data_5AX0 # _model_server_result.job_id 7bezaT3x6hQftpN8R0a66Q _model_server_result.datetime_utc '2024-11-05 06:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ax0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":310}' # _entry.id 5AX0 # _exptl.entry_id 5AX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.17 _cell.angle_gamma 90 _cell.entry_id 5AX0 _cell.length_a 75.99 _cell.length_b 101.63 _cell.length_c 43.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.273 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 126 n n C1 H11 D10 sing 127 n n C1 H12 D10 sing 128 n n C1 H13 D10 sing 129 n n C2 C3 D10 sing 130 n n C2 H21 D10 sing 131 n n C2 H22 D10 sing 132 n n C3 C4 D10 sing 133 n n C3 H31 D10 sing 134 n n C3 H32 D10 sing 135 n n C4 C5 D10 sing 136 n n C4 H41 D10 sing 137 n n C4 H42 D10 sing 138 n n C5 C6 D10 sing 139 n n C5 H51 D10 sing 140 n n C5 H52 D10 sing 141 n n C6 C7 D10 sing 142 n n C6 H61 D10 sing 143 n n C6 H62 D10 sing 144 n n C7 C8 D10 sing 145 n n C7 H71 D10 sing 146 n n C7 H72 D10 sing 147 n n C8 C9 D10 sing 148 n n C8 H81 D10 sing 149 n n C8 H82 D10 sing 150 n n C9 C10 D10 sing 151 n n C9 H91 D10 sing 152 n n C9 H92 D10 sing 153 n n C10 H101 D10 sing 154 n n C10 H102 D10 sing 155 n n C10 H103 D10 sing 156 n n # _atom_sites.entry_id 5AX0 _atom_sites.fract_transf_matrix[1][1] 0.01316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 OLB A 1 302 1 OLB OLC . D 3 OLB A 1 303 2 OLB OLC . E 3 OLB A 1 304 3 OLB OLC . F 4 D12 A 1 305 1 D12 D12 . G 4 D12 A 1 306 2 D12 D12 . H 5 C14 A 1 307 1 C14 C14 . I 6 R16 A 1 308 1 R16 R16 . J 7 D10 A 1 309 1 D10 D10 . K 7 D10 A 1 310 2 D10 D10 . L 8 HOH A 1 401 527 HOH HOH . L 8 HOH A 2 402 410 HOH HOH . L 8 HOH A 3 403 409 HOH HOH . L 8 HOH A 4 404 515 HOH HOH . L 8 HOH A 5 405 450 HOH HOH . L 8 HOH A 6 406 403 HOH HOH . L 8 HOH A 7 407 419 HOH HOH . L 8 HOH A 8 408 523 HOH HOH . L 8 HOH A 9 409 404 HOH HOH . L 8 HOH A 10 410 446 HOH HOH . L 8 HOH A 11 411 415 HOH HOH . L 8 HOH A 12 412 444 HOH HOH . L 8 HOH A 13 413 433 HOH HOH . L 8 HOH A 14 414 440 HOH HOH . L 8 HOH A 15 415 451 HOH HOH . L 8 HOH A 16 416 418 HOH HOH . L 8 HOH A 17 417 402 HOH HOH . L 8 HOH A 18 418 428 HOH HOH . L 8 HOH A 19 419 401 HOH HOH . L 8 HOH A 20 420 459 HOH HOH . L 8 HOH A 21 421 507 HOH HOH . L 8 HOH A 22 422 420 HOH HOH . L 8 HOH A 23 423 538 HOH HOH . L 8 HOH A 24 424 425 HOH HOH . L 8 HOH A 25 425 414 HOH HOH . L 8 HOH A 26 426 506 HOH HOH . L 8 HOH A 27 427 438 HOH HOH . L 8 HOH A 28 428 412 HOH HOH . L 8 HOH A 29 429 504 HOH HOH . L 8 HOH A 30 430 456 HOH HOH . L 8 HOH A 31 431 424 HOH HOH . L 8 HOH A 32 432 407 HOH HOH . L 8 HOH A 33 433 539 HOH HOH . L 8 HOH A 34 434 511 HOH HOH . L 8 HOH A 35 435 441 HOH HOH . L 8 HOH A 36 436 429 HOH HOH . L 8 HOH A 37 437 405 HOH HOH . L 8 HOH A 38 438 431 HOH HOH . L 8 HOH A 39 439 432 HOH HOH . L 8 HOH A 40 440 517 HOH HOH . L 8 HOH A 41 441 447 HOH HOH . L 8 HOH A 42 442 422 HOH HOH . L 8 HOH A 43 443 449 HOH HOH . L 8 HOH A 44 444 526 HOH HOH . L 8 HOH A 45 445 445 HOH HOH . L 8 HOH A 46 446 427 HOH HOH . L 8 HOH A 47 447 454 HOH HOH . L 8 HOH A 48 448 448 HOH HOH . L 8 HOH A 49 449 416 HOH HOH . L 8 HOH A 50 450 457 HOH HOH . L 8 HOH A 51 451 505 HOH HOH . L 8 HOH A 52 452 501 HOH HOH . L 8 HOH A 53 453 518 HOH HOH . L 8 HOH A 54 454 413 HOH HOH . L 8 HOH A 55 455 513 HOH HOH . L 8 HOH A 56 456 509 HOH HOH . L 8 HOH A 57 457 430 HOH HOH . L 8 HOH A 58 458 435 HOH HOH . L 8 HOH A 59 459 514 HOH HOH . L 8 HOH A 60 460 535 HOH HOH . L 8 HOH A 61 461 408 HOH HOH . L 8 HOH A 62 462 533 HOH HOH . L 8 HOH A 63 463 442 HOH HOH . L 8 HOH A 64 464 436 HOH HOH . L 8 HOH A 65 465 423 HOH HOH . L 8 HOH A 66 466 453 HOH HOH . L 8 HOH A 67 467 439 HOH HOH . L 8 HOH A 68 468 455 HOH HOH . L 8 HOH A 69 469 510 HOH HOH . L 8 HOH A 70 470 503 HOH HOH . L 8 HOH A 71 471 525 HOH HOH . L 8 HOH A 72 472 443 HOH HOH . L 8 HOH A 73 473 406 HOH HOH . L 8 HOH A 74 474 437 HOH HOH . L 8 HOH A 75 475 417 HOH HOH . L 8 HOH A 76 476 529 HOH HOH . L 8 HOH A 77 477 512 HOH HOH . L 8 HOH A 78 478 537 HOH HOH . L 8 HOH A 79 479 528 HOH HOH . L 8 HOH A 80 480 522 HOH HOH . L 8 HOH A 81 481 520 HOH HOH . L 8 HOH A 82 482 530 HOH HOH . L 8 HOH A 83 483 434 HOH HOH . L 8 HOH A 84 484 536 HOH HOH . L 8 HOH A 85 485 426 HOH HOH . L 8 HOH A 86 486 458 HOH HOH . L 8 HOH A 87 487 508 HOH HOH . L 8 HOH A 88 488 521 HOH HOH . L 8 HOH A 89 489 532 HOH HOH . L 8 HOH A 90 490 534 HOH HOH . L 8 HOH A 91 491 519 HOH HOH . L 8 HOH A 92 492 524 HOH HOH . L 8 HOH A 93 493 531 HOH HOH . L 8 HOH A 94 494 411 HOH HOH . L 8 HOH A 95 495 421 HOH HOH . L 8 HOH A 96 496 452 HOH HOH . L 8 HOH A 97 497 516 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . K 7 20.924 50.459 19.51 1 46.34 ? C1 D10 310 A 1 HETATM 2 C C2 D10 . . . K 7 21.307 51.878 19.868 1 47.5 ? C2 D10 310 A 1 HETATM 3 C C3 D10 . . . K 7 21.391 52.034 21.372 1 48.26 ? C3 D10 310 A 1 HETATM 4 C C4 D10 . . . K 7 21.705 53.478 21.695 1 49.85 ? C4 D10 310 A 1 HETATM 5 C C5 D10 . . . K 7 21.993 53.652 23.171 1 51.15 ? C5 D10 310 A 1 HETATM 6 C C6 D10 . . . K 7 22.104 55.134 23.456 1 52.09 ? C6 D10 310 A 1 HETATM 7 C C7 D10 . . . K 7 22.425 55.372 24.915 1 51.54 ? C7 D10 310 A 1 HETATM 8 C C8 D10 . . . K 7 22.194 56.834 25.238 1 51.78 ? C8 D10 310 A 1 HETATM 9 C C9 D10 . . . K 7 23.282 57.685 24.62 1 50.7 ? C9 D10 310 A 1 HETATM 10 C C10 D10 . . . K 7 22.949 59.151 24.802 1 49.95 ? C10 D10 310 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #