data_5AWK
#
_model_server_result.job_id            DlgxtobbxfmsedN0w9fdHg 
_model_server_result.datetime_utc      '2025-04-28 09:50:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5awk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
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_entry.id    5AWK 
#
_exptl.entry_id    5AWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.61 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3S)-3-ethyl-5-oxidanyl-pentan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.96 
_cell.angle_gamma         90 
_cell.entry_id            5AWK 
_cell.length_a            154.03 
_cell.length_b            41.97 
_cell.length_c            41.86 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H42 O3' 
_chem_comp.formula_weight    402.61 
_chem_comp.id                YSE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,3S)-3-ethyl-5-oxidanyl-pentan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C2 YSE doub 376 n n 
C2 C1 YSE sing 377 n n 
C2 C3 YSE sing 378 n n 
O C3 YSE sing 379 n n 
C1 O1 YSE sing 380 n n 
C1 C YSE sing 381 n n 
C3 C4 YSE sing 382 n n 
C C5 YSE sing 383 n n 
C4 C5 YSE sing 384 n n 
C5 C6 YSE doub 385 n n 
C6 C7 YSE sing 386 n n 
C7 C8 YSE doub 387 e n 
C8 C14 YSE sing 388 n n 
C8 C10 YSE sing 389 n n 
C15 C10 YSE sing 390 n n 
C15 C16 YSE sing 391 n n 
C18 C11 YSE sing 392 n n 
C14 C13 YSE sing 393 n n 
C10 C11 YSE sing 394 n n 
C16 C17 YSE sing 395 n n 
C11 C17 YSE sing 396 n n 
C11 C12 YSE sing 397 n n 
C13 C12 YSE sing 398 n n 
C17 C19 YSE sing 399 n n 
C23 O2 YSE sing 400 n n 
C23 C22 YSE sing 401 n n 
C19 C21 YSE sing 402 n n 
C19 C20 YSE sing 403 n n 
C21 C22 YSE sing 404 n n 
C21 C24 YSE sing 405 n n 
C24 C25 YSE sing 406 n n 
O2 H1 YSE sing 407 n n 
C23 H2 YSE sing 408 n n 
C23 H3 YSE sing 409 n n 
C22 H4 YSE sing 410 n n 
C22 H5 YSE sing 411 n n 
C21 H6 YSE sing 412 n n 
C24 H7 YSE sing 413 n n 
C24 H8 YSE sing 414 n n 
C25 H9 YSE sing 415 n n 
C25 H10 YSE sing 416 n n 
C25 H11 YSE sing 417 n n 
C19 H12 YSE sing 418 n n 
C20 H13 YSE sing 419 n n 
C20 H14 YSE sing 420 n n 
C20 H15 YSE sing 421 n n 
C17 H16 YSE sing 422 n n 
C16 H17 YSE sing 423 n n 
C16 H18 YSE sing 424 n n 
C15 H19 YSE sing 425 n n 
C15 H20 YSE sing 426 n n 
C10 H21 YSE sing 427 n n 
C18 H22 YSE sing 428 n n 
C18 H23 YSE sing 429 n n 
C18 H24 YSE sing 430 n n 
C12 H25 YSE sing 431 n n 
C12 H26 YSE sing 432 n n 
C13 H27 YSE sing 433 n n 
C13 H28 YSE sing 434 n n 
C14 H29 YSE sing 435 n n 
C14 H30 YSE sing 436 n n 
C7 H31 YSE sing 437 n n 
C6 H32 YSE sing 438 n n 
C H33 YSE sing 439 n n 
C H34 YSE sing 440 n n 
C4 H35 YSE sing 441 n n 
C4 H36 YSE sing 442 n n 
C3 H37 YSE sing 443 n n 
O H38 YSE sing 444 n n 
C9 H39 YSE sing 445 n n 
C9 H40 YSE sing 446 n n 
C1 H41 YSE sing 447 n n 
O1 H42 YSE sing 448 n n 
#
_atom_sites.entry_id                     5AWK 
_atom_sites.fract_transf_matrix[1][1]    0.006492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000678 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023827 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 YSE A 1 501 1 YSE YSE . 
D 4 HOH A 1 601 36 HOH HOH . 
D 4 HOH A 2 602 5 HOH HOH . 
D 4 HOH A 3 603 35 HOH HOH . 
D 4 HOH A 4 604 34 HOH HOH . 
D 4 HOH A 5 605 37 HOH HOH . 
D 4 HOH A 6 606 38 HOH HOH . 
D 4 HOH A 7 607 19 HOH HOH . 
D 4 HOH A 8 608 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 YSE . . . C 3 9.669 -1.234 27.169 1 73.78 ? O2 YSE 501 A 1 
HETATM 2 C C23 YSE . . . C 3 10.945 -0.606 27.008 1 71.38 ? C23 YSE 501 A 1 
HETATM 3 C C22 YSE . . . C 3 11.063 0.559 27.983 1 68.29 ? C22 YSE 501 A 1 
HETATM 4 C C21 YSE . . . C 3 12.364 1.321 27.774 1 65.71 ? C21 YSE 501 A 1 
HETATM 5 C C24 YSE . . . C 3 13.045 1.536 29.12 1 69.19 ? C24 YSE 501 A 1 
HETATM 6 C C25 YSE . . . C 3 14.067 0.455 29.39 1 73.69 ? C25 YSE 501 A 1 
HETATM 7 C C19 YSE . . . C 3 12.101 2.653 27.085 1 61.57 ? C19 YSE 501 A 1 
HETATM 8 C C20 YSE . . . C 3 11.148 3.506 27.91 1 62.77 ? C20 YSE 501 A 1 
HETATM 9 C C17 YSE . . . C 3 13.404 3.399 26.813 1 60.62 ? C17 YSE 501 A 1 
HETATM 10 C C16 YSE . . . C 3 14.284 2.678 25.787 1 61.27 ? C16 YSE 501 A 1 
HETATM 11 C C15 YSE . . . C 3 14.918 3.753 24.899 1 60.75 ? C15 YSE 501 A 1 
HETATM 12 C C10 YSE . . . C 3 14.546 5.052 25.593 1 59.73 ? C10 YSE 501 A 1 
HETATM 13 C C11 YSE . . . C 3 13.2 4.791 26.226 1 58.77 ? C11 YSE 501 A 1 
HETATM 14 C C18 YSE . . . C 3 12.091 4.773 25.175 1 56.27 ? C18 YSE 501 A 1 
HETATM 15 C C12 YSE . . . C 3 12.962 5.918 27.215 1 61.72 ? C12 YSE 501 A 1 
HETATM 16 C C13 YSE . . . C 3 12.806 7.229 26.443 1 61.78 ? C13 YSE 501 A 1 
HETATM 17 C C14 YSE . . . C 3 13.941 7.54 25.459 1 60.83 ? C14 YSE 501 A 1 
HETATM 18 C C8 YSE . . . C 3 14.469 6.298 24.773 1 58.81 ? C8 YSE 501 A 1 
HETATM 19 C C7 YSE . . . C 3 14.849 6.317 23.488 1 59.01 ? C7 YSE 501 A 1 
HETATM 20 C C6 YSE . . . C 3 14.758 7.557 22.723 1 59.96 ? C6 YSE 501 A 1 
HETATM 21 C C5 YSE . . . C 3 14.315 7.55 21.46 1 58.7 ? C5 YSE 501 A 1 
HETATM 22 C C YSE . . . C 3 14.223 8.845 20.683 1 60.97 ? C YSE 501 A 1 
HETATM 23 C C4 YSE . . . C 3 13.894 6.256 20.798 1 59.27 ? C4 YSE 501 A 1 
HETATM 24 C C3 YSE . . . C 3 14.396 6.145 19.356 1 62.83 ? C3 YSE 501 A 1 
HETATM 25 O O YSE . . . C 3 13.679 5.101 18.688 1 64.62 ? O YSE 501 A 1 
HETATM 26 C C2 YSE . . . C 3 14.24 7.443 18.613 1 63.5 ? C2 YSE 501 A 1 
HETATM 27 C C9 YSE . . . C 3 13.667 7.492 17.425 1 65.46 ? C9 YSE 501 A 1 
HETATM 28 C C1 YSE . . . C 3 14.753 8.698 19.257 1 64.28 ? C1 YSE 501 A 1 
HETATM 29 O O1 YSE . . . C 3 16.183 8.674 19.277 1 69.9 ? O1 YSE 501 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#