100 HOH HOH . F 5 HOH A 101 2101 2101 HOH HOH . F 5 HOH A 102 2102 2102 HOH HOH . F 5 HOH A 103 2103 2103 HOH HOH . F 5 HOH A 104 2104 2104 HOH HOH . F 5 HOH A 105 2105 2105 HOH HOH . F 5 HOH A 106 2106 2106 HOH HOH . F 5 HOH A 107 2107 2107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 KC7 . . . B 2 -17.754 9.745 -8.972 1 20 ? O2 KC7 1390 A 1 HETATM 2 C C1 KC7 . . . B 2 -17.859 8.768 -7.947 1 23.54 ? C1 KC7 1390 A 1 HETATM 3 C C2 KC7 . . . B 2 -16.673 7.802 -7.916 1 29.4 ? C2 KC7 1390 A 1 HETATM 4 O O1 KC7 . . . B 2 -16.249 7.408 -9.215 1 30.41 ? O1 KC7 1390 A 1 HETATM 5 C C3 KC7 . . . B 2 -17.173 6.608 -7.087 1 30.32 ? C3 KC7 1390 A 1 HETATM 6 C C5 KC7 . . . B 2 -16.728 6.634 -5.642 1 34.55 ? C5 KC7 1390 A 1 HETATM 7 O O KC7 . . . B 2 -15.319 6.563 -5.535 1 39.87 ? O KC7 1390 A 1 HETATM 8 C C4 KC7 . . . B 2 -18.692 6.63 -7.27 1 26.53 ? C4 KC7 1390 A 1 HETATM 9 C C KC7 . . . B 2 -19.047 7.828 -8.152 1 25.13 ? C KC7 1390 A 1 HETATM 10 N N KC7 . . . B 2 -20.304 8.44 -7.779 1 23.66 ? N KC7 1390 A 1 HETATM 11 C C6 KC7 . . . B 2 -21.351 8.542 -8.635 1 23.28 ? C6 KC7 1390 A 1 HETATM 12 N N2 KC7 . . . B 2 -21.216 8.052 -9.881 1 22.17 ? N2 KC7 1390 A 1 HETATM 13 C C13 KC7 . . . B 2 -22.296 8.2 -10.7 1 24.21 ? C13 KC7 1390 A 1 HETATM 14 N N1 KC7 . . . B 2 -23.461 8.762 -10.431 1 26.92 ? N1 KC7 1390 A 1 HETATM 15 C C12 KC7 . . . B 2 -23.582 9.258 -9.149 1 30.8 ? C12 KC7 1390 A 1 HETATM 16 C C7 KC7 . . . B 2 -22.558 9.174 -8.195 1 28.03 ? C7 KC7 1390 A 1 HETATM 17 C C11 KC7 . . . B 2 -24.796 9.895 -8.823 1 32.4 ? C11 KC7 1390 A 1 HETATM 18 C C10 KC7 . . . B 2 -24.968 10.432 -7.593 1 33.12 ? C10 KC7 1390 A 1 HETATM 19 C C9 KC7 . . . B 2 -23.957 10.356 -6.621 1 32.55 ? C9 KC7 1390 A 1 HETATM 20 C C8 KC7 . . . B 2 -22.784 9.729 -6.925 1 29.97 ? C8 KC7 1390 A 1 HETATM 21 O O3 KC7 . . . B 2 -21.767 9.561 -6.02 1 28.49 ? O3 KC7 1390 A 1 HETATM 22 C C14 KC7 . . . B 2 -21.625 10.5 -4.98 1 32 ? C14 KC7 1390 A 1 HETATM 23 C C15 KC7 . . . B 2 -20.349 10.119 -4.286 1 34.7 ? C15 KC7 1390 A 1 HETATM 24 C C20 KC7 . . . B 2 -19.203 10.879 -4.451 1 33.79 ? C20 KC7 1390 A 1 HETATM 25 C C19 KC7 . . . B 2 -18.025 10.5 -3.823 1 33.76 ? C19 KC7 1390 A 1 HETATM 26 C C18 KC7 . . . B 2 -17.988 9.368 -3.031 1 35.32 ? C18 KC7 1390 A 1 HETATM 27 C C17 KC7 . . . B 2 -19.133 8.611 -2.862 1 34.78 ? C17 KC7 1390 A 1 HETATM 28 C C16 KC7 . . . B 2 -20.309 8.984 -3.484 1 35.49 ? C16 KC7 1390 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #