data_5AVL # _model_server_result.job_id MpDyOD3R0w9H4F6yltCSvQ _model_server_result.datetime_utc '2024-10-31 07:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5avl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5AVL # _exptl.entry_id 5AVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.479 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[4-[4-[[2-[(2-methylpropan-2-yl)oxycarbonyl]-3-oxidanyl-4-(trifluoromethyl)phenyl]methoxy]phenyl]phenyl]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AVL _cell.length_a 124.909 _cell.length_b 124.909 _cell.length_c 91.92 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H25 F3 O6' _chem_comp.formula_weight 502.479 _chem_comp.id 4KQ _chem_comp.mon_nstd_flag . _chem_comp.name '2-[4-[4-[[2-[(2-methylpropan-2-yl)oxycarbonyl]-3-oxidanyl-4-(trifluoromethyl)phenyl]methoxy]phenyl]phenyl]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C5 4KQ sing 1 n n C6 C5 4KQ sing 2 n n O27 C26 4KQ doub 3 n n C5 O4 4KQ sing 4 n n C5 C7 4KQ sing 5 n n C26 O28 4KQ sing 6 n n C26 C25 4KQ sing 7 n n C17 C18 4KQ doub 8 n y C17 C16 4KQ sing 9 n y O4 C3 4KQ sing 10 n n C18 C13 4KQ sing 11 n y C11 C10 4KQ sing 12 n n C11 O12 4KQ sing 13 n n C24 C23 4KQ doub 14 n y C24 C19 4KQ sing 15 n y C3 C2 4KQ sing 16 n n C3 O9 4KQ doub 17 n n C23 C22 4KQ sing 18 n y C19 C16 4KQ sing 19 n n C19 C20 4KQ doub 20 n y C10 C2 4KQ doub 21 n y C10 C29 4KQ sing 22 n y C16 C15 4KQ doub 23 n y C22 C25 4KQ sing 24 n n C22 C21 4KQ doub 25 n y C2 C1 4KQ sing 26 n y C13 O12 4KQ sing 27 n n C13 C14 4KQ doub 28 n y C20 C21 4KQ sing 29 n y C29 C30 4KQ doub 30 n y F35 C32 4KQ sing 31 n n C1 O36 4KQ sing 32 n n C1 C31 4KQ doub 33 n y C30 C31 4KQ sing 34 n y C31 C32 4KQ sing 35 n n F33 C32 4KQ sing 36 n n C15 C14 4KQ sing 37 n y C32 F34 4KQ sing 38 n n C20 H1 4KQ sing 39 n n C24 H2 4KQ sing 40 n n C15 H3 4KQ sing 41 n n C17 H4 4KQ sing 42 n n C21 H5 4KQ sing 43 n n C23 H6 4KQ sing 44 n n C29 H7 4KQ sing 45 n n C30 H8 4KQ sing 46 n n C14 H9 4KQ sing 47 n n C18 H10 4KQ sing 48 n n C6 H11 4KQ sing 49 n n C6 H12 4KQ sing 50 n n C6 H13 4KQ sing 51 n n C7 H14 4KQ sing 52 n n C7 H15 4KQ sing 53 n n C7 H16 4KQ sing 54 n n C8 H17 4KQ sing 55 n n C8 H18 4KQ sing 56 n n C8 H19 4KQ sing 57 n n C25 H20 4KQ sing 58 n n C25 H21 4KQ sing 59 n n C11 H22 4KQ sing 60 n n C11 H23 4KQ sing 61 n n O36 H24 4KQ sing 62 n n O28 H25 4KQ sing 63 n n # _atom_sites.entry_id 5AVL _atom_sites.fract_transf_matrix[1][1] 0.008006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 4KQ A 1 501 1 4KQ UNL . D 4 HOH A 1 601 118 HOH HOH . D 4 HOH A 2 602 31 HOH HOH . D 4 HOH A 3 603 2 HOH HOH . D 4 HOH A 4 604 13 HOH HOH . D 4 HOH A 5 605 129 HOH HOH . D 4 HOH A 6 606 1 HOH HOH . D 4 HOH A 7 607 100 HOH HOH . D 4 HOH A 8 608 158 HOH HOH . D 4 HOH A 9 609 139 HOH HOH . D 4 HOH A 10 610 19 HOH HOH . D 4 HOH A 11 611 104 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 10 HOH HOH . D 4 HOH A 14 614 26 HOH HOH . D 4 HOH A 15 615 87 HOH HOH . D 4 HOH A 16 616 6 HOH HOH . D 4 HOH A 17 617 75 HOH HOH . D 4 HOH A 18 618 5 HOH HOH . D 4 HOH A 19 619 85 HOH HOH . D 4 HOH A 20 620 86 HOH HOH . D 4 HOH A 21 621 22 HOH HOH . D 4 HOH A 22 622 63 HOH HOH . D 4 HOH A 23 623 59 HOH HOH . D 4 HOH A 24 624 62 HOH HOH . D 4 HOH A 25 625 55 HOH HOH . D 4 HOH A 26 626 49 HOH HOH . D 4 HOH A 27 627 116 HOH HOH . D 4 HOH A 28 628 17 HOH HOH . D 4 HOH A 29 629 50 HOH HOH . D 4 HOH A 30 630 113 HOH HOH . D 4 HOH A 31 631 46 HOH HOH . D 4 HOH A 32 632 98 HOH HOH . D 4 HOH A 33 633 93 HOH HOH . D 4 HOH A 34 634 25 HOH HOH . D 4 HOH A 35 635 8 HOH HOH . D 4 HOH A 36 636 95 HOH HOH . D 4 HOH A 37 637 107 HOH HOH . D 4 HOH A 38 638 21 HOH HOH . E 4 HOH B 1 801 33 HOH HOH . E 4 HOH B 2 802 29 HOH HOH . E 4 HOH B 3 803 48 HOH HOH . E 4 HOH B 4 804 168 HOH HOH . E 4 HOH B 5 805 42 HOH HOH . E 4 HOH B 6 806 74 HOH HOH . E 4 HOH B 7 807 15 HOH HOH . E 4 HOH B 8 808 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 4KQ . . . C 3 46.681 17.594 -3.969 1 46.92 ? C20 4KQ 501 A 1 HETATM 2 C C24 4KQ . . . C 3 47.168 15.297 -4.327 1 48.94 ? C24 4KQ 501 A 1 HETATM 3 C C15 4KQ . . . C 3 44.075 16.598 -3.168 1 44.74 ? C15 4KQ 501 A 1 HETATM 4 C C17 4KQ . . . C 3 44.208 15.226 -5.105 1 38.86 ? C17 4KQ 501 A 1 HETATM 5 C C21 4KQ . . . C 3 48.021 17.926 -3.918 1 48.67 ? C21 4KQ 501 A 1 HETATM 6 C C23 4KQ . . . C 3 48.513 15.612 -4.258 1 52.8 ? C23 4KQ 501 A 1 HETATM 7 C C29 4KQ . . . C 3 38.159 13.173 -3.936 1 38.75 ? C29 4KQ 501 A 1 HETATM 8 C C30 4KQ . . . C 3 36.839 13.035 -3.58 1 36.17 ? C30 4KQ 501 A 1 HETATM 9 C C14 4KQ . . . C 3 42.721 16.378 -3.071 1 44.3 ? C14 4KQ 501 A 1 HETATM 10 C C18 4KQ . . . C 3 42.852 14.992 -5.032 1 37.82 ? C18 4KQ 501 A 1 HETATM 11 C C19 4KQ . . . C 3 46.236 16.299 -4.174 1 43.95 ? C19 4KQ 501 A 1 HETATM 12 C C16 4KQ . . . C 3 44.83 16.026 -4.172 1 41.93 ? C16 4KQ 501 A 1 HETATM 13 C C2 4KQ . . . C 3 37.956 15.558 -4.056 1 39.06 ? C2 4KQ 501 A 1 HETATM 14 C C22 4KQ . . . C 3 48.945 16.916 -4.058 1 53.17 ? C22 4KQ 501 A 1 HETATM 15 C C10 4KQ . . . C 3 38.727 14.406 -4.174 1 38.1 ? C10 4KQ 501 A 1 HETATM 16 C C31 4KQ . . . C 3 36.089 14.167 -3.466 1 38.01 ? C31 4KQ 501 A 1 HETATM 17 C C13 4KQ . . . C 3 42.131 15.57 -4.009 1 41.78 ? C13 4KQ 501 A 1 HETATM 18 C C1 4KQ . . . C 3 36.636 15.402 -3.7 1 37.64 ? C1 4KQ 501 A 1 HETATM 19 C C3 4KQ . . . C 3 38.331 16.978 -4.277 1 43.93 ? C3 4KQ 501 A 1 HETATM 20 C C26 4KQ . . . C 3 51.002 16.89 -5.317 1 58.54 ? C26 4KQ 501 A 1 HETATM 21 C C6 4KQ . . . C 3 38.859 18.996 -6.411 1 40.92 ? C6 4KQ 501 A 1 HETATM 22 C C7 4KQ . . . C 3 40.642 19.085 -4.636 1 44.88 ? C7 4KQ 501 A 1 HETATM 23 C C8 4KQ . . . C 3 41.001 17.941 -6.705 1 35.3 ? C8 4KQ 501 A 1 HETATM 24 C C25 4KQ . . . C 3 50.39 17.262 -4.005 1 54.26 ? C25 4KQ 501 A 1 HETATM 25 C C11 4KQ . . . C 3 40.148 14.286 -4.526 1 39.14 ? C11 4KQ 501 A 1 HETATM 26 C C32 4KQ . . . C 3 34.702 13.987 -3.092 1 43.99 ? C32 4KQ 501 A 1 HETATM 27 C C5 4KQ . . . C 3 39.953 18.263 -5.685 1 41.83 ? C5 4KQ 501 A 1 HETATM 28 O O9 4KQ . . . C 3 37.624 17.872 -3.818 1 49.09 ? O9 4KQ 501 A 1 HETATM 29 O O27 4KQ . . . C 3 50.396 16.629 -6.344 1 58.31 ? O27 4KQ 501 A 1 HETATM 30 O O36 4KQ . . . C 3 35.855 16.521 -3.558 1 34.99 ? O36 4KQ 501 A 1 HETATM 31 O O28 4KQ . . . C 3 52.35 16.868 -5.23 1 61.83 ? O28 4KQ 501 A 1 HETATM 32 O O12 4KQ . . . C 3 40.786 15.355 -3.865 1 41.44 ? O12 4KQ 501 A 1 HETATM 33 O O4 4KQ . . . C 3 39.459 17.055 -5.086 1 45.51 ? O4 4KQ 501 A 1 HETATM 34 F F33 4KQ . . . C 3 34.341 12.726 -3.431 1 50.87 ? F33 4KQ 501 A 1 HETATM 35 F F34 4KQ . . . C 3 34.476 14.271 -1.777 1 55.62 ? F34 4KQ 501 A 1 HETATM 36 F F35 4KQ . . . C 3 33.819 14.731 -3.77 1 45.08 ? F35 4KQ 501 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #