data_5AVD # _model_server_result.job_id ZSAnW7gxJyx_4ad2hZijyA _model_server_result.datetime_utc '2024-11-13 20:47:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5avd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5AVD # _exptl.entry_id 5AVD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AVD _cell.length_a 49.992 _cell.length_b 58.21 _cell.length_c 74.425 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 45 1_555 A SG CYS 46 A CYS 61 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 127 A CYS 142 1_555 A SG CYS 194 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 158 A CYS 173 1_555 A SG CYS 174 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 184 A CYS 199 1_555 A SG CYS 214 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5AVD _atom_sites.fract_transf_matrix[1][1] 0.020003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 301 SO4 SO4 . C 2 SO4 A 1 302 302 SO4 SO4 . D 3 HOH A 1 401 401 HOH HOH . D 3 HOH A 2 402 409 HOH HOH . D 3 HOH A 3 403 403 HOH HOH . D 3 HOH A 4 404 404 HOH HOH . D 3 HOH A 5 405 405 HOH HOH . D 3 HOH A 6 406 2 HOH HOH . D 3 HOH A 7 407 467 HOH HOH . D 3 HOH A 8 408 406 HOH HOH . D 3 HOH A 9 409 408 HOH HOH . D 3 HOH A 10 410 407 HOH HOH . D 3 HOH A 11 411 410 HOH HOH . D 3 HOH A 12 412 411 HOH HOH . D 3 HOH A 13 413 616 HOH HOH . D 3 HOH A 14 414 412 HOH HOH . D 3 HOH A 15 415 413 HOH HOH . D 3 HOH A 16 416 414 HOH HOH . D 3 HOH A 17 417 415 HOH HOH . D 3 HOH A 18 418 417 HOH HOH . D 3 HOH A 19 419 416 HOH HOH . D 3 HOH A 20 420 418 HOH HOH . D 3 HOH A 21 421 421 HOH HOH . D 3 HOH A 22 422 422 HOH HOH . D 3 HOH A 23 423 420 HOH HOH . D 3 HOH A 24 424 423 HOH HOH . D 3 HOH A 25 425 424 HOH HOH . D 3 HOH A 26 426 429 HOH HOH . D 3 HOH A 27 427 419 HOH HOH . D 3 HOH A 28 428 425 HOH HOH . D 3 HOH A 29 429 426 HOH HOH . D 3 HOH A 30 430 428 HOH HOH . D 3 HOH A 31 431 427 HOH HOH . D 3 HOH A 32 432 431 HOH HOH . D 3 HOH A 33 433 430 HOH HOH . D 3 HOH A 34 434 433 HOH HOH . D 3 HOH A 35 435 449 HOH HOH . D 3 HOH A 36 436 434 HOH HOH . D 3 HOH A 37 437 432 HOH HOH . D 3 HOH A 38 438 437 HOH HOH . D 3 HOH A 39 439 436 HOH HOH . D 3 HOH A 40 440 435 HOH HOH . D 3 HOH A 41 441 439 HOH HOH . D 3 HOH A 42 442 501 HOH HOH . D 3 HOH A 43 443 442 HOH HOH . D 3 HOH A 44 444 440 HOH HOH . D 3 HOH A 45 445 438 HOH HOH . D 3 HOH A 46 446 448 HOH HOH . D 3 HOH A 47 447 443 HOH HOH . D 3 HOH A 48 448 447 HOH HOH . D 3 HOH A 49 449 445 HOH HOH . D 3 HOH A 50 450 446 HOH HOH . D 3 HOH A 51 451 444 HOH HOH . D 3 HOH A 52 452 450 HOH HOH . D 3 HOH A 53 453 454 HOH HOH . D 3 HOH A 54 454 453 HOH HOH . D 3 HOH A 55 455 441 HOH HOH . D 3 HOH A 56 456 452 HOH HOH . D 3 HOH A 57 457 554 HOH HOH . D 3 HOH A 58 458 461 HOH HOH . D 3 HOH A 59 459 459 HOH HOH . D 3 HOH A 60 460 457 HOH HOH . D 3 HOH A 61 461 462 HOH HOH . D 3 HOH A 62 462 455 HOH HOH . D 3 HOH A 63 463 464 HOH HOH . D 3 HOH A 64 464 458 HOH HOH . D 3 HOH A 65 465 477 HOH HOH . D 3 HOH A 66 466 451 HOH HOH . D 3 HOH A 67 467 466 HOH HOH . D 3 HOH A 68 468 469 HOH HOH . D 3 HOH A 69 469 465 HOH HOH . D 3 HOH A 70 470 456 HOH HOH . D 3 HOH A 71 471 474 HOH HOH . D 3 HOH A 72 472 468 HOH HOH . D 3 HOH A 73 473 471 HOH HOH . D 3 HOH A 74 474 475 HOH HOH . D 3 HOH A 75 475 473 HOH HOH . D 3 HOH A 76 476 472 HOH HOH . D 3 HOH A 77 477 490 HOH HOH . D 3 HOH A 78 478 479 HOH HOH . D 3 HOH A 79 479 480 HOH HOH . D 3 HOH A 80 480 482 HOH HOH . D 3 HOH A 81 481 481 HOH HOH . D 3 HOH A 82 482 485 HOH HOH . D 3 HOH A 83 483 476 HOH HOH . D 3 HOH A 84 484 489 HOH HOH . D 3 HOH A 85 485 498 HOH HOH . D 3 HOH A 86 486 484 HOH HOH . D 3 HOH A 87 487 491 HOH HOH . D 3 HOH A 88 488 486 HOH HOH . D 3 HOH A 89 489 488 HOH HOH . D 3 HOH A 90 490 483 HOH HOH . D 3 HOH A 91 491 478 HOH HOH . D 3 HOH A 92 492 492 HOH HOH . D 3 HOH A 93 493 470 HOH HOH . D 3 HOH A 94 494 494 HOH HOH . D 3 HOH A 95 495 502 HOH HOH . D 3 HOH A 96 496 504 HOH HOH . D 3 HOH A 97 497 496 HOH HOH . D 3 HOH A 98 498 503 HOH HOH . D 3 HOH A 99 499 499 HOH HOH . D 3 HOH A 100 500 487 HOH HOH . D 3 HOH A 101 501 497 HOH HOH . D 3 HOH A 102 502 460 HOH HOH . D 3 HOH A 103 503 507 HOH HOH . D 3 HOH A 104 504 505 HOH HOH . D 3 HOH A 105 505 506 HOH HOH . D 3 HOH A 106 506 402 HOH HOH . D 3 HOH A 107 507 515 HOH HOH . D 3 HOH A 108 508 513 HOH HOH . D 3 HOH A 109 509 508 HOH HOH . D 3 HOH A 110 510 510 HOH HOH . D 3 HOH A 111 511 521 HOH HOH . D 3 HOH A 112 512 522 HOH HOH . D 3 HOH A 113 513 511 HOH HOH . D 3 HOH A 114 514 512 HOH HOH . D 3 HOH A 115 515 517 HOH HOH . D 3 HOH A 116 516 495 HOH HOH . D 3 HOH A 117 517 509 HOH HOH . D 3 HOH A 118 518 514 HOH HOH . D 3 HOH A 119 519 516 HOH HOH . D 3 HOH A 120 520 523 HOH HOH . D 3 HOH A 121 521 519 HOH HOH . D 3 HOH A 122 522 518 HOH HOH . D 3 HOH A 123 523 525 HOH HOH . D 3 HOH A 124 524 463 HOH HOH . D 3 HOH A 125 525 524 HOH HOH . D 3 HOH A 126 526 526 HOH HOH . D 3 HOH A 127 527 527 HOH HOH . D 3 HOH A 128 528 520 HOH HOH . D 3 HOH A 129 529 528 HOH HOH . D 3 HOH A 130 530 537 HOH HOH . D 3 HOH A 131 531 530 HOH HOH . D 3 HOH A 132 532 532 HOH HOH . D 3 HOH A 133 533 533 HOH HOH . D 3 HOH A 134 534 531 HOH HOH . D 3 HOH A 135 535 535 HOH HOH . D 3 HOH A 136 536 540 HOH HOH . D 3 HOH A 137 537 538 HOH HOH . D 3 HOH A 138 538 500 HOH HOH . D 3 HOH A 139 539 560 HOH HOH . D 3 HOH A 140 540 543 HOH HOH . D 3 HOH A 141 541 536 HOH HOH . D 3 HOH A 142 542 541 HOH HOH . D 3 HOH A 143 543 542 HOH HOH . D 3 HOH A 144 544 591 HOH HOH . D 3 HOH A 145 545 545 HOH HOH . D 3 HOH A 146 546 539 HOH HOH . D 3 HOH A 147 547 534 HOH HOH . D 3 HOH A 148 548 546 HOH HOH . D 3 HOH A 149 549 529 HOH HOH . D 3 HOH A 150 550 548 HOH HOH . D 3 HOH A 151 551 550 HOH HOH . D 3 HOH A 152 552 553 HOH HOH . D 3 HOH A 153 553 555 HOH HOH . D 3 HOH A 154 554 551 HOH HOH . D 3 HOH A 155 555 552 HOH HOH . D 3 HOH A 156 556 544 HOH HOH . D 3 HOH A 157 557 558 HOH HOH . D 3 HOH A 158 558 556 HOH HOH . D 3 HOH A 159 559 565 HOH HOH . D 3 HOH A 160 560 578 HOH HOH . D 3 HOH A 161 561 562 HOH HOH . D 3 HOH A 162 562 557 HOH HOH . D 3 HOH A 163 563 569 HOH HOH . D 3 HOH A 164 564 559 HOH HOH . D 3 HOH A 165 565 641 HOH HOH . D 3 HOH A 166 566 549 HOH HOH . D 3 HOH A 167 567 567 HOH HOH . D 3 HOH A 168 568 564 HOH HOH . D 3 HOH A 169 569 561 HOH HOH . D 3 HOH A 170 570 563 HOH HOH . D 3 HOH A 171 571 547 HOH HOH . D 3 HOH A 172 572 576 HOH HOH . D 3 HOH A 173 573 566 HOH HOH . D 3 HOH A 174 574 575 HOH HOH . D 3 HOH A 175 575 568 HOH HOH . D 3 HOH A 176 576 571 HOH HOH . D 3 HOH A 177 577 574 HOH HOH . D 3 HOH A 178 578 573 HOH HOH . D 3 HOH A 179 579 615 HOH HOH . D 3 HOH A 180 580 585 HOH HOH . D 3 HOH A 181 581 580 HOH HOH . D 3 HOH A 182 582 572 HOH HOH . D 3 HOH A 183 583 581 HOH HOH . D 3 HOH A 184 584 579 HOH HOH . D 3 HOH A 185 585 582 HOH HOH . D 3 HOH A 186 586 597 HOH HOH . D 3 HOH A 187 587 584 HOH HOH . D 3 HOH A 188 588 4 HOH HOH . D 3 HOH A 189 589 583 HOH HOH . D 3 HOH A 190 590 600 HOH HOH . D 3 HOH A 191 591 570 HOH HOH . D 3 HOH A 192 592 588 HOH HOH . D 3 HOH A 193 593 587 HOH HOH . D 3 HOH A 194 594 622 HOH HOH . D 3 HOH A 195 595 586 HOH HOH . D 3 HOH A 196 596 592 HOH HOH . D 3 HOH A 197 597 593 HOH HOH . D 3 HOH A 198 598 594 HOH HOH . D 3 HOH A 199 599 590 HOH HOH . D 3 HOH A 200 600 589 HOH HOH . D 3 HOH A 201 601 595 HOH HOH . D 3 HOH A 202 602 596 HOH HOH . D 3 HOH A 203 603 599 HOH HOH . D 3 HOH A 204 604 603 HOH HOH . D 3 HOH A 205 605 493 HOH HOH . D 3 HOH A 206 606 598 HOH HOH . D 3 HOH A 207 607 605 HOH HOH . D 3 HOH A 208 608 606 HOH HOH . D 3 HOH A 209 609 602 HOH HOH . D 3 HOH A 210 610 608 HOH HOH . D 3 HOH A 211 611 607 HOH HOH . D 3 HOH A 212 612 610 HOH HOH . D 3 HOH A 213 613 601 HOH HOH . D 3 HOH A 214 614 612 HOH HOH . D 3 HOH A 215 615 611 HOH HOH . D 3 HOH A 216 616 609 HOH HOH . D 3 HOH A 217 617 613 HOH HOH . D 3 HOH A 218 618 614 HOH HOH . D 3 HOH A 219 619 604 HOH HOH . D 3 HOH A 220 620 618 HOH HOH . D 3 HOH A 221 621 619 HOH HOH . D 3 HOH A 222 622 621 HOH HOH . D 3 HOH A 223 623 620 HOH HOH . D 3 HOH A 224 624 623 HOH HOH . D 3 HOH A 225 625 617 HOH HOH . D 3 HOH A 226 626 1 HOH HOH . D 3 HOH A 227 627 624 HOH HOH . D 3 HOH A 228 628 626 HOH HOH . D 3 HOH A 229 629 629 HOH HOH . D 3 HOH A 230 630 627 HOH HOH . D 3 HOH A 231 631 625 HOH HOH . D 3 HOH A 232 632 628 HOH HOH . D 3 HOH A 233 633 631 HOH HOH . D 3 HOH A 234 634 632 HOH HOH . D 3 HOH A 235 635 630 HOH HOH . D 3 HOH A 236 636 577 HOH HOH . D 3 HOH A 237 637 634 HOH HOH . D 3 HOH A 238 638 633 HOH HOH . D 3 HOH A 239 639 635 HOH HOH . D 3 HOH A 240 640 638 HOH HOH . D 3 HOH A 241 641 636 HOH HOH . D 3 HOH A 242 642 637 HOH HOH . D 3 HOH A 243 643 639 HOH HOH . D 3 HOH A 244 644 640 HOH HOH . D 3 HOH A 245 645 642 HOH HOH . D 3 HOH A 246 646 643 HOH HOH . D 3 HOH A 247 647 644 HOH HOH . D 3 HOH A 248 648 645 HOH HOH . D 3 HOH A 249 649 646 HOH HOH . D 3 HOH A 250 650 647 HOH HOH . D 3 HOH A 251 651 648 HOH HOH . D 3 HOH A 252 652 649 HOH HOH . D 3 HOH A 253 653 650 HOH HOH . D 3 HOH A 254 654 652 HOH HOH . D 3 HOH A 255 655 651 HOH HOH . D 3 HOH A 256 656 653 HOH HOH . D 3 HOH A 257 657 655 HOH HOH . D 3 HOH A 258 658 654 HOH HOH . D 3 HOH A 259 659 657 HOH HOH . D 3 HOH A 260 660 656 HOH HOH . D 3 HOH A 261 661 658 HOH HOH . D 3 HOH A 262 662 659 HOH HOH . D 3 HOH A 263 663 660 HOH HOH . D 3 HOH A 264 664 661 HOH HOH . D 3 HOH A 265 665 662 HOH HOH . D 3 HOH A 266 666 663 HOH HOH . D 3 HOH A 267 667 3 HOH HOH . D 3 HOH A 268 668 665 HOH HOH . D 3 HOH A 269 669 664 HOH HOH . D 3 HOH A 270 670 666 HOH HOH . D 3 HOH A 271 671 667 HOH HOH . D 3 HOH A 272 672 668 HOH HOH . D 3 HOH A 273 673 669 HOH HOH . D 3 HOH A 274 674 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -8.123 21.456 61.08 0.7 51.17 ? S SO4 301 A 1 HETATM 2 O O1 SO4 . . . B 2 -9.491 21.126 60.579 0.7 67.07 ? O1 SO4 301 A 1 HETATM 3 O O2 SO4 . . . B 2 -7.454 22.126 59.91 0.7 12.24 ? O2 SO4 301 A 1 HETATM 4 O O3 SO4 . . . B 2 -8.264 22.106 62.49 0.7 16.19 ? O3 SO4 301 A 1 HETATM 5 O O4 SO4 . . . B 2 -7.39 20.198 61.36 0.7 92.11 ? O4 SO4 301 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #