data_5AUV # _model_server_result.job_id KpoM7EZYdN-M7YETRoU7Xg _model_server_result.datetime_utc '2024-11-04 20:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5auv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 5AUV # _exptl.entry_id 5AUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AUV _cell.length_a 46.884 _cell.length_b 62.227 _cell.length_c 88.446 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id AGI _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Apigenin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAE AGI doub 1 n y CAG CAP AGI sing 2 n y CAE CAM AGI sing 3 n y CAM OAB AGI sing 4 n n CAM CAF AGI doub 5 n y CAF CAH AGI sing 6 n y CAH CAP AGI doub 7 n y CAP CAQ AGI sing 8 n n CAQ OAL AGI sing 9 n n CAQ CAJ AGI doub 10 n n OAL CAS AGI sing 11 n n CAJ CAR AGI sing 12 n n CAR OAA AGI doub 13 n n CAR CAT AGI sing 14 n n CAT CAS AGI doub 15 n y CAT CAO AGI sing 16 n y CAS CAK AGI sing 17 n y CAK CAN AGI doub 18 n y CAN OAC AGI sing 19 n n CAN CAI AGI sing 20 n y CAI CAO AGI doub 21 n y CAO OAD AGI sing 22 n n CAG HAG AGI sing 23 n n CAE HAE AGI sing 24 n n OAB HOAB AGI sing 25 n n CAF HAF AGI sing 26 n n CAH HAH AGI sing 27 n n CAJ HAJ AGI sing 28 n n CAK HAK AGI sing 29 n n OAC HOAC AGI sing 30 n n CAI HAI AGI sing 31 n n OAD HOAD AGI sing 32 n n # _atom_sites.entry_id 5AUV _atom_sites.fract_transf_matrix[1][1] 0.021329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGI A 1 400 400 AGI DRG . C 3 CL A 1 401 401 CL CL . D 4 HOH A 1 501 199 HOH HOH . D 4 HOH A 2 502 146 HOH HOH . D 4 HOH A 3 503 145 HOH HOH . D 4 HOH A 4 504 177 HOH HOH . D 4 HOH A 5 505 198 HOH HOH . D 4 HOH A 6 506 252 HOH HOH . D 4 HOH A 7 507 82 HOH HOH . D 4 HOH A 8 508 181 HOH HOH . D 4 HOH A 9 509 123 HOH HOH . D 4 HOH A 10 510 142 HOH HOH . D 4 HOH A 11 511 187 HOH HOH . D 4 HOH A 12 512 38 HOH HOH . D 4 HOH A 13 513 91 HOH HOH . D 4 HOH A 14 514 137 HOH HOH . D 4 HOH A 15 515 157 HOH HOH . D 4 HOH A 16 516 153 HOH HOH . D 4 HOH A 17 517 148 HOH HOH . D 4 HOH A 18 518 71 HOH HOH . D 4 HOH A 19 519 99 HOH HOH . D 4 HOH A 20 520 242 HOH HOH . D 4 HOH A 21 521 232 HOH HOH . D 4 HOH A 22 522 42 HOH HOH . D 4 HOH A 23 523 27 HOH HOH . D 4 HOH A 24 524 122 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 192 HOH HOH . D 4 HOH A 27 527 149 HOH HOH . D 4 HOH A 28 528 235 HOH HOH . D 4 HOH A 29 529 227 HOH HOH . D 4 HOH A 30 530 150 HOH HOH . D 4 HOH A 31 531 121 HOH HOH . D 4 HOH A 32 532 163 HOH HOH . D 4 HOH A 33 533 253 HOH HOH . D 4 HOH A 34 534 59 HOH HOH . D 4 HOH A 35 535 79 HOH HOH . D 4 HOH A 36 536 39 HOH HOH . D 4 HOH A 37 537 56 HOH HOH . D 4 HOH A 38 538 30 HOH HOH . D 4 HOH A 39 539 195 HOH HOH . D 4 HOH A 40 540 36 HOH HOH . D 4 HOH A 41 541 9 HOH HOH . D 4 HOH A 42 542 87 HOH HOH . D 4 HOH A 43 543 16 HOH HOH . D 4 HOH A 44 544 161 HOH HOH . D 4 HOH A 45 545 106 HOH HOH . D 4 HOH A 46 546 81 HOH HOH . D 4 HOH A 47 547 251 HOH HOH . D 4 HOH A 48 548 203 HOH HOH . D 4 HOH A 49 549 68 HOH HOH . D 4 HOH A 50 550 14 HOH HOH . D 4 HOH A 51 551 97 HOH HOH . D 4 HOH A 52 552 96 HOH HOH . D 4 HOH A 53 553 249 HOH HOH . D 4 HOH A 54 554 53 HOH HOH . D 4 HOH A 55 555 13 HOH HOH . D 4 HOH A 56 556 50 HOH HOH . D 4 HOH A 57 557 24 HOH HOH . D 4 HOH A 58 558 156 HOH HOH . D 4 HOH A 59 559 108 HOH HOH . D 4 HOH A 60 560 259 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 75 HOH HOH . D 4 HOH A 63 563 94 HOH HOH . D 4 HOH A 64 564 93 HOH HOH . D 4 HOH A 65 565 46 HOH HOH . D 4 HOH A 66 566 128 HOH HOH . D 4 HOH A 67 567 25 HOH HOH . D 4 HOH A 68 568 239 HOH HOH . D 4 HOH A 69 569 250 HOH HOH . D 4 HOH A 70 570 160 HOH HOH . D 4 HOH A 71 571 127 HOH HOH . D 4 HOH A 72 572 26 HOH HOH . D 4 HOH A 73 573 8 HOH HOH . D 4 HOH A 74 574 6 HOH HOH . D 4 HOH A 75 575 134 HOH HOH . D 4 HOH A 76 576 10 HOH HOH . D 4 HOH A 77 577 74 HOH HOH . D 4 HOH A 78 578 155 HOH HOH . D 4 HOH A 79 579 47 HOH HOH . D 4 HOH A 80 580 66 HOH HOH . D 4 HOH A 81 581 69 HOH HOH . D 4 HOH A 82 582 208 HOH HOH . D 4 HOH A 83 583 185 HOH HOH . D 4 HOH A 84 584 184 HOH HOH . D 4 HOH A 85 585 202 HOH HOH . D 4 HOH A 86 586 105 HOH HOH . D 4 HOH A 87 587 152 HOH HOH . D 4 HOH A 88 588 229 HOH HOH . D 4 HOH A 89 589 33 HOH HOH . D 4 HOH A 90 590 37 HOH HOH . D 4 HOH A 91 591 95 HOH HOH . D 4 HOH A 92 592 88 HOH HOH . D 4 HOH A 93 593 132 HOH HOH . D 4 HOH A 94 594 20 HOH HOH . D 4 HOH A 95 595 23 HOH HOH . D 4 HOH A 96 596 31 HOH HOH . D 4 HOH A 97 597 77 HOH HOH . D 4 HOH A 98 598 210 HOH HOH . D 4 HOH A 99 599 18 HOH HOH . D 4 HOH A 100 600 212 HOH HOH . D 4 HOH A 101 601 2 HOH HOH . D 4 HOH A 102 602 32 HOH HOH . D 4 HOH A 103 603 4 HOH HOH . D 4 HOH A 104 604 112 HOH HOH . D 4 HOH A 105 605 3 HOH HOH . D 4 HOH A 106 606 19 HOH HOH . D 4 HOH A 107 607 189 HOH HOH . D 4 HOH A 108 608 73 HOH HOH . D 4 HOH A 109 609 186 HOH HOH . D 4 HOH A 110 610 111 HOH HOH . D 4 HOH A 111 611 120 HOH HOH . D 4 HOH A 112 612 29 HOH HOH . D 4 HOH A 113 613 34 HOH HOH . D 4 HOH A 114 614 107 HOH HOH . D 4 HOH A 115 615 104 HOH HOH . D 4 HOH A 116 616 45 HOH HOH . D 4 HOH A 117 617 57 HOH HOH . D 4 HOH A 118 618 100 HOH HOH . D 4 HOH A 119 619 171 HOH HOH . D 4 HOH A 120 620 44 HOH HOH . D 4 HOH A 121 621 143 HOH HOH . D 4 HOH A 122 622 205 HOH HOH . D 4 HOH A 123 623 65 HOH HOH . D 4 HOH A 124 624 98 HOH HOH . D 4 HOH A 125 625 103 HOH HOH . D 4 HOH A 126 626 194 HOH HOH . D 4 HOH A 127 627 182 HOH HOH . D 4 HOH A 128 628 162 HOH HOH . D 4 HOH A 129 629 129 HOH HOH . D 4 HOH A 130 630 43 HOH HOH . D 4 HOH A 131 631 1 HOH HOH . D 4 HOH A 132 632 61 HOH HOH . D 4 HOH A 133 633 85 HOH HOH . D 4 HOH A 134 634 217 HOH HOH . D 4 HOH A 135 635 135 HOH HOH . D 4 HOH A 136 636 126 HOH HOH . D 4 HOH A 137 637 5 HOH HOH . D 4 HOH A 138 638 54 HOH HOH . D 4 HOH A 139 639 218 HOH HOH . D 4 HOH A 140 640 84 HOH HOH . D 4 HOH A 141 641 222 HOH HOH . D 4 HOH A 142 642 89 HOH HOH . D 4 HOH A 143 643 102 HOH HOH . D 4 HOH A 144 644 22 HOH HOH . D 4 HOH A 145 645 124 HOH HOH . D 4 HOH A 146 646 117 HOH HOH . D 4 HOH A 147 647 169 HOH HOH . D 4 HOH A 148 648 49 HOH HOH . D 4 HOH A 149 649 114 HOH HOH . D 4 HOH A 150 650 70 HOH HOH . D 4 HOH A 151 651 226 HOH HOH . D 4 HOH A 152 652 118 HOH HOH . D 4 HOH A 153 653 35 HOH HOH . D 4 HOH A 154 654 131 HOH HOH . D 4 HOH A 155 655 246 HOH HOH . D 4 HOH A 156 656 51 HOH HOH . D 4 HOH A 157 657 58 HOH HOH . D 4 HOH A 158 658 76 HOH HOH . D 4 HOH A 159 659 52 HOH HOH . D 4 HOH A 160 660 7 HOH HOH . D 4 HOH A 161 661 60 HOH HOH . D 4 HOH A 162 662 228 HOH HOH . D 4 HOH A 163 663 15 HOH HOH . D 4 HOH A 164 664 86 HOH HOH . D 4 HOH A 165 665 190 HOH HOH . D 4 HOH A 166 666 64 HOH HOH . D 4 HOH A 167 667 83 HOH HOH . D 4 HOH A 168 668 154 HOH HOH . D 4 HOH A 169 669 241 HOH HOH . D 4 HOH A 170 670 40 HOH HOH . D 4 HOH A 171 671 191 HOH HOH . D 4 HOH A 172 672 167 HOH HOH . D 4 HOH A 173 673 219 HOH HOH . D 4 HOH A 174 674 230 HOH HOH . D 4 HOH A 175 675 48 HOH HOH . D 4 HOH A 176 676 78 HOH HOH . D 4 HOH A 177 677 90 HOH HOH . D 4 HOH A 178 678 207 HOH HOH . D 4 HOH A 179 679 180 HOH HOH . D 4 HOH A 180 680 41 HOH HOH . D 4 HOH A 181 681 244 HOH HOH . D 4 HOH A 182 682 136 HOH HOH . D 4 HOH A 183 683 188 HOH HOH . D 4 HOH A 184 684 204 HOH HOH . D 4 HOH A 185 685 21 HOH HOH . D 4 HOH A 186 686 55 HOH HOH . D 4 HOH A 187 687 151 HOH HOH . D 4 HOH A 188 688 220 HOH HOH . D 4 HOH A 189 689 216 HOH HOH . D 4 HOH A 190 690 125 HOH HOH . D 4 HOH A 191 691 164 HOH HOH . D 4 HOH A 192 692 196 HOH HOH . D 4 HOH A 193 693 200 HOH HOH . D 4 HOH A 194 694 80 HOH HOH . D 4 HOH A 195 695 260 HOH HOH . D 4 HOH A 196 696 172 HOH HOH . D 4 HOH A 197 697 63 HOH HOH . D 4 HOH A 198 698 116 HOH HOH . D 4 HOH A 199 699 215 HOH HOH . D 4 HOH A 200 700 206 HOH HOH . D 4 HOH A 201 701 165 HOH HOH . D 4 HOH A 202 702 214 HOH HOH . D 4 HOH A 203 703 231 HOH HOH . D 4 HOH A 204 704 119 HOH HOH . D 4 HOH A 205 705 28 HOH HOH . D 4 HOH A 206 706 138 HOH HOH . D 4 HOH A 207 707 238 HOH HOH . D 4 HOH A 208 708 201 HOH HOH . D 4 HOH A 209 709 257 HOH HOH . D 4 HOH A 210 710 176 HOH HOH . D 4 HOH A 211 711 101 HOH HOH . D 4 HOH A 212 712 236 HOH HOH . D 4 HOH A 213 713 213 HOH HOH . D 4 HOH A 214 714 110 HOH HOH . D 4 HOH A 215 715 197 HOH HOH . D 4 HOH A 216 716 173 HOH HOH . D 4 HOH A 217 717 67 HOH HOH . D 4 HOH A 218 718 147 HOH HOH . D 4 HOH A 219 719 193 HOH HOH . D 4 HOH A 220 720 245 HOH HOH . D 4 HOH A 221 721 179 HOH HOH . D 4 HOH A 222 722 255 HOH HOH . D 4 HOH A 223 723 183 HOH HOH . D 4 HOH A 224 724 11 HOH HOH . D 4 HOH A 225 725 209 HOH HOH . D 4 HOH A 226 726 233 HOH HOH . D 4 HOH A 227 727 224 HOH HOH . D 4 HOH A 228 728 130 HOH HOH . D 4 HOH A 229 729 254 HOH HOH . D 4 HOH A 230 730 115 HOH HOH . D 4 HOH A 231 731 223 HOH HOH . D 4 HOH A 232 732 141 HOH HOH . D 4 HOH A 233 733 211 HOH HOH . D 4 HOH A 234 734 109 HOH HOH . D 4 HOH A 235 735 175 HOH HOH . D 4 HOH A 236 736 178 HOH HOH . D 4 HOH A 237 737 221 HOH HOH . D 4 HOH A 238 738 92 HOH HOH . D 4 HOH A 239 739 237 HOH HOH . D 4 HOH A 240 740 140 HOH HOH . D 4 HOH A 241 741 158 HOH HOH . D 4 HOH A 242 742 166 HOH HOH . D 4 HOH A 243 743 240 HOH HOH . D 4 HOH A 244 744 247 HOH HOH . D 4 HOH A 245 745 234 HOH HOH . D 4 HOH A 246 746 144 HOH HOH . D 4 HOH A 247 747 174 HOH HOH . D 4 HOH A 248 748 248 HOH HOH . D 4 HOH A 249 749 72 HOH HOH . D 4 HOH A 250 750 168 HOH HOH . D 4 HOH A 251 751 256 HOH HOH . D 4 HOH A 252 752 133 HOH HOH . D 4 HOH A 253 753 17 HOH HOH . D 4 HOH A 254 754 139 HOH HOH . D 4 HOH A 255 755 113 HOH HOH . D 4 HOH A 256 756 159 HOH HOH . D 4 HOH A 257 757 225 HOH HOH . D 4 HOH A 258 758 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG AGI . . . B 2 -25.498 3.959 -11.707 1 25.9 ? CAG AGI 400 A 1 HETATM 2 C CAE AGI . . . B 2 -26.243 4.956 -11.101 1 26.13 ? CAE AGI 400 A 1 HETATM 3 C CAM AGI . . . B 2 -25.884 5.445 -9.857 1 26.9 ? CAM AGI 400 A 1 HETATM 4 O OAB AGI . . . B 2 -26.651 6.42 -9.297 1 28.4 ? OAB AGI 400 A 1 HETATM 5 C CAF AGI . . . B 2 -24.757 4.941 -9.204 1 24.62 ? CAF AGI 400 A 1 HETATM 6 C CAH AGI . . . B 2 -24.004 3.943 -9.817 1 24.44 ? CAH AGI 400 A 1 HETATM 7 C CAP AGI . . . B 2 -24.368 3.463 -11.077 1 25.52 ? CAP AGI 400 A 1 HETATM 8 C CAQ AGI . . . B 2 -23.628 2.443 -11.667 1 25.93 ? CAQ AGI 400 A 1 HETATM 9 O OAL AGI . . . B 2 -22.511 2.097 -10.97 1 31.85 ? OAL AGI 400 A 1 HETATM 10 C CAJ AGI . . . B 2 -24.036 1.785 -12.82 1 31.82 ? CAJ AGI 400 A 1 HETATM 11 C CAR AGI . . . B 2 -23.249 0.74 -13.297 1 35.4 ? CAR AGI 400 A 1 HETATM 12 O OAA AGI . . . B 2 -23.576 0.132 -14.321 1 37.77 ? OAA AGI 400 A 1 HETATM 13 C CAT AGI . . . B 2 -22.132 0.359 -12.559 1 34.76 ? CAT AGI 400 A 1 HETATM 14 C CAS AGI . . . B 2 -21.771 1.03 -11.394 1 31.35 ? CAS AGI 400 A 1 HETATM 15 C CAK AGI . . . B 2 -20.668 0.616 -10.656 1 31.77 ? CAK AGI 400 A 1 HETATM 16 C CAN AGI . . . B 2 -19.916 -0.478 -11.066 1 32.77 ? CAN AGI 400 A 1 HETATM 17 O OAC AGI . . . B 2 -18.842 -0.865 -10.327 1 36.39 ? OAC AGI 400 A 1 HETATM 18 C CAI AGI . . . B 2 -20.268 -1.165 -12.22 1 34.78 ? CAI AGI 400 A 1 HETATM 19 C CAO AGI . . . B 2 -21.376 -0.743 -12.946 1 36.59 ? CAO AGI 400 A 1 HETATM 20 O OAD AGI . . . B 2 -21.767 -1.372 -14.082 1 41.46 ? OAD AGI 400 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #