data_5AV3
#
_model_server_result.job_id            Kh0JifjV8Cr7eGaj9hnbqQ 
_model_server_result.datetime_utc      '2024-10-19 22:19:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5av3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":300}' 
#
_entry.id    5AV3 
#
_exptl.entry_id    5AV3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.236 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5AV3 
_cell.length_a            46.884 
_cell.length_b            62.357 
_cell.length_c            88.329 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AV3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H10 O6' 
_chem_comp.formula_weight    286.236 
_chem_comp.id                KMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     KAEMPHEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 KMP doub 173 n y 
C1 C6 KMP sing 174 n y 
C1 H1 KMP sing 175 n n 
C2 C3 KMP sing 176 n y 
C2 O30 KMP sing 177 n n 
C3 C4 KMP doub 178 n y 
C3 C9 KMP sing 179 n y 
C4 C5 KMP sing 180 n y 
C4 O12 KMP sing 181 n y 
C5 C6 KMP doub 182 n y 
C5 H5 KMP sing 183 n n 
C6 O29 KMP sing 184 n n 
C9 C10 KMP sing 185 n y 
C9 O13 KMP doub 186 n n 
C10 C11 KMP doub 187 n y 
C10 O27 KMP sing 188 n n 
C11 C14 KMP sing 189 n y 
C11 O12 KMP sing 190 n y 
C14 C15 KMP doub 191 n y 
C14 C19 KMP sing 192 n y 
C15 C16 KMP sing 193 n y 
C15 H15 KMP sing 194 n n 
C16 C17 KMP doub 195 n y 
C16 H16 KMP sing 196 n n 
C17 C18 KMP sing 197 n y 
C17 O24 KMP sing 198 n n 
C18 C19 KMP doub 199 n y 
C18 H18 KMP sing 200 n n 
C19 H19 KMP sing 201 n n 
O24 H24 KMP sing 202 n n 
O27 H27 KMP sing 203 n n 
O29 H29 KMP sing 204 n n 
O30 H30 KMP sing 205 n n 
#
_atom_sites.entry_id                     5AV3 
_atom_sites.fract_transf_matrix[1][1]    0.021329 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 KMP A 1 300 300 KMP DRG . 
C 3 IOD A 1 301 301 IOD I . 
D 3 IOD A 1 302 302 IOD I . 
E 3 IOD A 1 303 303 IOD I . 
F 3 IOD A 1 304 304 IOD I . 
G 3 IOD A 1 305 305 IOD I . 
H 3 IOD A 1 306 306 IOD I . 
I 3 IOD A 1 307 307 IOD I . 
J 3 IOD A 1 308 308 IOD I . 
K 3 IOD A 1 309 309 IOD I . 
L 4 HOH A 1 401 201 HOH HOH . 
L 4 HOH A 2 402 200 HOH HOH . 
L 4 HOH A 3 403 183 HOH HOH . 
L 4 HOH A 4 404 106 HOH HOH . 
L 4 HOH A 5 405 120 HOH HOH . 
L 4 HOH A 6 406 138 HOH HOH . 
L 4 HOH A 7 407 119 HOH HOH . 
L 4 HOH A 8 408 7 HOH HOH . 
L 4 HOH A 9 409 209 HOH HOH . 
L 4 HOH A 10 410 111 HOH HOH . 
L 4 HOH A 11 411 11 HOH HOH . 
L 4 HOH A 12 412 71 HOH HOH . 
L 4 HOH A 13 413 129 HOH HOH . 
L 4 HOH A 14 414 137 HOH HOH . 
L 4 HOH A 15 415 148 HOH HOH . 
L 4 HOH A 16 416 181 HOH HOH . 
L 4 HOH A 17 417 122 HOH HOH . 
L 4 HOH A 18 418 128 HOH HOH . 
L 4 HOH A 19 419 13 HOH HOH . 
L 4 HOH A 20 420 75 HOH HOH . 
L 4 HOH A 21 421 34 HOH HOH . 
L 4 HOH A 22 422 117 HOH HOH . 
L 4 HOH A 23 423 124 HOH HOH . 
L 4 HOH A 24 424 136 HOH HOH . 
L 4 HOH A 25 425 20 HOH HOH . 
L 4 HOH A 26 426 25 HOH HOH . 
L 4 HOH A 27 427 115 HOH HOH . 
L 4 HOH A 28 428 130 HOH HOH . 
L 4 HOH A 29 429 29 HOH HOH . 
L 4 HOH A 30 430 132 HOH HOH . 
L 4 HOH A 31 431 102 HOH HOH . 
L 4 HOH A 32 432 167 HOH HOH . 
L 4 HOH A 33 433 58 HOH HOH . 
L 4 HOH A 34 434 17 HOH HOH . 
L 4 HOH A 35 435 163 HOH HOH . 
L 4 HOH A 36 436 84 HOH HOH . 
L 4 HOH A 37 437 26 HOH HOH . 
L 4 HOH A 38 438 186 HOH HOH . 
L 4 HOH A 39 439 103 HOH HOH . 
L 4 HOH A 40 440 64 HOH HOH . 
L 4 HOH A 41 441 141 HOH HOH . 
L 4 HOH A 42 442 57 HOH HOH . 
L 4 HOH A 43 443 33 HOH HOH . 
L 4 HOH A 44 444 19 HOH HOH . 
L 4 HOH A 45 445 87 HOH HOH . 
L 4 HOH A 46 446 55 HOH HOH . 
L 4 HOH A 47 447 194 HOH HOH . 
L 4 HOH A 48 448 53 HOH HOH . 
L 4 HOH A 49 449 73 HOH HOH . 
L 4 HOH A 50 450 56 HOH HOH . 
L 4 HOH A 51 451 193 HOH HOH . 
L 4 HOH A 52 452 44 HOH HOH . 
L 4 HOH A 53 453 112 HOH HOH . 
L 4 HOH A 54 454 78 HOH HOH . 
L 4 HOH A 55 455 187 HOH HOH . 
L 4 HOH A 56 456 173 HOH HOH . 
L 4 HOH A 57 457 198 HOH HOH . 
L 4 HOH A 58 458 83 HOH HOH . 
L 4 HOH A 59 459 28 HOH HOH . 
L 4 HOH A 60 460 66 HOH HOH . 
L 4 HOH A 61 461 43 HOH HOH . 
L 4 HOH A 62 462 14 HOH HOH . 
L 4 HOH A 63 463 12 HOH HOH . 
L 4 HOH A 64 464 70 HOH HOH . 
L 4 HOH A 65 465 72 HOH HOH . 
L 4 HOH A 66 466 121 HOH HOH . 
L 4 HOH A 67 467 41 HOH HOH . 
L 4 HOH A 68 468 113 HOH HOH . 
L 4 HOH A 69 469 59 HOH HOH . 
L 4 HOH A 70 470 208 HOH HOH . 
L 4 HOH A 71 471 153 HOH HOH . 
L 4 HOH A 72 472 1 HOH HOH . 
L 4 HOH A 73 473 49 HOH HOH . 
L 4 HOH A 74 474 150 HOH HOH . 
L 4 HOH A 75 475 162 HOH HOH . 
L 4 HOH A 76 476 77 HOH HOH . 
L 4 HOH A 77 477 50 HOH HOH . 
L 4 HOH A 78 478 68 HOH HOH . 
L 4 HOH A 79 479 91 HOH HOH . 
L 4 HOH A 80 480 31 HOH HOH . 
L 4 HOH A 81 481 105 HOH HOH . 
L 4 HOH A 82 482 172 HOH HOH . 
L 4 HOH A 83 483 10 HOH HOH . 
L 4 HOH A 84 484 97 HOH HOH . 
L 4 HOH A 85 485 52 HOH HOH . 
L 4 HOH A 86 486 4 HOH HOH . 
L 4 HOH A 87 487 140 HOH HOH . 
L 4 HOH A 88 488 104 HOH HOH . 
L 4 HOH A 89 489 32 HOH HOH . 
L 4 HOH A 90 490 46 HOH HOH . 
L 4 HOH A 91 491 125 HOH HOH . 
L 4 HOH A 92 492 9 HOH HOH . 
L 4 HOH A 93 493 79 HOH HOH . 
L 4 HOH A 94 494 54 HOH HOH . 
L 4 HOH A 95 495 90 HOH HOH . 
L 4 HOH A 96 496 27 HOH HOH . 
L 4 HOH A 97 497 2 HOH HOH . 
L 4 HOH A 98 498 5 HOH HOH . 
L 4 HOH A 99 499 81 HOH HOH . 
L 4 HOH A 100 500 40 HOH HOH . 
L 4 HOH A 101 501 99 HOH HOH . 
L 4 HOH A 102 502 62 HOH HOH . 
L 4 HOH A 103 503 118 HOH HOH . 
L 4 HOH A 104 504 180 HOH HOH . 
L 4 HOH A 105 505 110 HOH HOH . 
L 4 HOH A 106 506 94 HOH HOH . 
L 4 HOH A 107 507 204 HOH HOH . 
L 4 HOH A 108 508 144 HOH HOH . 
L 4 HOH A 109 509 22 HOH HOH . 
L 4 HOH A 110 510 51 HOH HOH . 
L 4 HOH A 111 511 123 HOH HOH . 
L 4 HOH A 112 512 189 HOH HOH . 
L 4 HOH A 113 513 16 HOH HOH . 
L 4 HOH A 114 514 151 HOH HOH . 
L 4 HOH A 115 515 45 HOH HOH . 
L 4 HOH A 116 516 96 HOH HOH . 
L 4 HOH A 117 517 42 HOH HOH . 
L 4 HOH A 118 518 76 HOH HOH . 
L 4 HOH A 119 519 184 HOH HOH . 
L 4 HOH A 120 520 195 HOH HOH . 
L 4 HOH A 121 521 92 HOH HOH . 
L 4 HOH A 122 522 80 HOH HOH . 
L 4 HOH A 123 523 38 HOH HOH . 
L 4 HOH A 124 524 127 HOH HOH . 
L 4 HOH A 125 525 36 HOH HOH . 
L 4 HOH A 126 526 24 HOH HOH . 
L 4 HOH A 127 527 67 HOH HOH . 
L 4 HOH A 128 528 165 HOH HOH . 
L 4 HOH A 129 529 23 HOH HOH . 
L 4 HOH A 130 530 3 HOH HOH . 
L 4 HOH A 131 531 212 HOH HOH . 
L 4 HOH A 132 532 166 HOH HOH . 
L 4 HOH A 133 533 159 HOH HOH . 
L 4 HOH A 134 534 74 HOH HOH . 
L 4 HOH A 135 535 37 HOH HOH . 
L 4 HOH A 136 536 60 HOH HOH . 
L 4 HOH A 137 537 182 HOH HOH . 
L 4 HOH A 138 538 168 HOH HOH . 
L 4 HOH A 139 539 134 HOH HOH . 
L 4 HOH A 140 540 154 HOH HOH . 
L 4 HOH A 141 541 139 HOH HOH . 
L 4 HOH A 142 542 30 HOH HOH . 
L 4 HOH A 143 543 8 HOH HOH . 
L 4 HOH A 144 544 190 HOH HOH . 
L 4 HOH A 145 545 145 HOH HOH . 
L 4 HOH A 146 546 89 HOH HOH . 
L 4 HOH A 147 547 48 HOH HOH . 
L 4 HOH A 148 548 185 HOH HOH . 
L 4 HOH A 149 549 171 HOH HOH . 
L 4 HOH A 150 550 160 HOH HOH . 
L 4 HOH A 151 551 88 HOH HOH . 
L 4 HOH A 152 552 18 HOH HOH . 
L 4 HOH A 153 553 47 HOH HOH . 
L 4 HOH A 154 554 156 HOH HOH . 
L 4 HOH A 155 555 131 HOH HOH . 
L 4 HOH A 156 556 205 HOH HOH . 
L 4 HOH A 157 557 196 HOH HOH . 
L 4 HOH A 158 558 206 HOH HOH . 
L 4 HOH A 159 559 69 HOH HOH . 
L 4 HOH A 160 560 100 HOH HOH . 
L 4 HOH A 161 561 155 HOH HOH . 
L 4 HOH A 162 562 82 HOH HOH . 
L 4 HOH A 163 563 199 HOH HOH . 
L 4 HOH A 164 564 21 HOH HOH . 
L 4 HOH A 165 565 98 HOH HOH . 
L 4 HOH A 166 566 191 HOH HOH . 
L 4 HOH A 167 567 35 HOH HOH . 
L 4 HOH A 168 568 158 HOH HOH . 
L 4 HOH A 169 569 107 HOH HOH . 
L 4 HOH A 170 570 177 HOH HOH . 
L 4 HOH A 171 571 86 HOH HOH . 
L 4 HOH A 172 572 116 HOH HOH . 
L 4 HOH A 173 573 142 HOH HOH . 
L 4 HOH A 174 574 147 HOH HOH . 
L 4 HOH A 175 575 188 HOH HOH . 
L 4 HOH A 176 576 197 HOH HOH . 
L 4 HOH A 177 577 210 HOH HOH . 
L 4 HOH A 178 578 114 HOH HOH . 
L 4 HOH A 179 579 152 HOH HOH . 
L 4 HOH A 180 580 157 HOH HOH . 
L 4 HOH A 181 581 61 HOH HOH . 
L 4 HOH A 182 582 170 HOH HOH . 
L 4 HOH A 183 583 109 HOH HOH . 
L 4 HOH A 184 584 101 HOH HOH . 
L 4 HOH A 185 585 207 HOH HOH . 
L 4 HOH A 186 586 85 HOH HOH . 
L 4 HOH A 187 587 202 HOH HOH . 
L 4 HOH A 188 588 169 HOH HOH . 
L 4 HOH A 189 589 39 HOH HOH . 
L 4 HOH A 190 590 174 HOH HOH . 
L 4 HOH A 191 591 143 HOH HOH . 
L 4 HOH A 192 592 192 HOH HOH . 
L 4 HOH A 193 593 176 HOH HOH . 
L 4 HOH A 194 594 15 HOH HOH . 
L 4 HOH A 195 595 161 HOH HOH . 
L 4 HOH A 196 596 135 HOH HOH . 
L 4 HOH A 197 597 179 HOH HOH . 
L 4 HOH A 198 598 6 HOH HOH . 
L 4 HOH A 199 599 126 HOH HOH . 
L 4 HOH A 200 600 178 HOH HOH . 
L 4 HOH A 201 601 146 HOH HOH . 
L 4 HOH A 202 602 149 HOH HOH . 
L 4 HOH A 203 603 164 HOH HOH . 
L 4 HOH A 204 604 133 HOH HOH . 
L 4 HOH A 205 605 65 HOH HOH . 
L 4 HOH A 206 606 95 HOH HOH . 
L 4 HOH A 207 607 175 HOH HOH . 
L 4 HOH A 208 608 93 HOH HOH . 
L 4 HOH A 209 609 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KMP . . . B 2 -20.178 -1.067 -12.011 1 30.66 ? C1 KMP 300 A 1 
HETATM 2 C C2 KMP . . . B 2 -21.279 -0.783 -12.81 1 30.64 ? C2 KMP 300 A 1 
HETATM 3 C C3 KMP . . . B 2 -22.136 0.274 -12.516 1 28.82 ? C3 KMP 300 A 1 
HETATM 4 C C4 KMP . . . B 2 -21.882 1.044 -11.383 1 28.3 ? C4 KMP 300 A 1 
HETATM 5 C C5 KMP . . . B 2 -20.782 0.771 -10.579 1 28.32 ? C5 KMP 300 A 1 
HETATM 6 C C6 KMP . . . B 2 -19.933 -0.285 -10.888 1 29.68 ? C6 KMP 300 A 1 
HETATM 7 C C9 KMP . . . B 2 -23.242 0.528 -13.315 1 29.41 ? C9 KMP 300 A 1 
HETATM 8 C C10 KMP . . . B 2 -24.095 1.549 -12.928 1 28.67 ? C10 KMP 300 A 1 
HETATM 9 C C11 KMP . . . B 2 -23.84 2.347 -11.809 1 27.11 ? C11 KMP 300 A 1 
HETATM 10 C C14 KMP . . . B 2 -24.629 3.368 -11.269 1 26.91 ? C14 KMP 300 A 1 
HETATM 11 C C15 KMP . . . B 2 -24.29 3.776 -9.983 1 24.33 ? C15 KMP 300 A 1 
HETATM 12 C C16 KMP . . . B 2 -25.016 4.76 -9.333 1 25.29 ? C16 KMP 300 A 1 
HETATM 13 C C17 KMP . . . B 2 -26.099 5.357 -9.96 1 26.37 ? C17 KMP 300 A 1 
HETATM 14 C C18 KMP . . . B 2 -26.451 4.955 -11.245 1 25.69 ? C18 KMP 300 A 1 
HETATM 15 C C19 KMP . . . B 2 -25.723 3.959 -11.898 1 25.99 ? C19 KMP 300 A 1 
HETATM 16 O O12 KMP . . . B 2 -22.721 2.071 -11.069 1 25.25 ? O12 KMP 300 A 1 
HETATM 17 O O13 KMP . . . B 2 -23.481 -0.162 -14.308 1 31.3 ? O13 KMP 300 A 1 
HETATM 18 O O24 KMP . . . B 2 -26.802 6.33 -9.312 1 24.67 ? O24 KMP 300 A 1 
HETATM 19 O O27 KMP . . . B 2 -25.202 1.763 -13.688 1 29.73 ? O27 KMP 300 A 1 
HETATM 20 O O29 KMP . . . B 2 -18.864 -0.55 -10.088 1 29.74 ? O29 KMP 300 A 1 
HETATM 21 O O30 KMP . . . B 2 -21.578 -1.509 -13.916 1 32.53 ? O30 KMP 300 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#