data_5AUO # _model_server_result.job_id QChz9hz7mnX6539UsyEzsA _model_server_result.datetime_utc '2024-11-27 20:59:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5auo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5AUO # _exptl.entry_id 5AUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AUO _cell.length_a 74.361 _cell.length_b 81.887 _cell.length_c 61.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -74.361 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 D NI NI . A NI 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A N MET 1 A MET 1 1_555 D NI NI . A NI 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A N HIS 2 A HIS 2 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 A ND1 HIS 2 A HIS 2 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 A SG CYS 73 A CYS 73 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 A SG CYS 76 A CYS 76 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 A NE2 HIS 98 A HIS 98 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc8 A SG CYS 110 A CYS 110 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 A SG CYS 113 A CYS 113 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 J O HOH . A HOH 316 3_445 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc11 J O HOH . A HOH 355 3_445 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc12 B OG SER 34 B SER 34 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc13 B O LYS 149 B LYS 149 1_555 H MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc14 F O3G ACP . B ACP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc15 F O2B ACP . B ACP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc16 G MG MG . B MG 302 1_555 K O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc17 G MG MG . B MG 302 1_555 K O HOH . B HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc18 G MG MG . B MG 302 1_555 K O HOH . B HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc19 H MG MG . B MG 303 1_555 K O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc20 H MG MG . B MG 303 1_555 K O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc21 H MG MG . B MG 303 1_555 K O HOH . B HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5AUO _atom_sites.fract_transf_matrix[1][1] 0.013448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 201 1 ZN ZN . D 4 NI A 1 202 1 NI NI . E 5 CL A 1 203 1 CL CL . F 6 ACP B 1 301 301 ACP ACP . G 7 MG B 1 302 1 MG MG . H 7 MG B 1 303 2 MG MG . I 8 GOL B 1 304 1 GOL GOL . J 9 HOH A 1 301 45 HOH HOH . J 9 HOH A 2 302 66 HOH HOH . J 9 HOH A 3 303 158 HOH HOH . J 9 HOH A 4 304 111 HOH HOH . J 9 HOH A 5 305 53 HOH HOH . J 9 HOH A 6 306 150 HOH HOH . J 9 HOH A 7 307 86 HOH HOH . J 9 HOH A 8 308 43 HOH HOH . J 9 HOH A 9 309 60 HOH HOH . J 9 HOH A 10 310 169 HOH HOH . J 9 HOH A 11 311 155 HOH HOH . J 9 HOH A 12 312 92 HOH HOH . J 9 HOH A 13 313 130 HOH HOH . J 9 HOH A 14 314 34 HOH HOH . J 9 HOH A 15 315 131 HOH HOH . J 9 HOH A 16 316 30 HOH HOH . J 9 HOH A 17 317 122 HOH HOH . J 9 HOH A 18 318 87 HOH HOH . J 9 HOH A 19 319 172 HOH HOH . J 9 HOH A 20 320 21 HOH HOH . J 9 HOH A 21 321 42 HOH HOH . J 9 HOH A 22 322 61 HOH HOH . J 9 HOH A 23 323 35 HOH HOH . J 9 HOH A 24 324 22 HOH HOH . J 9 HOH A 25 325 63 HOH HOH . J 9 HOH A 26 326 159 HOH HOH . J 9 HOH A 27 327 107 HOH HOH . J 9 HOH A 28 328 75 HOH HOH . J 9 HOH A 29 329 48 HOH HOH . J 9 HOH A 30 330 51 HOH HOH . J 9 HOH A 31 331 99 HOH HOH . J 9 HOH A 32 332 64 HOH HOH . J 9 HOH A 33 333 52 HOH HOH . J 9 HOH A 34 334 143 HOH HOH . J 9 HOH A 35 335 129 HOH HOH . J 9 HOH A 36 336 57 HOH HOH . J 9 HOH A 37 337 89 HOH HOH . J 9 HOH A 38 338 178 HOH HOH . J 9 HOH A 39 339 54 HOH HOH . J 9 HOH A 40 340 117 HOH HOH . J 9 HOH A 41 341 81 HOH HOH . J 9 HOH A 42 342 170 HOH HOH . J 9 HOH A 43 343 137 HOH HOH . J 9 HOH A 44 344 38 HOH HOH . J 9 HOH A 45 345 102 HOH HOH . J 9 HOH A 46 346 36 HOH HOH . J 9 HOH A 47 347 125 HOH HOH . J 9 HOH A 48 348 95 HOH HOH . J 9 HOH A 49 349 96 HOH HOH . J 9 HOH A 50 350 44 HOH HOH . J 9 HOH A 51 351 132 HOH HOH . J 9 HOH A 52 352 127 HOH HOH . J 9 HOH A 53 353 160 HOH HOH . J 9 HOH A 54 354 72 HOH HOH . J 9 HOH A 55 355 49 HOH HOH . J 9 HOH A 56 356 133 HOH HOH . J 9 HOH A 57 357 19 HOH HOH . J 9 HOH A 58 358 139 HOH HOH . J 9 HOH A 59 359 151 HOH HOH . J 9 HOH A 60 360 94 HOH HOH . J 9 HOH A 61 361 152 HOH HOH . J 9 HOH A 62 362 100 HOH HOH . J 9 HOH A 63 363 121 HOH HOH . J 9 HOH A 64 364 67 HOH HOH . J 9 HOH A 65 365 119 HOH HOH . J 9 HOH A 66 366 88 HOH HOH . J 9 HOH A 67 367 70 HOH HOH . J 9 HOH A 68 368 148 HOH HOH . J 9 HOH A 69 369 156 HOH HOH . J 9 HOH A 70 370 174 HOH HOH . J 9 HOH A 71 371 79 HOH HOH . J 9 HOH A 72 372 157 HOH HOH . J 9 HOH A 73 373 142 HOH HOH . J 9 HOH A 74 374 126 HOH HOH . J 9 HOH A 75 375 154 HOH HOH . J 9 HOH A 76 376 123 HOH HOH . J 9 HOH A 77 377 144 HOH HOH . K 9 HOH B 1 401 153 HOH HOH . K 9 HOH B 2 402 83 HOH HOH . K 9 HOH B 3 403 110 HOH HOH . K 9 HOH B 4 404 114 HOH HOH . K 9 HOH B 5 405 82 HOH HOH . K 9 HOH B 6 406 168 HOH HOH . K 9 HOH B 7 407 7 HOH HOH . K 9 HOH B 8 408 175 HOH HOH . K 9 HOH B 9 409 65 HOH HOH . K 9 HOH B 10 410 10 HOH HOH . K 9 HOH B 11 411 97 HOH HOH . K 9 HOH B 12 412 23 HOH HOH . K 9 HOH B 13 413 93 HOH HOH . K 9 HOH B 14 414 90 HOH HOH . K 9 HOH B 15 415 11 HOH HOH . K 9 HOH B 16 416 101 HOH HOH . K 9 HOH B 17 417 105 HOH HOH . K 9 HOH B 18 418 55 HOH HOH . K 9 HOH B 19 419 50 HOH HOH . K 9 HOH B 20 420 78 HOH HOH . K 9 HOH B 21 421 120 HOH HOH . K 9 HOH B 22 422 1 HOH HOH . K 9 HOH B 23 423 5 HOH HOH . K 9 HOH B 24 424 16 HOH HOH . K 9 HOH B 25 425 32 HOH HOH . K 9 HOH B 26 426 62 HOH HOH . K 9 HOH B 27 427 109 HOH HOH . K 9 HOH B 28 428 73 HOH HOH . K 9 HOH B 29 429 149 HOH HOH . K 9 HOH B 30 430 68 HOH HOH . K 9 HOH B 31 431 8 HOH HOH . K 9 HOH B 32 432 98 HOH HOH . K 9 HOH B 33 433 18 HOH HOH . K 9 HOH B 34 434 134 HOH HOH . K 9 HOH B 35 435 4 HOH HOH . K 9 HOH B 36 436 3 HOH HOH . K 9 HOH B 37 437 20 HOH HOH . K 9 HOH B 38 438 74 HOH HOH . K 9 HOH B 39 439 29 HOH HOH . K 9 HOH B 40 440 40 HOH HOH . K 9 HOH B 41 441 59 HOH HOH . K 9 HOH B 42 442 26 HOH HOH . K 9 HOH B 43 443 147 HOH HOH . K 9 HOH B 44 444 12 HOH HOH . K 9 HOH B 45 445 124 HOH HOH . K 9 HOH B 46 446 138 HOH HOH . K 9 HOH B 47 447 6 HOH HOH . K 9 HOH B 48 448 9 HOH HOH . K 9 HOH B 49 449 113 HOH HOH . K 9 HOH B 50 450 56 HOH HOH . K 9 HOH B 51 451 145 HOH HOH . K 9 HOH B 52 452 47 HOH HOH . K 9 HOH B 53 453 25 HOH HOH . K 9 HOH B 54 454 2 HOH HOH . K 9 HOH B 55 455 115 HOH HOH . K 9 HOH B 56 456 166 HOH HOH . K 9 HOH B 57 457 176 HOH HOH . K 9 HOH B 58 458 118 HOH HOH . K 9 HOH B 59 459 135 HOH HOH . K 9 HOH B 60 460 46 HOH HOH . K 9 HOH B 61 461 37 HOH HOH . K 9 HOH B 62 462 85 HOH HOH . K 9 HOH B 63 463 69 HOH HOH . K 9 HOH B 64 464 128 HOH HOH . K 9 HOH B 65 465 162 HOH HOH . K 9 HOH B 66 466 24 HOH HOH . K 9 HOH B 67 467 14 HOH HOH . K 9 HOH B 68 468 71 HOH HOH . K 9 HOH B 69 469 77 HOH HOH . K 9 HOH B 70 470 136 HOH HOH . K 9 HOH B 71 471 116 HOH HOH . K 9 HOH B 72 472 15 HOH HOH . K 9 HOH B 73 473 76 HOH HOH . K 9 HOH B 74 474 112 HOH HOH . K 9 HOH B 75 475 173 HOH HOH . K 9 HOH B 76 476 58 HOH HOH . K 9 HOH B 77 477 141 HOH HOH . K 9 HOH B 78 478 103 HOH HOH . K 9 HOH B 79 479 17 HOH HOH . K 9 HOH B 80 480 161 HOH HOH . K 9 HOH B 81 481 80 HOH HOH . K 9 HOH B 82 482 91 HOH HOH . K 9 HOH B 83 483 167 HOH HOH . K 9 HOH B 84 484 164 HOH HOH . K 9 HOH B 85 485 28 HOH HOH . K 9 HOH B 86 486 39 HOH HOH . K 9 HOH B 87 487 27 HOH HOH . K 9 HOH B 88 488 33 HOH HOH . K 9 HOH B 89 489 41 HOH HOH . K 9 HOH B 90 490 31 HOH HOH . K 9 HOH B 91 491 177 HOH HOH . K 9 HOH B 92 492 13 HOH HOH . K 9 HOH B 93 493 84 HOH HOH . K 9 HOH B 94 494 140 HOH HOH . K 9 HOH B 95 495 106 HOH HOH . K 9 HOH B 96 496 146 HOH HOH . K 9 HOH B 97 497 104 HOH HOH . K 9 HOH B 98 498 108 HOH HOH . K 9 HOH B 99 499 163 HOH HOH . K 9 HOH B 100 500 171 HOH HOH . K 9 HOH B 101 501 165 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -22.764 _atom_site.Cartn_y 21.781 _atom_site.Cartn_z -3.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #