data_5AX0
#
_model_server_result.job_id            XNjhcDwfSWo24Ug5d2Zpig 
_model_server_result.datetime_utc      '2024-11-23 02:45:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ax0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5AX0 
#
_exptl.entry_id    5AX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.17 
_cell.angle_gamma         90 
_cell.entry_id            5AX0 
_cell.length_a            75.99 
_cell.length_b            101.63 
_cell.length_c            43.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             225 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              218 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.273 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 501 n n 
C1 C6 RET sing 502 n n 
C1 C16 RET sing 503 n n 
C1 C17 RET sing 504 n n 
C2 C3 RET sing 505 n n 
C2 H21 RET sing 506 n n 
C2 H22 RET sing 507 n n 
C3 C4 RET sing 508 n n 
C3 H31 RET sing 509 n n 
C3 H32 RET sing 510 n n 
C4 C5 RET sing 511 n n 
C4 H41 RET sing 512 n n 
C4 H42 RET sing 513 n n 
C5 C6 RET doub 514 n n 
C5 C18 RET sing 515 n n 
C6 C7 RET sing 516 n n 
C7 C8 RET doub 517 e n 
C7 H7 RET sing 518 n n 
C8 C9 RET sing 519 n n 
C8 H8 RET sing 520 n n 
C9 C10 RET doub 521 e n 
C9 C19 RET sing 522 n n 
C10 C11 RET sing 523 n n 
C10 H10 RET sing 524 n n 
C11 C12 RET doub 525 e n 
C11 H11 RET sing 526 n n 
C12 C13 RET sing 527 n n 
C12 H12 RET sing 528 n n 
C13 C14 RET doub 529 e n 
C13 C20 RET sing 530 n n 
C14 C15 RET sing 531 n n 
C14 H14 RET sing 532 n n 
C15 O1 RET doub 533 n n 
C15 H15 RET sing 534 n n 
C16 H161 RET sing 535 n n 
C16 H162 RET sing 536 n n 
C16 H163 RET sing 537 n n 
C17 H171 RET sing 538 n n 
C17 H172 RET sing 539 n n 
C17 H173 RET sing 540 n n 
C18 H181 RET sing 541 n n 
C18 H182 RET sing 542 n n 
C18 H183 RET sing 543 n n 
C19 H191 RET sing 544 n n 
C19 H192 RET sing 545 n n 
C19 H193 RET sing 546 n n 
C20 H201 RET sing 547 n n 
C20 H202 RET sing 548 n n 
C20 H203 RET sing 549 n n 
#
_atom_sites.entry_id                     5AX0 
_atom_sites.fract_transf_matrix[1][1]    0.01316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007346 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 1 RET RET . 
C 3 OLB A 1 302 1 OLB OLC . 
D 3 OLB A 1 303 2 OLB OLC . 
E 3 OLB A 1 304 3 OLB OLC . 
F 4 D12 A 1 305 1 D12 D12 . 
G 4 D12 A 1 306 2 D12 D12 . 
H 5 C14 A 1 307 1 C14 C14 . 
I 6 R16 A 1 308 1 R16 R16 . 
J 7 D10 A 1 309 1 D10 D10 . 
K 7 D10 A 1 310 2 D10 D10 . 
L 8 HOH A 1 401 527 HOH HOH . 
L 8 HOH A 2 402 410 HOH HOH . 
L 8 HOH A 3 403 409 HOH HOH . 
L 8 HOH A 4 404 515 HOH HOH . 
L 8 HOH A 5 405 450 HOH HOH . 
L 8 HOH A 6 406 403 HOH HOH . 
L 8 HOH A 7 407 419 HOH HOH . 
L 8 HOH A 8 408 523 HOH HOH . 
L 8 HOH A 9 409 404 HOH HOH . 
L 8 HOH A 10 410 446 HOH HOH . 
L 8 HOH A 11 411 415 HOH HOH . 
L 8 HOH A 12 412 444 HOH HOH . 
L 8 HOH A 13 413 433 HOH HOH . 
L 8 HOH A 14 414 440 HOH HOH . 
L 8 HOH A 15 415 451 HOH HOH . 
L 8 HOH A 16 416 418 HOH HOH . 
L 8 HOH A 17 417 402 HOH HOH . 
L 8 HOH A 18 418 428 HOH HOH . 
L 8 HOH A 19 419 401 HOH HOH . 
L 8 HOH A 20 420 459 HOH HOH . 
L 8 HOH A 21 421 507 HOH HOH . 
L 8 HOH A 22 422 420 HOH HOH . 
L 8 HOH A 23 423 538 HOH HOH . 
L 8 HOH A 24 424 425 HOH HOH . 
L 8 HOH A 25 425 414 HOH HOH . 
L 8 HOH A 26 426 506 HOH HOH . 
L 8 HOH A 27 427 438 HOH HOH . 
L 8 HOH A 28 428 412 HOH HOH . 
L 8 HOH A 29 429 504 HOH HOH . 
L 8 HOH A 30 430 456 HOH HOH . 
L 8 HOH A 31 431 424 HOH HOH . 
L 8 HOH A 32 432 407 HOH HOH . 
L 8 HOH A 33 433 539 HOH HOH . 
L 8 HOH A 34 434 511 HOH HOH . 
L 8 HOH A 35 435 441 HOH HOH . 
L 8 HOH A 36 436 429 HOH HOH . 
L 8 HOH A 37 437 405 HOH HOH . 
L 8 HOH A 38 438 431 HOH HOH . 
L 8 HOH A 39 439 432 HOH HOH . 
L 8 HOH A 40 440 517 HOH HOH . 
L 8 HOH A 41 441 447 HOH HOH . 
L 8 HOH A 42 442 422 HOH HOH . 
L 8 HOH A 43 443 449 HOH HOH . 
L 8 HOH A 44 444 526 HOH HOH . 
L 8 HOH A 45 445 445 HOH HOH . 
L 8 HOH A 46 446 427 HOH HOH . 
L 8 HOH A 47 447 454 HOH HOH . 
L 8 HOH A 48 448 448 HOH HOH . 
L 8 HOH A 49 449 416 HOH HOH . 
L 8 HOH A 50 450 457 HOH HOH . 
L 8 HOH A 51 451 505 HOH HOH . 
L 8 HOH A 52 452 501 HOH HOH . 
L 8 HOH A 53 453 518 HOH HOH . 
L 8 HOH A 54 454 413 HOH HOH . 
L 8 HOH A 55 455 513 HOH HOH . 
L 8 HOH A 56 456 509 HOH HOH . 
L 8 HOH A 57 457 430 HOH HOH . 
L 8 HOH A 58 458 435 HOH HOH . 
L 8 HOH A 59 459 514 HOH HOH . 
L 8 HOH A 60 460 535 HOH HOH . 
L 8 HOH A 61 461 408 HOH HOH . 
L 8 HOH A 62 462 533 HOH HOH . 
L 8 HOH A 63 463 442 HOH HOH . 
L 8 HOH A 64 464 436 HOH HOH . 
L 8 HOH A 65 465 423 HOH HOH . 
L 8 HOH A 66 466 453 HOH HOH . 
L 8 HOH A 67 467 439 HOH HOH . 
L 8 HOH A 68 468 455 HOH HOH . 
L 8 HOH A 69 469 510 HOH HOH . 
L 8 HOH A 70 470 503 HOH HOH . 
L 8 HOH A 71 471 525 HOH HOH . 
L 8 HOH A 72 472 443 HOH HOH . 
L 8 HOH A 73 473 406 HOH HOH . 
L 8 HOH A 74 474 437 HOH HOH . 
L 8 HOH A 75 475 417 HOH HOH . 
L 8 HOH A 76 476 529 HOH HOH . 
L 8 HOH A 77 477 512 HOH HOH . 
L 8 HOH A 78 478 537 HOH HOH . 
L 8 HOH A 79 479 528 HOH HOH . 
L 8 HOH A 80 480 522 HOH HOH . 
L 8 HOH A 81 481 520 HOH HOH . 
L 8 HOH A 82 482 530 HOH HOH . 
L 8 HOH A 83 483 434 HOH HOH . 
L 8 HOH A 84 484 536 HOH HOH . 
L 8 HOH A 85 485 426 HOH HOH . 
L 8 HOH A 86 486 458 HOH HOH . 
L 8 HOH A 87 487 508 HOH HOH . 
L 8 HOH A 88 488 521 HOH HOH . 
L 8 HOH A 89 489 532 HOH HOH . 
L 8 HOH A 90 490 534 HOH HOH . 
L 8 HOH A 91 491 519 HOH HOH . 
L 8 HOH A 92 492 524 HOH HOH . 
L 8 HOH A 93 493 531 HOH HOH . 
L 8 HOH A 94 494 411 HOH HOH . 
L 8 HOH A 95 495 421 HOH HOH . 
L 8 HOH A 96 496 452 HOH HOH . 
L 8 HOH A 97 497 516 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 4.242 55.393 34.036 1 16.84 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 3.475 56.268 35.029 1 15.21 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 2.569 55.411 35.904 1 17.48 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 3.382 54.453 36.743 1 19.42 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 4.416 53.727 35.919 1 17.73 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 4.7 54.058 34.653 1 16.37 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 5.652 53.145 33.9 1 17.94 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 5.934 53.24 32.577 1 18.68 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 6.868 52.324 31.852 1 15.8 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 7.134 52.622 30.562 1 17.96 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 8.002 51.858 29.621 1 18.57 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 8.202 52.388 28.396 1 17.84 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 9.015 51.674 27.363 1 16.4 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 8.947 52.18 26.108 1 18.3 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 9.658 51.581 24.939 1 19.55 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 5.392 56.232 33.507 1 15.43 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 3.315 55.151 32.874 1 17.87 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 4.998 52.538 36.642 1 18.68 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 7.449 51.141 32.578 1 15.49 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 9.84 50.47 27.753 1 16.97 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           20 
#