data_5AX1 # _model_server_result.job_id LL8Nqele0kNbpWzfLTCRlQ _model_server_result.datetime_utc '2024-11-26 16:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ax1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5AX1 # _exptl.entry_id 5AX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.17 _cell.angle_gamma 90 _cell.entry_id 5AX1 _cell.length_a 75.99 _cell.length_b 101.63 _cell.length_c 43.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.267 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 348 n n C1 O20 OLB sing 349 n n C2 C1 OLB sing 350 n n C3 C2 OLB sing 351 n n C4 C3 OLB sing 352 n n C5 C4 OLB sing 353 n n C5 C6 OLB sing 354 n n O20 C21 OLB sing 355 n n C21 C22 OLB sing 356 n n C22 C24 OLB sing 357 n n O23 C22 OLB sing 358 n n C24 O25 OLB sing 359 n n C6 C7 OLB sing 360 n n C7 C8 OLB sing 361 n n C8 C9 OLB sing 362 n n C9 C10 OLB doub 363 z n C10 C11 OLB sing 364 n n C2 H2 OLB sing 365 n n C2 H2A OLB sing 366 n n C3 H3 OLB sing 367 n n C3 H3A OLB sing 368 n n C4 H4 OLB sing 369 n n C4 H4A OLB sing 370 n n C5 H5 OLB sing 371 n n C5 H5A OLB sing 372 n n C21 H21 OLB sing 373 n n C21 H21A OLB sing 374 n n C22 H22 OLB sing 375 n n O23 HO23 OLB sing 376 n n C24 H24 OLB sing 377 n n C24 H24A OLB sing 378 n n O25 HO25 OLB sing 379 n n C6 H16 OLB sing 380 n n C6 H17 OLB sing 381 n n C7 H18 OLB sing 382 n n C7 H19 OLB sing 383 n n C8 H20 OLB sing 384 n n C8 H211 OLB sing 385 n n C9 H221 OLB sing 386 n n C10 H23 OLB sing 387 n n C11 H241 OLB sing 388 n n C11 H25 OLB sing 389 n n C11 C12 OLB sing 390 n n C12 H26 OLB sing 391 n n C12 C13 OLB sing 392 n n C12 H27 OLB sing 393 n n C13 C14 OLB sing 394 n n C13 H28 OLB sing 395 n n C13 H29 OLB sing 396 n n C14 H30 OLB sing 397 n n C14 H31 OLB sing 398 n n C14 C15 OLB sing 399 n n C15 C16 OLB sing 400 n n C15 H32 OLB sing 401 n n C15 H33 OLB sing 402 n n C16 H34 OLB sing 403 n n C16 H35 OLB sing 404 n n C16 C17 OLB sing 405 n n C17 C18 OLB sing 406 n n C17 H36 OLB sing 407 n n C17 H37 OLB sing 408 n n C18 H38 OLB sing 409 n n C18 H39 OLB sing 410 n n C18 H40 OLB sing 411 n n # _atom_sites.entry_id 5AX1 _atom_sites.fract_transf_matrix[1][1] 0.01316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 1 RET RET . C 3 OLB A 1 302 1 OLB OLC . D 3 OLB A 1 303 2 OLB OLC . E 4 C14 A 1 304 1 C14 C14 . F 5 D10 A 1 305 1 D10 D10 . G 5 D10 A 1 306 2 D10 D10 . H 6 R16 A 1 307 1 R16 R16 . I 7 D12 A 1 308 1 D12 D12 . J 7 D12 A 1 309 2 D12 D12 . K 8 HOH A 1 401 410 HOH HOH . K 8 HOH A 2 402 441 HOH HOH . K 8 HOH A 3 403 402 HOH HOH . K 8 HOH A 4 404 420 HOH HOH . K 8 HOH A 5 405 527 HOH HOH . K 8 HOH A 6 406 450 HOH HOH . K 8 HOH A 7 407 447 HOH HOH . K 8 HOH A 8 408 412 HOH HOH . K 8 HOH A 9 409 448 HOH HOH . K 8 HOH A 10 410 401 HOH HOH . K 8 HOH A 11 411 529 HOH HOH . K 8 HOH A 12 412 515 HOH HOH . K 8 HOH A 13 413 440 HOH HOH . K 8 HOH A 14 414 419 HOH HOH . K 8 HOH A 15 415 446 HOH HOH . K 8 HOH A 16 416 403 HOH HOH . K 8 HOH A 17 417 444 HOH HOH . K 8 HOH A 18 418 504 HOH HOH . K 8 HOH A 19 419 424 HOH HOH . K 8 HOH A 20 420 404 HOH HOH . K 8 HOH A 21 421 433 HOH HOH . K 8 HOH A 22 422 407 HOH HOH . K 8 HOH A 23 423 507 HOH HOH . K 8 HOH A 24 424 431 HOH HOH . K 8 HOH A 25 425 526 HOH HOH . K 8 HOH A 26 426 432 HOH HOH . K 8 HOH A 27 427 422 HOH HOH . K 8 HOH A 28 428 425 HOH HOH . K 8 HOH A 29 429 511 HOH HOH . K 8 HOH A 30 430 456 HOH HOH . K 8 HOH A 31 431 428 HOH HOH . K 8 HOH A 32 432 438 HOH HOH . K 8 HOH A 33 433 414 HOH HOH . K 8 HOH A 34 434 418 HOH HOH . K 8 HOH A 35 435 501 HOH HOH . K 8 HOH A 36 436 405 HOH HOH . K 8 HOH A 37 437 505 HOH HOH . K 8 HOH A 38 438 518 HOH HOH . K 8 HOH A 39 439 524 HOH HOH . K 8 HOH A 40 440 427 HOH HOH . K 8 HOH A 41 441 513 HOH HOH . K 8 HOH A 42 442 429 HOH HOH . K 8 HOH A 43 443 445 HOH HOH . K 8 HOH A 44 444 455 HOH HOH . K 8 HOH A 45 445 442 HOH HOH . K 8 HOH A 46 446 434 HOH HOH . K 8 HOH A 47 447 413 HOH HOH . K 8 HOH A 48 448 416 HOH HOH . K 8 HOH A 49 449 503 HOH HOH . K 8 HOH A 50 450 514 HOH HOH . K 8 HOH A 51 451 435 HOH HOH . K 8 HOH A 52 452 430 HOH HOH . K 8 HOH A 53 453 519 HOH HOH . K 8 HOH A 54 454 520 HOH HOH . K 8 HOH A 55 455 436 HOH HOH . K 8 HOH A 56 456 417 HOH HOH . K 8 HOH A 57 457 423 HOH HOH . K 8 HOH A 58 458 528 HOH HOH . K 8 HOH A 59 459 406 HOH HOH . K 8 HOH A 60 460 517 HOH HOH . K 8 HOH A 61 461 512 HOH HOH . K 8 HOH A 62 462 509 HOH HOH . K 8 HOH A 63 463 451 HOH HOH . K 8 HOH A 64 464 510 HOH HOH . K 8 HOH A 65 465 437 HOH HOH . K 8 HOH A 66 466 415 HOH HOH . K 8 HOH A 67 467 454 HOH HOH . K 8 HOH A 68 468 439 HOH HOH . K 8 HOH A 69 469 523 HOH HOH . K 8 HOH A 70 470 522 HOH HOH . K 8 HOH A 71 471 443 HOH HOH . K 8 HOH A 72 472 530 HOH HOH . K 8 HOH A 73 473 408 HOH HOH . K 8 HOH A 74 474 506 HOH HOH . K 8 HOH A 75 475 525 HOH HOH . K 8 HOH A 76 476 453 HOH HOH . K 8 HOH A 77 477 426 HOH HOH . K 8 HOH A 78 478 521 HOH HOH . K 8 HOH A 79 479 531 HOH HOH . K 8 HOH A 80 480 409 HOH HOH . K 8 HOH A 81 481 449 HOH HOH . K 8 HOH A 82 482 508 HOH HOH . K 8 HOH A 83 483 421 HOH HOH . K 8 HOH A 84 484 411 HOH HOH . K 8 HOH A 85 485 516 HOH HOH . K 8 HOH A 86 486 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . D 3 19.646 67.778 30.587 1 66.95 ? C1 OLB 303 A 1 HETATM 2 C C2 OLB . . . D 3 19.416 66.283 30.534 1 64.55 ? C2 OLB 303 A 1 HETATM 3 C C3 OLB . . . D 3 20.136 65.572 31.66 1 61.78 ? C3 OLB 303 A 1 HETATM 4 C C4 OLB . . . D 3 20.587 64.178 31.284 1 59.06 ? C4 OLB 303 A 1 HETATM 5 C C5 OLB . . . D 3 19.477 63.161 31.426 1 56.58 ? C5 OLB 303 A 1 HETATM 6 O O19 OLB . . . D 3 20.504 68.272 31.292 1 68.35 ? O19 OLB 303 A 1 HETATM 7 O O20 OLB . . . D 3 18.84 68.501 29.803 1 67.88 ? O20 OLB 303 A 1 HETATM 8 C C21 OLB . . . D 3 19.385 69.722 29.352 1 68.73 ? C21 OLB 303 A 1 HETATM 9 C C22 OLB . . . D 3 19.005 70.827 30.315 1 69.96 ? C22 OLB 303 A 1 HETATM 10 O O23 OLB . . . D 3 20.129 71.161 31.098 1 71.31 ? O23 OLB 303 A 1 HETATM 11 C C24 OLB . . . D 3 18.532 72.045 29.55 1 69.4 ? C24 OLB 303 A 1 HETATM 12 O O25 OLB . . . D 3 17.162 72.256 29.822 1 68.75 ? O25 OLB 303 A 1 HETATM 13 C C6 OLB . . . D 3 20.004 61.781 31.745 1 55.08 ? C6 OLB 303 A 1 HETATM 14 C C7 OLB . . . D 3 19.582 61.306 33.116 1 53.72 ? C7 OLB 303 A 1 HETATM 15 C C8 OLB . . . D 3 19.45 59.8 33.187 1 52.35 ? C8 OLB 303 A 1 HETATM 16 C C9 OLB . . . D 3 18.138 59.313 32.612 1 50.25 ? C9 OLB 303 A 1 HETATM 17 C C10 OLB . . . D 3 18.055 58.111 32.002 1 47.36 ? C10 OLB 303 A 1 HETATM 18 C C11 OLB . . . D 3 19.265 57.213 31.876 1 44.71 ? C11 OLB 303 A 1 HETATM 19 C C12 OLB . . . D 3 19.088 55.92 32.637 1 44.36 ? C12 OLB 303 A 1 HETATM 20 C C13 OLB . . . D 3 20.254 54.972 32.476 1 43.2 ? C13 OLB 303 A 1 HETATM 21 C C14 OLB . . . D 3 19.962 53.629 33.1 1 43.94 ? C14 OLB 303 A 1 HETATM 22 C C15 OLB . . . D 3 21.018 52.589 32.796 1 45.38 ? C15 OLB 303 A 1 HETATM 23 C C16 OLB . . . D 3 20.588 51.207 33.238 1 46.41 ? C16 OLB 303 A 1 HETATM 24 C C17 OLB . . . D 3 21.567 50.133 32.818 1 48.25 ? C17 OLB 303 A 1 HETATM 25 C C18 OLB . . . D 3 21.057 48.737 33.102 1 48.61 ? C18 OLB 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #