data_5AW9 # _model_server_result.job_id k3ZFvTSQEFL5yhTR1IFAaA _model_server_result.datetime_utc '2024-11-24 07:32:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5aw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 5AW9 # _exptl.entry_id 5AW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.299 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRAFLUOROMAGNESATE(2-) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.5 _cell.angle_gamma 90 _cell.entry_id 5AW9 _cell.length_a 219.972 _cell.length_b 50.666 _cell.length_c 163.066 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG B 4001 NAG 4 n D NAG 2 C 2 NAG B 4002 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 114 B ASN 114 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 159 B ASN 159 1_555 K C1 NAG . B NAG 4021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O VAL 334 A VAL 329 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc2 A O ALA 335 A ALA 330 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc3 A O VAL 337 A VAL 332 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc4 A OE1 GLU 339 A GLU 334 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.356 ? metalc ? metalc5 A OD1 ASP 381 A ASP 376 1_555 E MG MF4 . A MF4 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 A OD2 ASP 381 A ASP 376 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 A O THR 383 A THR 378 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 A OD1 ASP 722 A ASP 717 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc9 A O LEU 730 A LEU 725 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc10 A O LYS 731 A LYS 726 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc11 A O ALA 733 A ALA 728 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc12 A OD2 ASP 752 A ASP 747 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc13 A O THR 784 A THR 779 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc14 A OG SER 787 A SER 782 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc15 A OD1 ASN 788 A ASN 783 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc16 A OD1 ASN 788 A ASN 783 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc17 A OE2 GLU 791 A GLU 786 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc18 A OD2 ASP 816 A ASP 811 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc19 A OD2 ASP 816 A ASP 811 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc20 F MG MG . A MG 2002 1_555 L O HOH . A HOH 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc21 F MG MG . A MG 2002 1_555 L O HOH . A HOH 2131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc22 G K K . A K 2003 1_555 L O HOH . A HOH 2143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc23 I K K . A K 2005 1_555 L O HOH . A HOH 2195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.172 ? # _chem_comp.formula 'F4 Mg -2' _chem_comp.formula_weight 100.299 _chem_comp.id MF4 _chem_comp.mon_nstd_flag . _chem_comp.name TETRAFLUOROMAGNESATE(2-) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MAGNESIUMTETRAFLUORIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG F1 MF4 sing 314 n n MG F2 MF4 sing 315 n n MG F3 MF4 sing 316 n n MG F4 MF4 sing 317 n n # _atom_sites.entry_id 5AW9 _atom_sites.fract_transf_matrix[1][1] 0.004546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001176 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MF4 A 1 2001 2001 MF4 MF4 . F 6 MG A 1 2002 2002 MG MG . G 7 K A 1 2003 2003 K K . H 7 K A 1 2004 2004 K K . I 7 K A 1 2005 2005 K K . J 8 CLR B 1 3001 3001 CLR CLR . K 9 NAG B 1 4021 4021 NAG NAG . L 10 HOH A 1 2101 2101 HOH HOH . L 10 HOH A 2 2102 2102 HOH HOH . L 10 HOH A 3 2103 2103 HOH HOH . L 10 HOH A 4 2104 2104 HOH HOH . L 10 HOH A 5 2105 2105 HOH HOH . L 10 HOH A 6 2106 2106 HOH HOH . L 10 HOH A 7 2107 2107 HOH HOH . L 10 HOH A 8 2108 2108 HOH HOH . L 10 HOH A 9 2109 2109 HOH HOH . L 10 HOH A 10 2110 2110 HOH HOH . L 10 HOH A 11 2111 2111 HOH HOH . L 10 HOH A 12 2112 2112 HOH HOH . L 10 HOH A 13 2113 2113 HOH HOH . L 10 HOH A 14 2114 2114 HOH HOH . L 10 HOH A 15 2115 2115 HOH HOH . L 10 HOH A 16 2116 2116 HOH HOH . L 10 HOH A 17 2117 2117 HOH HOH . L 10 HOH A 18 2118 2118 HOH HOH . L 10 HOH A 19 2119 2119 HOH HOH . L 10 HOH A 20 2120 2120 HOH HOH . L 10 HOH A 21 2121 2121 HOH HOH . L 10 HOH A 22 2122 2122 HOH HOH . L 10 HOH A 23 2123 2123 HOH HOH . L 10 HOH A 24 2124 2124 HOH HOH . L 10 HOH A 25 2125 2125 HOH HOH . L 10 HOH A 26 2126 2126 HOH HOH . L 10 HOH A 27 2127 2127 HOH HOH . L 10 HOH A 28 2128 2128 HOH HOH . L 10 HOH A 29 2129 2129 HOH HOH . L 10 HOH A 30 2130 2130 HOH HOH . L 10 HOH A 31 2131 2131 HOH HOH . L 10 HOH A 32 2132 2132 HOH HOH . L 10 HOH A 33 2133 2133 HOH HOH . L 10 HOH A 34 2134 2134 HOH HOH . L 10 HOH A 35 2135 2135 HOH HOH . L 10 HOH A 36 2136 2136 HOH HOH . L 10 HOH A 37 2137 2137 HOH HOH . L 10 HOH A 38 2138 2138 HOH HOH . L 10 HOH A 39 2139 2139 HOH HOH . L 10 HOH A 40 2140 2140 HOH HOH . L 10 HOH A 41 2141 2141 HOH HOH . L 10 HOH A 42 2142 2142 HOH HOH . L 10 HOH A 43 2143 2143 HOH HOH . L 10 HOH A 44 2144 2144 HOH HOH . L 10 HOH A 45 2145 2145 HOH HOH . L 10 HOH A 46 2146 2146 HOH HOH . L 10 HOH A 47 2147 2147 HOH HOH . L 10 HOH A 48 2148 2148 HOH HOH . L 10 HOH A 49 2149 2149 HOH HOH . L 10 HOH A 50 2150 2150 HOH HOH . L 10 HOH A 51 2151 2151 HOH HOH . L 10 HOH A 52 2152 2152 HOH HOH . L 10 HOH A 53 2153 2153 HOH HOH . L 10 HOH A 54 2154 2154 HOH HOH . L 10 HOH A 55 2155 2155 HOH HOH . L 10 HOH A 56 2156 2156 HOH HOH . L 10 HOH A 57 2157 2157 HOH HOH . L 10 HOH A 58 2158 2158 HOH HOH . L 10 HOH A 59 2159 2159 HOH HOH . L 10 HOH A 60 2160 2160 HOH HOH . L 10 HOH A 61 2161 2161 HOH HOH . L 10 HOH A 62 2162 2162 HOH HOH . L 10 HOH A 63 2163 2163 HOH HOH . L 10 HOH A 64 2164 2164 HOH HOH . L 10 HOH A 65 2165 2165 HOH HOH . L 10 HOH A 66 2166 2166 HOH HOH . L 10 HOH A 67 2167 2167 HOH HOH . L 10 HOH A 68 2168 2168 HOH HOH . L 10 HOH A 69 2169 2169 HOH HOH . L 10 HOH A 70 2170 2170 HOH HOH . L 10 HOH A 71 2171 2171 HOH HOH . L 10 HOH A 72 2172 2172 HOH HOH . L 10 HOH A 73 2173 2173 HOH HOH . L 10 HOH A 74 2174 2174 HOH HOH . L 10 HOH A 75 2175 2175 HOH HOH . L 10 HOH A 76 2176 2176 HOH HOH . L 10 HOH A 77 2177 2177 HOH HOH . L 10 HOH A 78 2178 2178 HOH HOH . L 10 HOH A 79 2179 2179 HOH HOH . L 10 HOH A 80 2180 2180 HOH HOH . L 10 HOH A 81 2181 2181 HOH HOH . L 10 HOH A 82 2182 2182 HOH HOH . L 10 HOH A 83 2183 2183 HOH HOH . L 10 HOH A 84 2184 2184 HOH HOH . L 10 HOH A 85 2185 2185 HOH HOH . L 10 HOH A 86 2186 2186 HOH HOH . L 10 HOH A 87 2187 2187 HOH HOH . L 10 HOH A 88 2188 2188 HOH HOH . L 10 HOH A 89 2189 2189 HOH HOH . L 10 HOH A 90 2190 2190 HOH HOH . L 10 HOH A 91 2191 2191 HOH HOH . L 10 HOH A 92 2192 2192 HOH HOH . L 10 HOH A 93 2193 2193 HOH HOH . L 10 HOH A 94 2194 2194 HOH HOH . L 10 HOH A 95 2195 2195 HOH HOH . L 10 HOH A 96 2196 2196 HOH HOH . L 10 HOH A 97 2197 2197 HOH HOH . L 10 HOH A 98 2198 2198 HOH HOH . L 10 HOH A 99 2199 2199 HOH HOH . L 10 HOH A 100 2200 2200 HOH HOH . L 10 HOH A 101 2201 2201 HOH HOH . L 10 HOH A 102 2202 2202 HOH HOH . L 10 HOH A 103 2203 2203 HOH HOH . L 10 HOH A 104 2204 2204 HOH HOH . L 10 HOH A 105 2205 2205 HOH HOH . L 10 HOH A 106 2206 2206 HOH HOH . L 10 HOH A 107 2207 2207 HOH HOH . L 10 HOH A 108 2208 2208 HOH HOH . L 10 HOH A 109 2209 2209 HOH HOH . L 10 HOH A 110 2210 2210 HOH HOH . L 10 HOH A 111 2211 2211 HOH HOH . L 10 HOH A 112 2212 2212 HOH HOH . L 10 HOH A 113 2213 2213 HOH HOH . L 10 HOH A 114 2214 2214 HOH HOH . L 10 HOH A 115 2215 2215 HOH HOH . L 10 HOH A 116 2216 2216 HOH HOH . L 10 HOH A 117 2217 2217 HOH HOH . L 10 HOH A 118 2218 2218 HOH HOH . L 10 HOH A 119 2219 2219 HOH HOH . L 10 HOH A 120 2220 2220 HOH HOH . L 10 HOH A 121 2221 2221 HOH HOH . L 10 HOH A 122 2222 2222 HOH HOH . L 10 HOH A 123 2223 2223 HOH HOH . L 10 HOH A 124 2224 2224 HOH HOH . L 10 HOH A 125 2225 2225 HOH HOH . L 10 HOH A 126 2226 2226 HOH HOH . L 10 HOH A 127 2227 2227 HOH HOH . L 10 HOH A 128 2228 2228 HOH HOH . L 10 HOH A 129 2229 2229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG MF4 . . . E 5 130.646 29.088 59.565 1 48.56 ? MG MF4 2001 A 1 HETATM 2 F F1 MF4 . . . E 5 132.402 28.428 58.831 1 49.18 ? F1 MF4 2001 A 1 HETATM 3 F F2 MF4 . . . E 5 130.15 30.654 58.434 1 50.07 ? F2 MF4 2001 A 1 HETATM 4 F F3 MF4 . . . E 5 130.677 29.426 61.505 1 55.41 ? F3 MF4 2001 A 1 HETATM 5 F F4 MF4 . . . E 5 129.25 27.734 59.132 1 48.5 ? F4 MF4 2001 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #