data_5AX1 # _model_server_result.job_id IWFZcEJ3IE5fJ9JXDkAuvg _model_server_result.datetime_utc '2024-11-23 02:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ax1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5AX1 # _exptl.entry_id 5AX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.17 _cell.angle_gamma 90 _cell.entry_id 5AX1 _cell.length_a 75.99 _cell.length_b 101.63 _cell.length_c 43.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.267 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 348 n n C1 O20 OLB sing 349 n n C2 C1 OLB sing 350 n n C3 C2 OLB sing 351 n n C4 C3 OLB sing 352 n n C5 C4 OLB sing 353 n n C5 C6 OLB sing 354 n n O20 C21 OLB sing 355 n n C21 C22 OLB sing 356 n n C22 C24 OLB sing 357 n n O23 C22 OLB sing 358 n n C24 O25 OLB sing 359 n n C6 C7 OLB sing 360 n n C7 C8 OLB sing 361 n n C8 C9 OLB sing 362 n n C9 C10 OLB doub 363 z n C10 C11 OLB sing 364 n n C2 H2 OLB sing 365 n n C2 H2A OLB sing 366 n n C3 H3 OLB sing 367 n n C3 H3A OLB sing 368 n n C4 H4 OLB sing 369 n n C4 H4A OLB sing 370 n n C5 H5 OLB sing 371 n n C5 H5A OLB sing 372 n n C21 H21 OLB sing 373 n n C21 H21A OLB sing 374 n n C22 H22 OLB sing 375 n n O23 HO23 OLB sing 376 n n C24 H24 OLB sing 377 n n C24 H24A OLB sing 378 n n O25 HO25 OLB sing 379 n n C6 H16 OLB sing 380 n n C6 H17 OLB sing 381 n n C7 H18 OLB sing 382 n n C7 H19 OLB sing 383 n n C8 H20 OLB sing 384 n n C8 H211 OLB sing 385 n n C9 H221 OLB sing 386 n n C10 H23 OLB sing 387 n n C11 H241 OLB sing 388 n n C11 H25 OLB sing 389 n n C11 C12 OLB sing 390 n n C12 H26 OLB sing 391 n n C12 C13 OLB sing 392 n n C12 H27 OLB sing 393 n n C13 C14 OLB sing 394 n n C13 H28 OLB sing 395 n n C13 H29 OLB sing 396 n n C14 H30 OLB sing 397 n n C14 H31 OLB sing 398 n n C14 C15 OLB sing 399 n n C15 C16 OLB sing 400 n n C15 H32 OLB sing 401 n n C15 H33 OLB sing 402 n n C16 H34 OLB sing 403 n n C16 H35 OLB sing 404 n n C16 C17 OLB sing 405 n n C17 C18 OLB sing 406 n n C17 H36 OLB sing 407 n n C17 H37 OLB sing 408 n n C18 H38 OLB sing 409 n n C18 H39 OLB sing 410 n n C18 H40 OLB sing 411 n n # _atom_sites.entry_id 5AX1 _atom_sites.fract_transf_matrix[1][1] 0.01316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 OLB A 1 302 1 OLB OLC . D 3 OLB A 1 303 2 OLB OLC . E 4 C14 A 1 304 1 C14 C14 . F 5 D10 A 1 305 1 D10 D10 . G 5 D10 A 1 306 2 D10 D10 . H 6 R16 A 1 307 1 R16 R16 . I 7 D12 A 1 308 1 D12 D12 . J 7 D12 A 1 309 2 D12 D12 . K 8 HOH A 1 401 410 HOH HOH . K 8 HOH A 2 402 441 HOH HOH . K 8 HOH A 3 403 402 HOH HOH . K 8 HOH A 4 404 420 HOH HOH . K 8 HOH A 5 405 527 HOH HOH . K 8 HOH A 6 406 450 HOH HOH . K 8 HOH A 7 407 447 HOH HOH . K 8 HOH A 8 408 412 HOH HOH . K 8 HOH A 9 409 448 HOH HOH . K 8 HOH A 10 410 401 HOH HOH . K 8 HOH A 11 411 529 HOH HOH . K 8 HOH A 12 412 515 HOH HOH . K 8 HOH A 13 413 440 HOH HOH . K 8 HOH A 14 414 419 HOH HOH . K 8 HOH A 15 415 446 HOH HOH . K 8 HOH A 16 416 403 HOH HOH . K 8 HOH A 17 417 444 HOH HOH . K 8 HOH A 18 418 504 HOH HOH . K 8 HOH A 19 419 424 HOH HOH . K 8 HOH A 20 420 404 HOH HOH . K 8 HOH A 21 421 433 HOH HOH . K 8 HOH A 22 422 407 HOH HOH . K 8 HOH A 23 423 507 HOH HOH . K 8 HOH A 24 424 431 HOH HOH . K 8 HOH A 25 425 526 HOH HOH . K 8 HOH A 26 426 432 HOH HOH . K 8 HOH A 27 427 422 HOH HOH . K 8 HOH A 28 428 425 HOH HOH . K 8 HOH A 29 429 511 HOH HOH . K 8 HOH A 30 430 456 HOH HOH . K 8 HOH A 31 431 428 HOH HOH . K 8 HOH A 32 432 438 HOH HOH . K 8 HOH A 33 433 414 HOH HOH . K 8 HOH A 34 434 418 HOH HOH . K 8 HOH A 35 435 501 HOH HOH . K 8 HOH A 36 436 405 HOH HOH . K 8 HOH A 37 437 505 HOH HOH . K 8 HOH A 38 438 518 HOH HOH . K 8 HOH A 39 439 524 HOH HOH . K 8 HOH A 40 440 427 HOH HOH . K 8 HOH A 41 441 513 HOH HOH . K 8 HOH A 42 442 429 HOH HOH . K 8 HOH A 43 443 445 HOH HOH . K 8 HOH A 44 444 455 HOH HOH . K 8 HOH A 45 445 442 HOH HOH . K 8 HOH A 46 446 434 HOH HOH . K 8 HOH A 47 447 413 HOH HOH . K 8 HOH A 48 448 416 HOH HOH . K 8 HOH A 49 449 503 HOH HOH . K 8 HOH A 50 450 514 HOH HOH . K 8 HOH A 51 451 435 HOH HOH . K 8 HOH A 52 452 430 HOH HOH . K 8 HOH A 53 453 519 HOH HOH . K 8 HOH A 54 454 520 HOH HOH . K 8 HOH A 55 455 436 HOH HOH . K 8 HOH A 56 456 417 HOH HOH . K 8 HOH A 57 457 423 HOH HOH . K 8 HOH A 58 458 528 HOH HOH . K 8 HOH A 59 459 406 HOH HOH . K 8 HOH A 60 460 517 HOH HOH . K 8 HOH A 61 461 512 HOH HOH . K 8 HOH A 62 462 509 HOH HOH . K 8 HOH A 63 463 451 HOH HOH . K 8 HOH A 64 464 510 HOH HOH . K 8 HOH A 65 465 437 HOH HOH . K 8 HOH A 66 466 415 HOH HOH . K 8 HOH A 67 467 454 HOH HOH . K 8 HOH A 68 468 439 HOH HOH . K 8 HOH A 69 469 523 HOH HOH . K 8 HOH A 70 470 522 HOH HOH . K 8 HOH A 71 471 443 HOH HOH . K 8 HOH A 72 472 530 HOH HOH . K 8 HOH A 73 473 408 HOH HOH . K 8 HOH A 74 474 506 HOH HOH . K 8 HOH A 75 475 525 HOH HOH . K 8 HOH A 76 476 453 HOH HOH . K 8 HOH A 77 477 426 HOH HOH . K 8 HOH A 78 478 521 HOH HOH . K 8 HOH A 79 479 531 HOH HOH . K 8 HOH A 80 480 409 HOH HOH . K 8 HOH A 81 481 449 HOH HOH . K 8 HOH A 82 482 508 HOH HOH . K 8 HOH A 83 483 421 HOH HOH . K 8 HOH A 84 484 411 HOH HOH . K 8 HOH A 85 485 516 HOH HOH . K 8 HOH A 86 486 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . C 3 0.377 63.999 18.856 1 53.8 ? C1 OLB 302 A 1 HETATM 2 C C2 OLB . . . C 3 -0.44 62.89 18.231 1 51.5 ? C2 OLB 302 A 1 HETATM 3 C C3 OLB . . . C 3 0.053 61.525 18.657 1 50.11 ? C3 OLB 302 A 1 HETATM 4 C C4 OLB . . . C 3 0.049 60.512 17.532 1 49.3 ? C4 OLB 302 A 1 HETATM 5 C C5 OLB . . . C 3 0.274 59.107 18.043 1 47.85 ? C5 OLB 302 A 1 HETATM 6 O O19 OLB . . . C 3 1.575 63.891 19.037 1 55.24 ? O19 OLB 302 A 1 HETATM 7 O O20 OLB . . . C 3 -0.315 65.093 19.19 1 54.31 ? O20 OLB 302 A 1 HETATM 8 C C21 OLB . . . C 3 0.447 66.279 19.211 1 53.83 ? C21 OLB 302 A 1 HETATM 9 C C22 OLB . . . C 3 -0.372 67.382 19.847 1 54.73 ? C22 OLB 302 A 1 HETATM 10 O O23 OLB . . . C 3 0.241 68.633 19.63 1 53.98 ? O23 OLB 302 A 1 HETATM 11 C C24 OLB . . . C 3 -1.764 67.393 19.254 1 55.97 ? C24 OLB 302 A 1 HETATM 12 O O25 OLB . . . C 3 -2.699 67.322 20.309 1 56.51 ? O25 OLB 302 A 1 HETATM 13 C C6 OLB . . . C 3 1.478 58.45 17.412 1 46.45 ? C6 OLB 302 A 1 HETATM 14 C C7 OLB . . . C 3 2.107 57.417 18.318 1 46.39 ? C7 OLB 302 A 1 HETATM 15 C C8 OLB . . . C 3 1.624 56.014 18.029 1 47.85 ? C8 OLB 302 A 1 HETATM 16 C C9 OLB . . . C 3 2.234 55.427 16.78 1 48.2 ? C9 OLB 302 A 1 HETATM 17 C C10 OLB . . . C 3 1.697 54.325 16.22 1 50.32 ? C10 OLB 302 A 1 HETATM 18 C C11 OLB . . . C 3 0.488 53.661 16.837 1 52.12 ? C11 OLB 302 A 1 HETATM 19 C C12 OLB . . . C 3 0.395 52.199 16.457 1 54.04 ? C12 OLB 302 A 1 HETATM 20 C C13 OLB . . . C 3 -0.748 51.93 15.503 1 56.45 ? C13 OLB 302 A 1 HETATM 21 C C14 OLB . . . C 3 -1.387 50.577 15.729 1 57.88 ? C14 OLB 302 A 1 HETATM 22 C C15 OLB . . . C 3 -0.385 49.446 15.671 1 58.98 ? C15 OLB 302 A 1 HETATM 23 C C16 OLB . . . C 3 -0.332 48.797 14.306 1 60.64 ? C16 OLB 302 A 1 HETATM 24 C C17 OLB . . . C 3 -1.556 47.956 14.009 1 61.37 ? C17 OLB 302 A 1 HETATM 25 C C18 OLB . . . C 3 -1.43 47.196 12.705 1 61.07 ? C18 OLB 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #