data_5AV0 # _model_server_result.job_id S8926oOKms7KpevzFECnqw _model_server_result.datetime_utc '2024-11-13 08:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5av0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5AV0 # _exptl.entry_id 5AV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3,4-dihydroxyphenyl)-7-hydroxy-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AV0 _cell.length_a 46.732 _cell.length_b 62.087 _cell.length_c 88.101 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id 47X _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3,4-dihydroxyphenyl)-7-hydroxy-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAA 47X doub 1 n y CAA CAB 47X sing 2 n y CAA HAA 47X sing 3 n n CAC CAB 47X doub 4 n y CAB OAS 47X sing 5 n n CAF CAC 47X sing 6 n y CAC HAC 47X sing 7 n n CAE CAD 47X sing 8 n y CAD HAD 47X sing 9 n n CAJ CAE 47X sing 10 n n CAE CAF 47X doub 11 n y OAG CAF 47X sing 12 n n CAH OAG 47X sing 13 n n CAI CAH 47X doub 14 n n CAH HAH 47X sing 15 n n CAK CAI 47X sing 16 n n CAI CAJ 47X sing 17 n n OAT CAJ 47X doub 18 n n CAP CAK 47X doub 19 n y CAL CAK 47X sing 20 n y CAM CAL 47X doub 21 n y CAL HAL 47X sing 22 n n CAN CAM 47X sing 23 n y OAR CAM 47X sing 24 n n OAQ CAN 47X sing 25 n n CAN CAO 47X doub 26 n y CAO CAP 47X sing 27 n y CAO HAO 47X sing 28 n n CAP HAP 47X sing 29 n n OAQ HOAQ 47X sing 30 n n OAR HOAR 47X sing 31 n n OAS HOAS 47X sing 32 n n # _atom_sites.entry_id 5AV0 _atom_sites.fract_transf_matrix[1][1] 0.021399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 47X A 1 300 300 47X DRG . C 3 HOH A 1 401 185 HOH HOH . C 3 HOH A 2 402 116 HOH HOH . C 3 HOH A 3 403 82 HOH HOH . C 3 HOH A 4 404 81 HOH HOH . C 3 HOH A 5 405 111 HOH HOH . C 3 HOH A 6 406 129 HOH HOH . C 3 HOH A 7 407 56 HOH HOH . C 3 HOH A 8 408 131 HOH HOH . C 3 HOH A 9 409 148 HOH HOH . C 3 HOH A 10 410 177 HOH HOH . C 3 HOH A 11 411 99 HOH HOH . C 3 HOH A 12 412 74 HOH HOH . C 3 HOH A 13 413 170 HOH HOH . C 3 HOH A 14 414 146 HOH HOH . C 3 HOH A 15 415 155 HOH HOH . C 3 HOH A 16 416 173 HOH HOH . C 3 HOH A 17 417 46 HOH HOH . C 3 HOH A 18 418 189 HOH HOH . C 3 HOH A 19 419 95 HOH HOH . C 3 HOH A 20 420 53 HOH HOH . C 3 HOH A 21 421 121 HOH HOH . C 3 HOH A 22 422 57 HOH HOH . C 3 HOH A 23 423 37 HOH HOH . C 3 HOH A 24 424 8 HOH HOH . C 3 HOH A 25 425 12 HOH HOH . C 3 HOH A 26 426 147 HOH HOH . C 3 HOH A 27 427 171 HOH HOH . C 3 HOH A 28 428 30 HOH HOH . C 3 HOH A 29 429 7 HOH HOH . C 3 HOH A 30 430 105 HOH HOH . C 3 HOH A 31 431 33 HOH HOH . C 3 HOH A 32 432 142 HOH HOH . C 3 HOH A 33 433 59 HOH HOH . C 3 HOH A 34 434 52 HOH HOH . C 3 HOH A 35 435 17 HOH HOH . C 3 HOH A 36 436 94 HOH HOH . C 3 HOH A 37 437 62 HOH HOH . C 3 HOH A 38 438 108 HOH HOH . C 3 HOH A 39 439 134 HOH HOH . C 3 HOH A 40 440 85 HOH HOH . C 3 HOH A 41 441 2 HOH HOH . C 3 HOH A 42 442 163 HOH HOH . C 3 HOH A 43 443 5 HOH HOH . C 3 HOH A 44 444 175 HOH HOH . C 3 HOH A 45 445 31 HOH HOH . C 3 HOH A 46 446 63 HOH HOH . C 3 HOH A 47 447 90 HOH HOH . C 3 HOH A 48 448 168 HOH HOH . C 3 HOH A 49 449 10 HOH HOH . C 3 HOH A 50 450 75 HOH HOH . C 3 HOH A 51 451 1 HOH HOH . C 3 HOH A 52 452 21 HOH HOH . C 3 HOH A 53 453 71 HOH HOH . C 3 HOH A 54 454 125 HOH HOH . C 3 HOH A 55 455 188 HOH HOH . C 3 HOH A 56 456 72 HOH HOH . C 3 HOH A 57 457 23 HOH HOH . C 3 HOH A 58 458 25 HOH HOH . C 3 HOH A 59 459 36 HOH HOH . C 3 HOH A 60 460 76 HOH HOH . C 3 HOH A 61 461 65 HOH HOH . C 3 HOH A 62 462 48 HOH HOH . C 3 HOH A 63 463 34 HOH HOH . C 3 HOH A 64 464 113 HOH HOH . C 3 HOH A 65 465 140 HOH HOH . C 3 HOH A 66 466 97 HOH HOH . C 3 HOH A 67 467 44 HOH HOH . C 3 HOH A 68 468 109 HOH HOH . C 3 HOH A 69 469 19 HOH HOH . C 3 HOH A 70 470 160 HOH HOH . C 3 HOH A 71 471 87 HOH HOH . C 3 HOH A 72 472 127 HOH HOH . C 3 HOH A 73 473 152 HOH HOH . C 3 HOH A 74 474 40 HOH HOH . C 3 HOH A 75 475 133 HOH HOH . C 3 HOH A 76 476 41 HOH HOH . C 3 HOH A 77 477 14 HOH HOH . C 3 HOH A 78 478 159 HOH HOH . C 3 HOH A 79 479 47 HOH HOH . C 3 HOH A 80 480 55 HOH HOH . C 3 HOH A 81 481 101 HOH HOH . C 3 HOH A 82 482 43 HOH HOH . C 3 HOH A 83 483 174 HOH HOH . C 3 HOH A 84 484 107 HOH HOH . C 3 HOH A 85 485 26 HOH HOH . C 3 HOH A 86 486 70 HOH HOH . C 3 HOH A 87 487 102 HOH HOH . C 3 HOH A 88 488 167 HOH HOH . C 3 HOH A 89 489 11 HOH HOH . C 3 HOH A 90 490 35 HOH HOH . C 3 HOH A 91 491 93 HOH HOH . C 3 HOH A 92 492 49 HOH HOH . C 3 HOH A 93 493 9 HOH HOH . C 3 HOH A 94 494 16 HOH HOH . C 3 HOH A 95 495 186 HOH HOH . C 3 HOH A 96 496 84 HOH HOH . C 3 HOH A 97 497 69 HOH HOH . C 3 HOH A 98 498 150 HOH HOH . C 3 HOH A 99 499 89 HOH HOH . C 3 HOH A 100 500 106 HOH HOH . C 3 HOH A 101 501 60 HOH HOH . C 3 HOH A 102 502 100 HOH HOH . C 3 HOH A 103 503 20 HOH HOH . C 3 HOH A 104 504 50 HOH HOH . C 3 HOH A 105 505 179 HOH HOH . C 3 HOH A 106 506 139 HOH HOH . C 3 HOH A 107 507 3 HOH HOH . C 3 HOH A 108 508 80 HOH HOH . C 3 HOH A 109 509 98 HOH HOH . C 3 HOH A 110 510 64 HOH HOH . C 3 HOH A 111 511 114 HOH HOH . C 3 HOH A 112 512 45 HOH HOH . C 3 HOH A 113 513 51 HOH HOH . C 3 HOH A 114 514 112 HOH HOH . C 3 HOH A 115 515 4 HOH HOH . C 3 HOH A 116 516 88 HOH HOH . C 3 HOH A 117 517 161 HOH HOH . C 3 HOH A 118 518 15 HOH HOH . C 3 HOH A 119 519 191 HOH HOH . C 3 HOH A 120 520 24 HOH HOH . C 3 HOH A 121 521 169 HOH HOH . C 3 HOH A 122 522 38 HOH HOH . C 3 HOH A 123 523 192 HOH HOH . C 3 HOH A 124 524 96 HOH HOH . C 3 HOH A 125 525 165 HOH HOH . C 3 HOH A 126 526 32 HOH HOH . C 3 HOH A 127 527 119 HOH HOH . C 3 HOH A 128 528 136 HOH HOH . C 3 HOH A 129 529 28 HOH HOH . C 3 HOH A 130 530 61 HOH HOH . C 3 HOH A 131 531 153 HOH HOH . C 3 HOH A 132 532 27 HOH HOH . C 3 HOH A 133 533 6 HOH HOH . C 3 HOH A 134 534 77 HOH HOH . C 3 HOH A 135 535 162 HOH HOH . C 3 HOH A 136 536 124 HOH HOH . C 3 HOH A 137 537 83 HOH HOH . C 3 HOH A 138 538 151 HOH HOH . C 3 HOH A 139 539 91 HOH HOH . C 3 HOH A 140 540 29 HOH HOH . C 3 HOH A 141 541 156 HOH HOH . C 3 HOH A 142 542 79 HOH HOH . C 3 HOH A 143 543 67 HOH HOH . C 3 HOH A 144 544 18 HOH HOH . C 3 HOH A 145 545 68 HOH HOH . C 3 HOH A 146 546 73 HOH HOH . C 3 HOH A 147 547 66 HOH HOH . C 3 HOH A 148 548 39 HOH HOH . C 3 HOH A 149 549 187 HOH HOH . C 3 HOH A 150 550 181 HOH HOH . C 3 HOH A 151 551 128 HOH HOH . C 3 HOH A 152 552 58 HOH HOH . C 3 HOH A 153 553 138 HOH HOH . C 3 HOH A 154 554 122 HOH HOH . C 3 HOH A 155 555 154 HOH HOH . C 3 HOH A 156 556 183 HOH HOH . C 3 HOH A 157 557 130 HOH HOH . C 3 HOH A 158 558 157 HOH HOH . C 3 HOH A 159 559 182 HOH HOH . C 3 HOH A 160 560 145 HOH HOH . C 3 HOH A 161 561 110 HOH HOH . C 3 HOH A 162 562 184 HOH HOH . C 3 HOH A 163 563 120 HOH HOH . C 3 HOH A 164 564 104 HOH HOH . C 3 HOH A 165 565 103 HOH HOH . C 3 HOH A 166 566 78 HOH HOH . C 3 HOH A 167 567 123 HOH HOH . C 3 HOH A 168 568 86 HOH HOH . C 3 HOH A 169 569 180 HOH HOH . C 3 HOH A 170 570 42 HOH HOH . C 3 HOH A 171 571 132 HOH HOH . C 3 HOH A 172 572 144 HOH HOH . C 3 HOH A 173 573 149 HOH HOH . C 3 HOH A 174 574 115 HOH HOH . C 3 HOH A 175 575 143 HOH HOH . C 3 HOH A 176 576 166 HOH HOH . C 3 HOH A 177 577 137 HOH HOH . C 3 HOH A 178 578 92 HOH HOH . C 3 HOH A 179 579 54 HOH HOH . C 3 HOH A 180 580 117 HOH HOH . C 3 HOH A 181 581 126 HOH HOH . C 3 HOH A 182 582 164 HOH HOH . C 3 HOH A 183 583 141 HOH HOH . C 3 HOH A 184 584 178 HOH HOH . C 3 HOH A 185 585 172 HOH HOH . C 3 HOH A 186 586 190 HOH HOH . C 3 HOH A 187 587 22 HOH HOH . C 3 HOH A 188 588 13 HOH HOH . C 3 HOH A 189 589 176 HOH HOH . C 3 HOH A 190 590 118 HOH HOH . C 3 HOH A 191 591 158 HOH HOH . C 3 HOH A 192 592 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 47X . . . B 2 -24.799 4.998 -8.879 1 26.59 ? CAA 47X 300 A 1 HETATM 2 C CAB 47X . . . B 2 -25.889 5.41 -9.648 1 24.91 ? CAB 47X 300 A 1 HETATM 3 C CAC 47X . . . B 2 -26.065 4.916 -10.927 1 25.41 ? CAC 47X 300 A 1 HETATM 4 C CAD 47X . . . B 2 -23.875 4.09 -9.397 1 25.2 ? CAD 47X 300 A 1 HETATM 5 C CAE 47X . . . B 2 -24.052 3.587 -10.679 1 24.45 ? CAE 47X 300 A 1 HETATM 6 C CAF 47X . . . B 2 -25.145 4.011 -11.437 1 26.46 ? CAF 47X 300 A 1 HETATM 7 O OAG 47X . . . B 2 -25.322 3.519 -12.698 1 30.92 ? OAG 47X 300 A 1 HETATM 8 C CAH 47X . . . B 2 -24.401 2.644 -13.194 1 31.38 ? CAH 47X 300 A 1 HETATM 9 C CAI 47X . . . B 2 -23.297 2.209 -12.477 1 30.48 ? CAI 47X 300 A 1 HETATM 10 C CAJ 47X . . . B 2 -23.122 2.68 -11.179 1 30.37 ? CAJ 47X 300 A 1 HETATM 11 C CAK 47X . . . B 2 -22.424 1.302 -13.085 1 35.96 ? CAK 47X 300 A 1 HETATM 12 C CAL 47X . . . B 2 -21.965 0.186 -12.392 1 35.54 ? CAL 47X 300 A 1 HETATM 13 C CAM 47X . . . B 2 -21.103 -0.701 -13.023 1 39.86 ? CAM 47X 300 A 1 HETATM 14 C CAN 47X . . . B 2 -20.709 -0.491 -14.342 1 40.47 ? CAN 47X 300 A 1 HETATM 15 C CAO 47X . . . B 2 -21.168 0.616 -15.052 1 40.41 ? CAO 47X 300 A 1 HETATM 16 C CAP 47X . . . B 2 -22.033 1.505 -14.413 1 38.26 ? CAP 47X 300 A 1 HETATM 17 O OAQ 47X . . . B 2 -19.865 -1.41 -14.886 1 49.09 ? OAQ 47X 300 A 1 HETATM 18 O OAR 47X . . . B 2 -20.615 -1.804 -12.387 1 43.87 ? OAR 47X 300 A 1 HETATM 19 O OAS 47X . . . B 2 -26.79 6.303 -9.163 1 23.48 ? OAS 47X 300 A 1 HETATM 20 O OAT 47X . . . B 2 -22.159 2.341 -10.488 1 29.54 ? OAT 47X 300 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 20 #