data_5AX1
#
_model_server_result.job_id            e7ZnVCbsHXYX4-MwleJw1g 
_model_server_result.datetime_utc      '2024-11-26 15:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ax1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5AX1 
#
_exptl.entry_id    5AX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.17 
_cell.angle_gamma         90 
_cell.entry_id            5AX1 
_cell.length_a            75.99 
_cell.length_b            101.63 
_cell.length_c            43.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             225 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              218 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.267 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 501 n n 
C1 C6 RET sing 502 n n 
C1 C16 RET sing 503 n n 
C1 C17 RET sing 504 n n 
C2 C3 RET sing 505 n n 
C2 H21 RET sing 506 n n 
C2 H22 RET sing 507 n n 
C3 C4 RET sing 508 n n 
C3 H31 RET sing 509 n n 
C3 H32 RET sing 510 n n 
C4 C5 RET sing 511 n n 
C4 H41 RET sing 512 n n 
C4 H42 RET sing 513 n n 
C5 C6 RET doub 514 n n 
C5 C18 RET sing 515 n n 
C6 C7 RET sing 516 n n 
C7 C8 RET doub 517 e n 
C7 H7 RET sing 518 n n 
C8 C9 RET sing 519 n n 
C8 H8 RET sing 520 n n 
C9 C10 RET doub 521 e n 
C9 C19 RET sing 522 n n 
C10 C11 RET sing 523 n n 
C10 H10 RET sing 524 n n 
C11 C12 RET doub 525 e n 
C11 H11 RET sing 526 n n 
C12 C13 RET sing 527 n n 
C12 H12 RET sing 528 n n 
C13 C14 RET doub 529 e n 
C13 C20 RET sing 530 n n 
C14 C15 RET sing 531 n n 
C14 H14 RET sing 532 n n 
C15 O1 RET doub 533 n n 
C15 H15 RET sing 534 n n 
C16 H161 RET sing 535 n n 
C16 H162 RET sing 536 n n 
C16 H163 RET sing 537 n n 
C17 H171 RET sing 538 n n 
C17 H172 RET sing 539 n n 
C17 H173 RET sing 540 n n 
C18 H181 RET sing 541 n n 
C18 H182 RET sing 542 n n 
C18 H183 RET sing 543 n n 
C19 H191 RET sing 544 n n 
C19 H192 RET sing 545 n n 
C19 H193 RET sing 546 n n 
C20 H201 RET sing 547 n n 
C20 H202 RET sing 548 n n 
C20 H203 RET sing 549 n n 
#
_atom_sites.entry_id                     5AX1 
_atom_sites.fract_transf_matrix[1][1]    0.01316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007346 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 1 RET RET . 
C 3 OLB A 1 302 1 OLB OLC . 
D 3 OLB A 1 303 2 OLB OLC . 
E 4 C14 A 1 304 1 C14 C14 . 
F 5 D10 A 1 305 1 D10 D10 . 
G 5 D10 A 1 306 2 D10 D10 . 
H 6 R16 A 1 307 1 R16 R16 . 
I 7 D12 A 1 308 1 D12 D12 . 
J 7 D12 A 1 309 2 D12 D12 . 
K 8 HOH A 1 401 410 HOH HOH . 
K 8 HOH A 2 402 441 HOH HOH . 
K 8 HOH A 3 403 402 HOH HOH . 
K 8 HOH A 4 404 420 HOH HOH . 
K 8 HOH A 5 405 527 HOH HOH . 
K 8 HOH A 6 406 450 HOH HOH . 
K 8 HOH A 7 407 447 HOH HOH . 
K 8 HOH A 8 408 412 HOH HOH . 
K 8 HOH A 9 409 448 HOH HOH . 
K 8 HOH A 10 410 401 HOH HOH . 
K 8 HOH A 11 411 529 HOH HOH . 
K 8 HOH A 12 412 515 HOH HOH . 
K 8 HOH A 13 413 440 HOH HOH . 
K 8 HOH A 14 414 419 HOH HOH . 
K 8 HOH A 15 415 446 HOH HOH . 
K 8 HOH A 16 416 403 HOH HOH . 
K 8 HOH A 17 417 444 HOH HOH . 
K 8 HOH A 18 418 504 HOH HOH . 
K 8 HOH A 19 419 424 HOH HOH . 
K 8 HOH A 20 420 404 HOH HOH . 
K 8 HOH A 21 421 433 HOH HOH . 
K 8 HOH A 22 422 407 HOH HOH . 
K 8 HOH A 23 423 507 HOH HOH . 
K 8 HOH A 24 424 431 HOH HOH . 
K 8 HOH A 25 425 526 HOH HOH . 
K 8 HOH A 26 426 432 HOH HOH . 
K 8 HOH A 27 427 422 HOH HOH . 
K 8 HOH A 28 428 425 HOH HOH . 
K 8 HOH A 29 429 511 HOH HOH . 
K 8 HOH A 30 430 456 HOH HOH . 
K 8 HOH A 31 431 428 HOH HOH . 
K 8 HOH A 32 432 438 HOH HOH . 
K 8 HOH A 33 433 414 HOH HOH . 
K 8 HOH A 34 434 418 HOH HOH . 
K 8 HOH A 35 435 501 HOH HOH . 
K 8 HOH A 36 436 405 HOH HOH . 
K 8 HOH A 37 437 505 HOH HOH . 
K 8 HOH A 38 438 518 HOH HOH . 
K 8 HOH A 39 439 524 HOH HOH . 
K 8 HOH A 40 440 427 HOH HOH . 
K 8 HOH A 41 441 513 HOH HOH . 
K 8 HOH A 42 442 429 HOH HOH . 
K 8 HOH A 43 443 445 HOH HOH . 
K 8 HOH A 44 444 455 HOH HOH . 
K 8 HOH A 45 445 442 HOH HOH . 
K 8 HOH A 46 446 434 HOH HOH . 
K 8 HOH A 47 447 413 HOH HOH . 
K 8 HOH A 48 448 416 HOH HOH . 
K 8 HOH A 49 449 503 HOH HOH . 
K 8 HOH A 50 450 514 HOH HOH . 
K 8 HOH A 51 451 435 HOH HOH . 
K 8 HOH A 52 452 430 HOH HOH . 
K 8 HOH A 53 453 519 HOH HOH . 
K 8 HOH A 54 454 520 HOH HOH . 
K 8 HOH A 55 455 436 HOH HOH . 
K 8 HOH A 56 456 417 HOH HOH . 
K 8 HOH A 57 457 423 HOH HOH . 
K 8 HOH A 58 458 528 HOH HOH . 
K 8 HOH A 59 459 406 HOH HOH . 
K 8 HOH A 60 460 517 HOH HOH . 
K 8 HOH A 61 461 512 HOH HOH . 
K 8 HOH A 62 462 509 HOH HOH . 
K 8 HOH A 63 463 451 HOH HOH . 
K 8 HOH A 64 464 510 HOH HOH . 
K 8 HOH A 65 465 437 HOH HOH . 
K 8 HOH A 66 466 415 HOH HOH . 
K 8 HOH A 67 467 454 HOH HOH . 
K 8 HOH A 68 468 439 HOH HOH . 
K 8 HOH A 69 469 523 HOH HOH . 
K 8 HOH A 70 470 522 HOH HOH . 
K 8 HOH A 71 471 443 HOH HOH . 
K 8 HOH A 72 472 530 HOH HOH . 
K 8 HOH A 73 473 408 HOH HOH . 
K 8 HOH A 74 474 506 HOH HOH . 
K 8 HOH A 75 475 525 HOH HOH . 
K 8 HOH A 76 476 453 HOH HOH . 
K 8 HOH A 77 477 426 HOH HOH . 
K 8 HOH A 78 478 521 HOH HOH . 
K 8 HOH A 79 479 531 HOH HOH . 
K 8 HOH A 80 480 409 HOH HOH . 
K 8 HOH A 81 481 449 HOH HOH . 
K 8 HOH A 82 482 508 HOH HOH . 
K 8 HOH A 83 483 421 HOH HOH . 
K 8 HOH A 84 484 411 HOH HOH . 
K 8 HOH A 85 485 516 HOH HOH . 
K 8 HOH A 86 486 452 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 4.263 55.352 33.971 1 16.39 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 3.51 56.228 34.997 1 18.31 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 2.58 55.428 35.883 1 19.4 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 3.372 54.43 36.689 1 17.54 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 4.465 53.747 35.893 1 17.24 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 4.754 54.04 34.606 1 15.38 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 5.723 53.22 33.87 1 15.96 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 5.963 53.178 32.521 1 15.66 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 6.917 52.347 31.824 1 16.64 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 7.178 52.63 30.521 1 17.99 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 8.044 51.942 29.617 1 18.75 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 8.162 52.397 28.319 1 18.56 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 8.975 51.741 27.315 1 18.43 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 8.92 52.215 26.07 1 17.91 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 9.699 51.603 24.937 1 18.72 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 5.424 56.158 33.428 1 12.64 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 3.346 55.116 32.799 1 15.06 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 4.924 52.489 36.6 1 16.05 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 7.6 51.195 32.518 1 15.25 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 9.847 50.556 27.691 1 16.38 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#