data_5AUK # _model_server_result.job_id qz3D836KsIyodiR2xUZofQ _model_server_result.datetime_utc '2025-03-04 22:10:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5auk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 5AUK # _exptl.entry_id 5AUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5AUK _cell.length_a 31.942 _cell.length_b 31.942 _cell.length_c 320.078 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 39 A CYS 39 1_555 B GA1 GAK . A GAK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A SG CYS 44 A CYS 44 1_555 B GA1 GAK . A GAK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 A SG CYS 47 A CYS 47 1_555 B GA2 GAK . A GAK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc4 A SG CYS 77 A CYS 77 1_555 B GA2 GAK . A GAK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 54 n y C1 C6 BEN sing 55 n y C1 C BEN sing 56 n n C2 C3 BEN sing 57 n y C2 H2 BEN sing 58 n n C3 C4 BEN doub 59 n y C3 H3 BEN sing 60 n n C4 C5 BEN sing 61 n y C4 H4 BEN sing 62 n n C5 C6 BEN doub 63 n y C5 H5 BEN sing 64 n n C6 H6 BEN sing 65 n n C N1 BEN doub 66 e n C N2 BEN sing 67 n n N1 HN1 BEN sing 68 n n N2 HN21 BEN sing 69 n n N2 HN22 BEN sing 70 n n # _atom_sites.entry_id 5AUK _atom_sites.fract_transf_matrix[1][1] 0.031307 _atom_sites.fract_transf_matrix[1][2] 0.018075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAK A 1 101 100 GAK 999 . C 3 SO4 A 1 102 1 SO4 SO4 . D 3 SO4 A 1 103 2 SO4 SO4 . E 4 BEN A 1 104 501 BEN BEN . F 4 BEN A 1 105 502 BEN BEN . G 4 BEN A 1 106 503 BEN BEN . H 4 BEN A 1 107 504 BEN BEN . I 4 BEN A 1 108 505 BEN BEN . J 4 BEN A 1 109 506 BEN BEN . K 5 HOH A 1 201 29 HOH HOH . K 5 HOH A 2 202 30 HOH HOH . K 5 HOH A 3 203 34 HOH HOH . K 5 HOH A 4 204 19 HOH HOH . K 5 HOH A 5 205 24 HOH HOH . K 5 HOH A 6 206 21 HOH HOH . K 5 HOH A 7 207 22 HOH HOH . K 5 HOH A 8 208 15 HOH HOH . K 5 HOH A 9 209 33 HOH HOH . K 5 HOH A 10 210 20 HOH HOH . K 5 HOH A 11 211 28 HOH HOH . K 5 HOH A 12 212 7 HOH HOH . K 5 HOH A 13 213 31 HOH HOH . K 5 HOH A 14 214 18 HOH HOH . K 5 HOH A 15 215 9 HOH HOH . K 5 HOH A 16 216 16 HOH HOH . K 5 HOH A 17 217 1 HOH HOH . K 5 HOH A 18 218 5 HOH HOH . K 5 HOH A 19 219 4 HOH HOH . K 5 HOH A 20 220 27 HOH HOH . K 5 HOH A 21 221 25 HOH HOH . K 5 HOH A 22 222 3 HOH HOH . K 5 HOH A 23 223 13 HOH HOH . K 5 HOH A 24 224 6 HOH HOH . K 5 HOH A 25 225 35 HOH HOH . K 5 HOH A 26 226 26 HOH HOH . K 5 HOH A 27 227 2 HOH HOH . K 5 HOH A 28 228 8 HOH HOH . K 5 HOH A 29 229 14 HOH HOH . K 5 HOH A 30 230 12 HOH HOH . K 5 HOH A 31 231 10 HOH HOH . K 5 HOH A 32 232 11 HOH HOH . K 5 HOH A 33 233 32 HOH HOH . K 5 HOH A 34 234 23 HOH HOH . K 5 HOH A 35 235 17 HOH HOH . K 5 HOH A 36 236 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . E 4 -13.895 8.438 -3.471 1 27.34 ? C1 BEN 104 A 1 HETATM 2 C C2 BEN . . . E 4 -12.532 8.446 -3.109 1 27.82 ? C2 BEN 104 A 1 HETATM 3 C C3 BEN . . . E 4 -11.94 9.677 -2.938 1 30.43 ? C3 BEN 104 A 1 HETATM 4 C C4 BEN . . . E 4 -12.645 10.847 -3.055 1 30.46 ? C4 BEN 104 A 1 HETATM 5 C C5 BEN . . . E 4 -14.009 10.84 -3.365 1 32.93 ? C5 BEN 104 A 1 HETATM 6 C C6 BEN . . . E 4 -14.611 9.61 -3.593 1 29.3 ? C6 BEN 104 A 1 HETATM 7 C C BEN . . . E 4 -14.578 7.105 -3.636 1 25.73 ? C BEN 104 A 1 HETATM 8 N N1 BEN . . . E 4 -15.687 7.048 -4.378 1 24.17 ? N1 BEN 104 A 1 HETATM 9 N N2 BEN . . . E 4 -14.169 6.023 -3.123 1 22.85 ? N2 BEN 104 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #