data_5AWM # _model_server_result.job_id 78gczLQANg-4AlTUHVChrA _model_server_result.datetime_utc '2024-10-28 11:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5awm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5AWM # _exptl.entry_id 5AWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5AWM _cell.length_a 52.486 _cell.length_b 55.329 _cell.length_c 126.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 176 A ASN 154 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 B O2G ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 B O1B ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 B O1A ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 B O3G ANP . A ANP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 C MG MG . A MG 402 1_555 E O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc8 D MG MG . A MG 403 1_555 E O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc9 D MG MG . A MG 403 1_555 E O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc10 D MG MG . A MG 403 1_555 E O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5AWM _atom_sites.fract_transf_matrix[1][1] 0.019053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 MG A 1 402 501 MG MG . D 3 MG A 1 403 502 MG MG . E 4 HOH A 1 501 734 HOH HOH . E 4 HOH A 2 502 624 HOH HOH . E 4 HOH A 3 503 676 HOH HOH . E 4 HOH A 4 504 694 HOH HOH . E 4 HOH A 5 505 680 HOH HOH . E 4 HOH A 6 506 698 HOH HOH . E 4 HOH A 7 507 726 HOH HOH . E 4 HOH A 8 508 675 HOH HOH . E 4 HOH A 9 509 671 HOH HOH . E 4 HOH A 10 510 716 HOH HOH . E 4 HOH A 11 511 620 HOH HOH . E 4 HOH A 12 512 695 HOH HOH . E 4 HOH A 13 513 623 HOH HOH . E 4 HOH A 14 514 701 HOH HOH . E 4 HOH A 15 515 707 HOH HOH . E 4 HOH A 16 516 684 HOH HOH . E 4 HOH A 17 517 667 HOH HOH . E 4 HOH A 18 518 724 HOH HOH . E 4 HOH A 19 519 723 HOH HOH . E 4 HOH A 20 520 643 HOH HOH . E 4 HOH A 21 521 700 HOH HOH . E 4 HOH A 22 522 738 HOH HOH . E 4 HOH A 23 523 657 HOH HOH . E 4 HOH A 24 524 653 HOH HOH . E 4 HOH A 25 525 607 HOH HOH . E 4 HOH A 26 526 713 HOH HOH . E 4 HOH A 27 527 617 HOH HOH . E 4 HOH A 28 528 728 HOH HOH . E 4 HOH A 29 529 619 HOH HOH . E 4 HOH A 30 530 614 HOH HOH . E 4 HOH A 31 531 628 HOH HOH . E 4 HOH A 32 532 673 HOH HOH . E 4 HOH A 33 533 655 HOH HOH . E 4 HOH A 34 534 678 HOH HOH . E 4 HOH A 35 535 622 HOH HOH . E 4 HOH A 36 536 631 HOH HOH . E 4 HOH A 37 537 714 HOH HOH . E 4 HOH A 38 538 651 HOH HOH . E 4 HOH A 39 539 741 HOH HOH . E 4 HOH A 40 540 665 HOH HOH . E 4 HOH A 41 541 683 HOH HOH . E 4 HOH A 42 542 644 HOH HOH . E 4 HOH A 43 543 638 HOH HOH . E 4 HOH A 44 544 632 HOH HOH . E 4 HOH A 45 545 715 HOH HOH . E 4 HOH A 46 546 737 HOH HOH . E 4 HOH A 47 547 626 HOH HOH . E 4 HOH A 48 548 640 HOH HOH . E 4 HOH A 49 549 652 HOH HOH . E 4 HOH A 50 550 719 HOH HOH . E 4 HOH A 51 551 725 HOH HOH . E 4 HOH A 52 552 602 HOH HOH . E 4 HOH A 53 553 689 HOH HOH . E 4 HOH A 54 554 731 HOH HOH . E 4 HOH A 55 555 629 HOH HOH . E 4 HOH A 56 556 616 HOH HOH . E 4 HOH A 57 557 642 HOH HOH . E 4 HOH A 58 558 611 HOH HOH . E 4 HOH A 59 559 720 HOH HOH . E 4 HOH A 60 560 608 HOH HOH . E 4 HOH A 61 561 739 HOH HOH . E 4 HOH A 62 562 710 HOH HOH . E 4 HOH A 63 563 674 HOH HOH . E 4 HOH A 64 564 618 HOH HOH . E 4 HOH A 65 565 733 HOH HOH . E 4 HOH A 66 566 693 HOH HOH . E 4 HOH A 67 567 670 HOH HOH . E 4 HOH A 68 568 633 HOH HOH . E 4 HOH A 69 569 704 HOH HOH . E 4 HOH A 70 570 735 HOH HOH . E 4 HOH A 71 571 717 HOH HOH . E 4 HOH A 72 572 729 HOH HOH . E 4 HOH A 73 573 682 HOH HOH . E 4 HOH A 74 574 634 HOH HOH . E 4 HOH A 75 575 647 HOH HOH . E 4 HOH A 76 576 609 HOH HOH . E 4 HOH A 77 577 688 HOH HOH . E 4 HOH A 78 578 659 HOH HOH . E 4 HOH A 79 579 649 HOH HOH . E 4 HOH A 80 580 605 HOH HOH . E 4 HOH A 81 581 687 HOH HOH . E 4 HOH A 82 582 663 HOH HOH . E 4 HOH A 83 583 610 HOH HOH . E 4 HOH A 84 584 645 HOH HOH . E 4 HOH A 85 585 650 HOH HOH . E 4 HOH A 86 586 654 HOH HOH . E 4 HOH A 87 587 635 HOH HOH . E 4 HOH A 88 588 621 HOH HOH . E 4 HOH A 89 589 732 HOH HOH . E 4 HOH A 90 590 691 HOH HOH . E 4 HOH A 91 591 606 HOH HOH . E 4 HOH A 92 592 639 HOH HOH . E 4 HOH A 93 593 660 HOH HOH . E 4 HOH A 94 594 612 HOH HOH . E 4 HOH A 95 595 664 HOH HOH . E 4 HOH A 96 596 712 HOH HOH . E 4 HOH A 97 597 740 HOH HOH . E 4 HOH A 98 598 690 HOH HOH . E 4 HOH A 99 599 705 HOH HOH . E 4 HOH A 100 600 604 HOH HOH . E 4 HOH A 101 601 742 HOH HOH . E 4 HOH A 102 602 703 HOH HOH . E 4 HOH A 103 603 692 HOH HOH . E 4 HOH A 104 604 630 HOH HOH . E 4 HOH A 105 605 743 HOH HOH . E 4 HOH A 106 606 661 HOH HOH . E 4 HOH A 107 607 646 HOH HOH . E 4 HOH A 108 608 708 HOH HOH . E 4 HOH A 109 609 696 HOH HOH . E 4 HOH A 110 610 636 HOH HOH . E 4 HOH A 111 611 615 HOH HOH . E 4 HOH A 112 612 648 HOH HOH . E 4 HOH A 113 613 672 HOH HOH . E 4 HOH A 114 614 601 HOH HOH . E 4 HOH A 115 615 662 HOH HOH . E 4 HOH A 116 616 637 HOH HOH . E 4 HOH A 117 617 736 HOH HOH . E 4 HOH A 118 618 677 HOH HOH . E 4 HOH A 119 619 613 HOH HOH . E 4 HOH A 120 620 669 HOH HOH . E 4 HOH A 121 621 666 HOH HOH . E 4 HOH A 122 622 697 HOH HOH . E 4 HOH A 123 623 656 HOH HOH . E 4 HOH A 124 624 727 HOH HOH . E 4 HOH A 125 625 699 HOH HOH . E 4 HOH A 126 626 730 HOH HOH . E 4 HOH A 127 627 627 HOH HOH . E 4 HOH A 128 628 686 HOH HOH . E 4 HOH A 129 629 603 HOH HOH . E 4 HOH A 130 630 641 HOH HOH . E 4 HOH A 131 631 625 HOH HOH . E 4 HOH A 132 632 679 HOH HOH . E 4 HOH A 133 633 702 HOH HOH . E 4 HOH A 134 634 668 HOH HOH . E 4 HOH A 135 635 658 HOH HOH . E 4 HOH A 136 636 706 HOH HOH . E 4 HOH A 137 637 685 HOH HOH . E 4 HOH A 138 638 709 HOH HOH . E 4 HOH A 139 639 711 HOH HOH . E 4 HOH A 140 640 721 HOH HOH . E 4 HOH A 141 641 722 HOH HOH . E 4 HOH A 142 642 681 HOH HOH . E 4 HOH A 143 643 718 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -12.2 -5.803 13.665 1 25.18 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 -12.98 -6.586 12.634 1 23.4 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 -11.621 -4.443 13.236 1 21.73 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 -11.324 -6.603 14.547 1 21.52 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 -14.104 -4.018 15.092 1 19.96 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 -14.041 -3.064 13.924 1 17.55 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 -15.467 -4.207 15.725 1 20.06 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 -13.425 -5.513 14.826 1 20.42 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 -11.956 -2.41 16.245 1 18.55 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 -11.562 -2.029 14.855 1 22.62 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 -10.784 -2.997 17.086 1 20.31 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 -13.234 -3.371 16.271 1 16.86 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 -12.419 -1.057 16.895 1 19.69 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 -13.635 -0.364 16.546 1 17.54 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 -13.418 1.121 16.668 1 16.77 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 -13.242 1.409 18.089 1 15.57 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 -12.139 1.684 15.98 1 14.73 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 -12.418 1.96 14.591 1 16.54 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 -11.853 2.853 16.888 1 15.93 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 -12.696 4.001 16.525 1 18.01 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 -12.225 2.362 18.315 1 15.13 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 -11.12 1.774 19.032 1 13.36 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 -10.718 0.514 19.116 1 12.06 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 -9.636 0.412 19.869 1 15.1 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 -9.37 1.659 20.31 1 13.98 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 -8.312 2.241 21.153 1 15.5 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 -7.363 1.494 21.691 1 16.1 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 -8.338 3.557 21.334 1 15.48 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 -9.332 4.328 20.785 1 15.88 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 -10.318 3.879 19.97 1 14.67 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 -10.321 2.547 19.736 1 13.87 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #