data_5AWZ # _model_server_result.job_id LXHooFGIgJo5MHc92_3TvQ _model_server_result.datetime_utc '2024-11-22 21:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5awz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5AWZ # _exptl.entry_id 5AWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.17 _cell.angle_gamma 90 _cell.entry_id 5AWZ _cell.length_a 75.99 _cell.length_b 101.63 _cell.length_c 43.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.267 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 126 n n C1 H11 D10 sing 127 n n C1 H12 D10 sing 128 n n C1 H13 D10 sing 129 n n C2 C3 D10 sing 130 n n C2 H21 D10 sing 131 n n C2 H22 D10 sing 132 n n C3 C4 D10 sing 133 n n C3 H31 D10 sing 134 n n C3 H32 D10 sing 135 n n C4 C5 D10 sing 136 n n C4 H41 D10 sing 137 n n C4 H42 D10 sing 138 n n C5 C6 D10 sing 139 n n C5 H51 D10 sing 140 n n C5 H52 D10 sing 141 n n C6 C7 D10 sing 142 n n C6 H61 D10 sing 143 n n C6 H62 D10 sing 144 n n C7 C8 D10 sing 145 n n C7 H71 D10 sing 146 n n C7 H72 D10 sing 147 n n C8 C9 D10 sing 148 n n C8 H81 D10 sing 149 n n C8 H82 D10 sing 150 n n C9 C10 D10 sing 151 n n C9 H91 D10 sing 152 n n C9 H92 D10 sing 153 n n C10 H101 D10 sing 154 n n C10 H102 D10 sing 155 n n C10 H103 D10 sing 156 n n # _atom_sites.entry_id 5AWZ _atom_sites.fract_transf_matrix[1][1] 0.01316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 OLB A 1 302 1 OLB OLC . D 4 D12 A 1 303 1 D12 D12 . E 4 D12 A 1 304 2 D12 D12 . F 5 D10 A 1 305 1 D10 D10 . G 5 D10 A 1 306 2 D10 D10 . H 5 D10 A 1 307 3 D10 D10 . I 6 OCT A 1 308 1 OCT OCT . J 6 OCT A 1 309 2 OCT OCT . K 7 C14 A 1 310 1 C14 C14 . L 8 HOH A 1 401 410 HOH HOH . L 8 HOH A 2 402 409 HOH HOH . L 8 HOH A 3 403 523 HOH HOH . L 8 HOH A 4 404 534 HOH HOH . L 8 HOH A 5 405 450 HOH HOH . L 8 HOH A 6 406 447 HOH HOH . L 8 HOH A 7 407 527 HOH HOH . L 8 HOH A 8 408 446 HOH HOH . L 8 HOH A 9 409 519 HOH HOH . L 8 HOH A 10 410 403 HOH HOH . L 8 HOH A 11 411 441 HOH HOH . L 8 HOH A 12 412 402 HOH HOH . L 8 HOH A 13 413 504 HOH HOH . L 8 HOH A 14 414 404 HOH HOH . L 8 HOH A 15 415 515 HOH HOH . L 8 HOH A 16 416 444 HOH HOH . L 8 HOH A 17 417 425 HOH HOH . L 8 HOH A 18 418 420 HOH HOH . L 8 HOH A 19 419 454 HOH HOH . L 8 HOH A 20 420 401 HOH HOH . L 8 HOH A 21 421 440 HOH HOH . L 8 HOH A 22 422 507 HOH HOH . L 8 HOH A 23 423 414 HOH HOH . L 8 HOH A 24 424 419 HOH HOH . L 8 HOH A 25 425 433 HOH HOH . L 8 HOH A 26 426 424 HOH HOH . L 8 HOH A 27 427 456 HOH HOH . L 8 HOH A 28 428 457 HOH HOH . L 8 HOH A 29 429 511 HOH HOH . L 8 HOH A 30 430 412 HOH HOH . L 8 HOH A 31 431 429 HOH HOH . L 8 HOH A 32 432 428 HOH HOH . L 8 HOH A 33 433 518 HOH HOH . L 8 HOH A 34 434 432 HOH HOH . L 8 HOH A 35 435 517 HOH HOH . L 8 HOH A 36 436 431 HOH HOH . L 8 HOH A 37 437 418 HOH HOH . L 8 HOH A 38 438 427 HOH HOH . L 8 HOH A 39 439 422 HOH HOH . L 8 HOH A 40 440 407 HOH HOH . L 8 HOH A 41 441 528 HOH HOH . L 8 HOH A 42 442 449 HOH HOH . L 8 HOH A 43 443 501 HOH HOH . L 8 HOH A 44 444 526 HOH HOH . L 8 HOH A 45 445 455 HOH HOH . L 8 HOH A 46 446 533 HOH HOH . L 8 HOH A 47 447 405 HOH HOH . L 8 HOH A 48 448 413 HOH HOH . L 8 HOH A 49 449 524 HOH HOH . L 8 HOH A 50 450 453 HOH HOH . L 8 HOH A 51 451 438 HOH HOH . L 8 HOH A 52 452 505 HOH HOH . L 8 HOH A 53 453 416 HOH HOH . L 8 HOH A 54 454 415 HOH HOH . L 8 HOH A 55 455 436 HOH HOH . L 8 HOH A 56 456 434 HOH HOH . L 8 HOH A 57 457 506 HOH HOH . L 8 HOH A 58 458 448 HOH HOH . L 8 HOH A 59 459 514 HOH HOH . L 8 HOH A 60 460 408 HOH HOH . L 8 HOH A 61 461 451 HOH HOH . L 8 HOH A 62 462 442 HOH HOH . L 8 HOH A 63 463 435 HOH HOH . L 8 HOH A 64 464 445 HOH HOH . L 8 HOH A 65 465 520 HOH HOH . L 8 HOH A 66 466 439 HOH HOH . L 8 HOH A 67 467 423 HOH HOH . L 8 HOH A 68 468 532 HOH HOH . L 8 HOH A 69 469 417 HOH HOH . L 8 HOH A 70 470 513 HOH HOH . L 8 HOH A 71 471 430 HOH HOH . L 8 HOH A 72 472 510 HOH HOH . L 8 HOH A 73 473 503 HOH HOH . L 8 HOH A 74 474 509 HOH HOH . L 8 HOH A 75 475 406 HOH HOH . L 8 HOH A 76 476 437 HOH HOH . L 8 HOH A 77 477 512 HOH HOH . L 8 HOH A 78 478 522 HOH HOH . L 8 HOH A 79 479 443 HOH HOH . L 8 HOH A 80 480 530 HOH HOH . L 8 HOH A 81 481 529 HOH HOH . L 8 HOH A 82 482 525 HOH HOH . L 8 HOH A 83 483 458 HOH HOH . L 8 HOH A 84 484 531 HOH HOH . L 8 HOH A 85 485 521 HOH HOH . L 8 HOH A 86 486 508 HOH HOH . L 8 HOH A 87 487 535 HOH HOH . L 8 HOH A 88 488 426 HOH HOH . L 8 HOH A 89 489 516 HOH HOH . L 8 HOH A 90 490 411 HOH HOH . L 8 HOH A 91 491 421 HOH HOH . L 8 HOH A 92 492 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . G 5 18.624 33.824 2.077 1 47.91 ? C1 D10 306 A 1 HETATM 2 C C2 D10 . . . G 5 18.501 34.634 0.806 1 48.71 ? C2 D10 306 A 1 HETATM 3 C C3 D10 . . . G 5 17.422 35.683 0.952 1 44.62 ? C3 D10 306 A 1 HETATM 4 C C4 D10 . . . G 5 18.07 37.037 1.132 1 44.12 ? C4 D10 306 A 1 HETATM 5 C C5 D10 . . . G 5 17.187 38.117 0.545 1 41.37 ? C5 D10 306 A 1 HETATM 6 C C6 D10 . . . G 5 17.914 39.44 0.638 1 43.53 ? C6 D10 306 A 1 HETATM 7 C C7 D10 . . . G 5 16.935 40.593 0.588 1 44.32 ? C7 D10 306 A 1 HETATM 8 C C8 D10 . . . G 5 17.661 41.872 0.95 1 44.35 ? C8 D10 306 A 1 HETATM 9 C C9 D10 . . . G 5 17.752 42.772 -0.264 1 46.03 ? C9 D10 306 A 1 HETATM 10 C C10 D10 . . . G 5 16.687 43.843 -0.186 1 47.8 ? C10 D10 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #