data_5AT1
#
_model_server_result.job_id            QyAxZBsFmEoqgbjncppq5A 
_model_server_result.datetime_utc      '2024-12-21 12:37:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5at1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":155}' 
#
_entry.id    5AT1 
#
_exptl.entry_id    5AT1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5AT1 
_cell.length_a            122 
_cell.length_b            122 
_cell.length_c            142 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61 105.655099 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E ZN ZN . B ZN 154 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc2 E ZN ZN . B ZN 154 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 E ZN ZN . B ZN 154 1_555 B SG CYS 109 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 E ZN ZN . B ZN 154 1_555 B SG CYS 114 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
covale ? covale1 D O ILE 12 D ILE 12 1_555 H N4 CTP . D CTP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc5 G ZN ZN . D ZN 154 1_555 D SG CYS 141 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 G ZN ZN . D ZN 154 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc7 G ZN ZN . D ZN 154 1_555 D SG CYS 109 D CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc8 G ZN ZN . D ZN 154 1_555 D SG CYS 114 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5AT1 
_atom_sites.fract_transf_matrix[1][1]    0.008197 
_atom_sites.fract_transf_matrix[1][2]    0.004732 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007042 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN B 1 154 109 ZN ZN . 
F 4 CTP B 1 155 154 CTP CTP . 
G 3 ZN D 1 154 109 ZN ZN . 
H 4 CTP D 1 155 154 CTP CTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . H 4 25.552 93.046 43.182 1 77.95 ? N1 CTP 155 D 1 
HETATM 2 C C2 CTP . . . H 4 24.686 91.969 43.191 1 79.48 ? C2 CTP 155 D 1 
HETATM 3 N N3 CTP . . . H 4 23.713 91.821 44.095 1 80.05 ? N3 CTP 155 D 1 
HETATM 4 C C4 CTP . . . H 4 23.525 92.721 45.078 1 78.26 ? C4 CTP 155 D 1 
HETATM 5 C C5 CTP . . . H 4 24.444 93.857 45.096 1 76.25 ? C5 CTP 155 D 1 
HETATM 6 C C6 CTP . . . H 4 25.445 94.049 44.201 1 76.12 ? C6 CTP 155 D 1 
HETATM 7 O O2 CTP . . . H 4 24.873 91.249 42.459 1 80.89 ? O2 CTP 155 D 1 
HETATM 8 N N4 CTP . . . H 4 22.557 92.479 45.885 1 75.85 ? N4 CTP 155 D 1 
HETATM 9 C C1' CTP . . . H 4 26.617 93.117 42.149 1 76.81 ? C1' CTP 155 D 1 
HETATM 10 C C2' CTP . . . H 4 26.788 94.043 40.943 1 79.05 ? C2' CTP 155 D 1 
HETATM 11 O O2' CTP . . . H 4 26.668 93.084 39.887 1 82.42 ? O2' CTP 155 D 1 
HETATM 12 C C3' CTP . . . H 4 28.289 94.354 41.184 1 79.02 ? C3' CTP 155 D 1 
HETATM 13 C C4' CTP . . . H 4 28.792 94.228 42.464 1 76.94 ? C4' CTP 155 D 1 
HETATM 14 O O4' CTP . . . H 4 27.825 93.151 42.98 1 75.91 ? O4' CTP 155 D 1 
HETATM 15 O O3' CTP . . . H 4 29.233 93.597 40.272 1 79.03 ? O3' CTP 155 D 1 
HETATM 16 C C5' CTP . . . H 4 28.488 95.461 43.387 1 78.64 ? C5' CTP 155 D 1 
HETATM 17 O O5' CTP . . . H 4 29.446 95.449 44.627 1 74.81 ? O5' CTP 155 D 1 
HETATM 18 P PA CTP . . . H 4 30.343 96.625 44.662 1 81.4 ? PA CTP 155 D 1 
HETATM 19 O O1A CTP . . . H 4 29.756 97.924 45.334 1 78.37 ? O1A CTP 155 D 1 
HETATM 20 O O2A CTP . . . H 4 31.701 96.141 45.096 1 87.16 ? O2A CTP 155 D 1 
HETATM 21 O O3A CTP . . . H 4 30.45 97.081 43.182 1 83.73 ? O3A CTP 155 D 1 
HETATM 22 P PB CTP . . . H 4 31.743 97.393 42.131 1 84.14 ? PB CTP 155 D 1 
HETATM 23 O O1B CTP . . . H 4 32.178 98.755 42.497 1 79.5 ? O1B CTP 155 D 1 
HETATM 24 O O2B CTP . . . H 4 31.142 97.089 40.683 1 80.64 ? O2B CTP 155 D 1 
HETATM 25 O O3B CTP . . . H 4 32.823 96.219 42.665 1 80.85 ? O3B CTP 155 D 1 
HETATM 26 P PG CTP . . . H 4 34.216 96.33 42.041 1 93.89 ? PG CTP 155 D 1 
HETATM 27 O O1G CTP . . . H 4 34.444 97.672 41.562 1 92.93 ? O1G CTP 155 D 1 
HETATM 28 O O2G CTP . . . H 4 34.02 95.397 40.825 1 94.11 ? O2G CTP 155 D 1 
HETATM 29 O O3G CTP . . . H 4 35.146 95.775 42.982 1 85.14 ? O3G CTP 155 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#