data_5AUX # _model_server_result.job_id qs5Rl9Z4EncXUhgdN3GXIw _model_server_result.datetime_utc '2024-11-16 06:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 5AUX # _exptl.entry_id 5AUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AUX _cell.length_a 46.823 _cell.length_b 62.193 _cell.length_c 88.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O6' _chem_comp.formula_weight 286.236 _chem_comp.id KMP _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAEMPHEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KMP doub 173 n y C1 C6 KMP sing 174 n y C1 H1 KMP sing 175 n n C2 C3 KMP sing 176 n y C2 O30 KMP sing 177 n n C3 C4 KMP doub 178 n y C3 C9 KMP sing 179 n y C4 C5 KMP sing 180 n y C4 O12 KMP sing 181 n y C5 C6 KMP doub 182 n y C5 H5 KMP sing 183 n n C6 O29 KMP sing 184 n n C9 C10 KMP sing 185 n y C9 O13 KMP doub 186 n n C10 C11 KMP doub 187 n y C10 O27 KMP sing 188 n n C11 C14 KMP sing 189 n y C11 O12 KMP sing 190 n y C14 C15 KMP doub 191 n y C14 C19 KMP sing 192 n y C15 C16 KMP sing 193 n y C15 H15 KMP sing 194 n n C16 C17 KMP doub 195 n y C16 H16 KMP sing 196 n n C17 C18 KMP sing 197 n y C17 O24 KMP sing 198 n n C18 C19 KMP doub 199 n y C18 H18 KMP sing 200 n n C19 H19 KMP sing 201 n n O24 H24 KMP sing 202 n n O27 H27 KMP sing 203 n n O29 H29 KMP sing 204 n n O30 H30 KMP sing 205 n n # _atom_sites.entry_id 5AUX _atom_sites.fract_transf_matrix[1][1] 0.021357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KMP A 1 400 400 KMP DRG . C 3 CL A 1 401 401 CL CL . D 4 HOH A 1 501 249 HOH HOH . D 4 HOH A 2 502 197 HOH HOH . D 4 HOH A 3 503 98 HOH HOH . D 4 HOH A 4 504 162 HOH HOH . D 4 HOH A 5 505 19 HOH HOH . D 4 HOH A 6 506 155 HOH HOH . D 4 HOH A 7 507 168 HOH HOH . D 4 HOH A 8 508 216 HOH HOH . D 4 HOH A 9 509 83 HOH HOH . D 4 HOH A 10 510 250 HOH HOH . D 4 HOH A 11 511 118 HOH HOH . D 4 HOH A 12 512 161 HOH HOH . D 4 HOH A 13 513 115 HOH HOH . D 4 HOH A 14 514 167 HOH HOH . D 4 HOH A 15 515 85 HOH HOH . D 4 HOH A 16 516 166 HOH HOH . D 4 HOH A 17 517 111 HOH HOH . D 4 HOH A 18 518 147 HOH HOH . D 4 HOH A 19 519 252 HOH HOH . D 4 HOH A 20 520 80 HOH HOH . D 4 HOH A 21 521 241 HOH HOH . D 4 HOH A 22 522 164 HOH HOH . D 4 HOH A 23 523 136 HOH HOH . D 4 HOH A 24 524 41 HOH HOH . D 4 HOH A 25 525 145 HOH HOH . D 4 HOH A 26 526 263 HOH HOH . D 4 HOH A 27 527 60 HOH HOH . D 4 HOH A 28 528 51 HOH HOH . D 4 HOH A 29 529 86 HOH HOH . D 4 HOH A 30 530 57 HOH HOH . D 4 HOH A 31 531 163 HOH HOH . D 4 HOH A 32 532 210 HOH HOH . D 4 HOH A 33 533 149 HOH HOH . D 4 HOH A 34 534 235 HOH HOH . D 4 HOH A 35 535 198 HOH HOH . D 4 HOH A 36 536 69 HOH HOH . D 4 HOH A 37 537 114 HOH HOH . D 4 HOH A 38 538 61 HOH HOH . D 4 HOH A 39 539 156 HOH HOH . D 4 HOH A 40 540 110 HOH HOH . D 4 HOH A 41 541 21 HOH HOH . D 4 HOH A 42 542 40 HOH HOH . D 4 HOH A 43 543 17 HOH HOH . D 4 HOH A 44 544 160 HOH HOH . D 4 HOH A 45 545 36 HOH HOH . D 4 HOH A 46 546 62 HOH HOH . D 4 HOH A 47 547 200 HOH HOH . D 4 HOH A 48 548 68 HOH HOH . D 4 HOH A 49 549 254 HOH HOH . D 4 HOH A 50 550 26 HOH HOH . D 4 HOH A 51 551 100 HOH HOH . D 4 HOH A 52 552 185 HOH HOH . D 4 HOH A 53 553 54 HOH HOH . D 4 HOH A 54 554 143 HOH HOH . D 4 HOH A 55 555 172 HOH HOH . D 4 HOH A 56 556 117 HOH HOH . D 4 HOH A 57 557 124 HOH HOH . D 4 HOH A 58 558 20 HOH HOH . D 4 HOH A 59 559 73 HOH HOH . D 4 HOH A 60 560 11 HOH HOH . D 4 HOH A 61 561 59 HOH HOH . D 4 HOH A 62 562 14 HOH HOH . D 4 HOH A 63 563 90 HOH HOH . D 4 HOH A 64 564 77 HOH HOH . D 4 HOH A 65 565 43 HOH HOH . D 4 HOH A 66 566 44 HOH HOH . D 4 HOH A 67 567 32 HOH HOH . D 4 HOH A 68 568 7 HOH HOH . D 4 HOH A 69 569 31 HOH HOH . D 4 HOH A 70 570 70 HOH HOH . D 4 HOH A 71 571 56 HOH HOH . D 4 HOH A 72 572 129 HOH HOH . D 4 HOH A 73 573 92 HOH HOH . D 4 HOH A 74 574 50 HOH HOH . D 4 HOH A 75 575 10 HOH HOH . D 4 HOH A 76 576 178 HOH HOH . D 4 HOH A 77 577 261 HOH HOH . D 4 HOH A 78 578 120 HOH HOH . D 4 HOH A 79 579 76 HOH HOH . D 4 HOH A 80 580 23 HOH HOH . D 4 HOH A 81 581 22 HOH HOH . D 4 HOH A 82 582 28 HOH HOH . D 4 HOH A 83 583 1 HOH HOH . D 4 HOH A 84 584 29 HOH HOH . D 4 HOH A 85 585 169 HOH HOH . D 4 HOH A 86 586 18 HOH HOH . D 4 HOH A 87 587 33 HOH HOH . D 4 HOH A 88 588 242 HOH HOH . D 4 HOH A 89 589 144 HOH HOH . D 4 HOH A 90 590 84 HOH HOH . D 4 HOH A 91 591 101 HOH HOH . D 4 HOH A 92 592 257 HOH HOH . D 4 HOH A 93 593 123 HOH HOH . D 4 HOH A 94 594 233 HOH HOH . D 4 HOH A 95 595 2 HOH HOH . D 4 HOH A 96 596 74 HOH HOH . D 4 HOH A 97 597 203 HOH HOH . D 4 HOH A 98 598 204 HOH HOH . D 4 HOH A 99 599 212 HOH HOH . D 4 HOH A 100 600 24 HOH HOH . D 4 HOH A 101 601 39 HOH HOH . D 4 HOH A 102 602 13 HOH HOH . D 4 HOH A 103 603 96 HOH HOH . D 4 HOH A 104 604 219 HOH HOH . D 4 HOH A 105 605 97 HOH HOH . D 4 HOH A 106 606 78 HOH HOH . D 4 HOH A 107 607 125 HOH HOH . D 4 HOH A 108 608 4 HOH HOH . D 4 HOH A 109 609 248 HOH HOH . D 4 HOH A 110 610 137 HOH HOH . D 4 HOH A 111 611 221 HOH HOH . D 4 HOH A 112 612 103 HOH HOH . D 4 HOH A 113 613 52 HOH HOH . D 4 HOH A 114 614 188 HOH HOH . D 4 HOH A 115 615 174 HOH HOH . D 4 HOH A 116 616 82 HOH HOH . D 4 HOH A 117 617 154 HOH HOH . D 4 HOH A 118 618 139 HOH HOH . D 4 HOH A 119 619 5 HOH HOH . D 4 HOH A 120 620 245 HOH HOH . D 4 HOH A 121 621 64 HOH HOH . D 4 HOH A 122 622 27 HOH HOH . D 4 HOH A 123 623 94 HOH HOH . D 4 HOH A 124 624 16 HOH HOH . D 4 HOH A 125 625 259 HOH HOH . D 4 HOH A 126 626 227 HOH HOH . D 4 HOH A 127 627 205 HOH HOH . D 4 HOH A 128 628 132 HOH HOH . D 4 HOH A 129 629 99 HOH HOH . D 4 HOH A 130 630 63 HOH HOH . D 4 HOH A 131 631 81 HOH HOH . D 4 HOH A 132 632 140 HOH HOH . D 4 HOH A 133 633 8 HOH HOH . D 4 HOH A 134 634 251 HOH HOH . D 4 HOH A 135 635 128 HOH HOH . D 4 HOH A 136 636 34 HOH HOH . D 4 HOH A 137 637 187 HOH HOH . D 4 HOH A 138 638 215 HOH HOH . D 4 HOH A 139 639 126 HOH HOH . D 4 HOH A 140 640 127 HOH HOH . D 4 HOH A 141 641 138 HOH HOH . D 4 HOH A 142 642 53 HOH HOH . D 4 HOH A 143 643 247 HOH HOH . D 4 HOH A 144 644 37 HOH HOH . D 4 HOH A 145 645 3 HOH HOH . D 4 HOH A 146 646 231 HOH HOH . D 4 HOH A 147 647 116 HOH HOH . D 4 HOH A 148 648 181 HOH HOH . D 4 HOH A 149 649 25 HOH HOH . D 4 HOH A 150 650 105 HOH HOH . D 4 HOH A 151 651 255 HOH HOH . D 4 HOH A 152 652 6 HOH HOH . D 4 HOH A 153 653 89 HOH HOH . D 4 HOH A 154 654 223 HOH HOH . D 4 HOH A 155 655 109 HOH HOH . D 4 HOH A 156 656 102 HOH HOH . D 4 HOH A 157 657 238 HOH HOH . D 4 HOH A 158 658 202 HOH HOH . D 4 HOH A 159 659 179 HOH HOH . D 4 HOH A 160 660 234 HOH HOH . D 4 HOH A 161 661 38 HOH HOH . D 4 HOH A 162 662 66 HOH HOH . D 4 HOH A 163 663 225 HOH HOH . D 4 HOH A 164 664 42 HOH HOH . D 4 HOH A 165 665 246 HOH HOH . D 4 HOH A 166 666 75 HOH HOH . D 4 HOH A 167 667 222 HOH HOH . D 4 HOH A 168 668 209 HOH HOH . D 4 HOH A 169 669 175 HOH HOH . D 4 HOH A 170 670 65 HOH HOH . D 4 HOH A 171 671 173 HOH HOH . D 4 HOH A 172 672 87 HOH HOH . D 4 HOH A 173 673 176 HOH HOH . D 4 HOH A 174 674 95 HOH HOH . D 4 HOH A 175 675 236 HOH HOH . D 4 HOH A 176 676 153 HOH HOH . D 4 HOH A 177 677 113 HOH HOH . D 4 HOH A 178 678 91 HOH HOH . D 4 HOH A 179 679 9 HOH HOH . D 4 HOH A 180 680 141 HOH HOH . D 4 HOH A 181 681 108 HOH HOH . D 4 HOH A 182 682 199 HOH HOH . D 4 HOH A 183 683 79 HOH HOH . D 4 HOH A 184 684 142 HOH HOH . D 4 HOH A 185 685 49 HOH HOH . D 4 HOH A 186 686 207 HOH HOH . D 4 HOH A 187 687 35 HOH HOH . D 4 HOH A 188 688 180 HOH HOH . D 4 HOH A 189 689 131 HOH HOH . D 4 HOH A 190 690 119 HOH HOH . D 4 HOH A 191 691 67 HOH HOH . D 4 HOH A 192 692 46 HOH HOH . D 4 HOH A 193 693 72 HOH HOH . D 4 HOH A 194 694 264 HOH HOH . D 4 HOH A 195 695 239 HOH HOH . D 4 HOH A 196 696 55 HOH HOH . D 4 HOH A 197 697 48 HOH HOH . D 4 HOH A 198 698 201 HOH HOH . D 4 HOH A 199 699 157 HOH HOH . D 4 HOH A 200 700 134 HOH HOH . D 4 HOH A 201 701 45 HOH HOH . D 4 HOH A 202 702 112 HOH HOH . D 4 HOH A 203 703 30 HOH HOH . D 4 HOH A 204 704 146 HOH HOH . D 4 HOH A 205 705 135 HOH HOH . D 4 HOH A 206 706 256 HOH HOH . D 4 HOH A 207 707 194 HOH HOH . D 4 HOH A 208 708 71 HOH HOH . D 4 HOH A 209 709 58 HOH HOH . D 4 HOH A 210 710 159 HOH HOH . D 4 HOH A 211 711 150 HOH HOH . D 4 HOH A 212 712 177 HOH HOH . D 4 HOH A 213 713 262 HOH HOH . D 4 HOH A 214 714 224 HOH HOH . D 4 HOH A 215 715 258 HOH HOH . D 4 HOH A 216 716 226 HOH HOH . D 4 HOH A 217 717 232 HOH HOH . D 4 HOH A 218 718 12 HOH HOH . D 4 HOH A 219 719 229 HOH HOH . D 4 HOH A 220 720 193 HOH HOH . D 4 HOH A 221 721 206 HOH HOH . D 4 HOH A 222 722 191 HOH HOH . D 4 HOH A 223 723 243 HOH HOH . D 4 HOH A 224 724 152 HOH HOH . D 4 HOH A 225 725 218 HOH HOH . D 4 HOH A 226 726 190 HOH HOH . D 4 HOH A 227 727 165 HOH HOH . D 4 HOH A 228 728 196 HOH HOH . D 4 HOH A 229 729 88 HOH HOH . D 4 HOH A 230 730 217 HOH HOH . D 4 HOH A 231 731 266 HOH HOH . D 4 HOH A 232 732 93 HOH HOH . D 4 HOH A 233 733 107 HOH HOH . D 4 HOH A 234 734 237 HOH HOH . D 4 HOH A 235 735 253 HOH HOH . D 4 HOH A 236 736 182 HOH HOH . D 4 HOH A 237 737 151 HOH HOH . D 4 HOH A 238 738 260 HOH HOH . D 4 HOH A 239 739 195 HOH HOH . D 4 HOH A 240 740 170 HOH HOH . D 4 HOH A 241 741 148 HOH HOH . D 4 HOH A 242 742 228 HOH HOH . D 4 HOH A 243 743 211 HOH HOH . D 4 HOH A 244 744 158 HOH HOH . D 4 HOH A 245 745 186 HOH HOH . D 4 HOH A 246 746 192 HOH HOH . D 4 HOH A 247 747 213 HOH HOH . D 4 HOH A 248 748 171 HOH HOH . D 4 HOH A 249 749 104 HOH HOH . D 4 HOH A 250 750 133 HOH HOH . D 4 HOH A 251 751 244 HOH HOH . D 4 HOH A 252 752 189 HOH HOH . D 4 HOH A 253 753 47 HOH HOH . D 4 HOH A 254 754 240 HOH HOH . D 4 HOH A 255 755 265 HOH HOH . D 4 HOH A 256 756 15 HOH HOH . D 4 HOH A 257 757 183 HOH HOH . D 4 HOH A 258 758 122 HOH HOH . D 4 HOH A 259 759 230 HOH HOH . D 4 HOH A 260 760 184 HOH HOH . D 4 HOH A 261 761 130 HOH HOH . D 4 HOH A 262 762 121 HOH HOH . D 4 HOH A 263 763 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KMP . . . B 2 -20.137 -1.161 -12.13 1 30.66 ? C1 KMP 400 A 1 HETATM 2 C C2 KMP . . . B 2 -21.224 -0.812 -12.927 1 32.48 ? C2 KMP 400 A 1 HETATM 3 C C3 KMP . . . B 2 -22.042 0.278 -12.617 1 30.71 ? C3 KMP 400 A 1 HETATM 4 C C4 KMP . . . B 2 -21.761 1.004 -11.462 1 29.23 ? C4 KMP 400 A 1 HETATM 5 C C5 KMP . . . B 2 -20.683 0.658 -10.653 1 28.21 ? C5 KMP 400 A 1 HETATM 6 C C6 KMP . . . B 2 -19.867 -0.418 -10.985 1 31.45 ? C6 KMP 400 A 1 HETATM 7 C C9 KMP . . . B 2 -23.139 0.616 -13.403 1 32.4 ? C9 KMP 400 A 1 HETATM 8 C C10 KMP . . . B 2 -23.948 1.663 -12.973 1 28.83 ? C10 KMP 400 A 1 HETATM 9 C C11 KMP . . . B 2 -23.661 2.413 -11.828 1 23.21 ? C11 KMP 400 A 1 HETATM 10 C C14 KMP . . . B 2 -24.419 3.429 -11.234 1 26.16 ? C14 KMP 400 A 1 HETATM 11 C C15 KMP . . . B 2 -25.56 3.972 -11.812 1 26.75 ? C15 KMP 400 A 1 HETATM 12 C C16 KMP . . . B 2 -26.285 4.951 -11.14 1 24.15 ? C16 KMP 400 A 1 HETATM 13 C C17 KMP . . . B 2 -25.883 5.378 -9.881 1 21.56 ? C17 KMP 400 A 1 HETATM 14 C C18 KMP . . . B 2 -24.754 4.827 -9.277 1 24.46 ? C18 KMP 400 A 1 HETATM 15 C C19 KMP . . . B 2 -24.031 3.854 -9.964 1 22.61 ? C19 KMP 400 A 1 HETATM 16 O O12 KMP . . . B 2 -22.559 2.057 -11.105 1 28.76 ? O12 KMP 400 A 1 HETATM 17 O O13 KMP . . . B 2 -23.417 -0.012 -14.429 1 32.94 ? O13 KMP 400 A 1 HETATM 18 O O24 KMP . . . B 2 -26.614 6.33 -9.249 1 24.68 ? O24 KMP 400 A 1 HETATM 19 O O27 KMP . . . B 2 -25.04 1.957 -13.734 1 30.2 ? O27 KMP 400 A 1 HETATM 20 O O29 KMP . . . B 2 -18.813 -0.741 -10.183 1 33.32 ? O29 KMP 400 A 1 HETATM 21 O O30 KMP . . . B 2 -21.52 -1.509 -14.059 1 35.23 ? O30 KMP 400 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #