data_5AX1
#
_model_server_result.job_id            KdKHWyanlG7GacsLIvfQwA 
_model_server_result.datetime_utc      '2024-11-23 01:58:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ax1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    5AX1 
#
_exptl.entry_id    5AX1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.17 
_cell.angle_gamma         90 
_cell.entry_id            5AX1 
_cell.length_a            75.99 
_cell.length_b            101.63 
_cell.length_c            43.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AX1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             225 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              218 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.267 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 157 n n 
C1 H11 D12 sing 158 n n 
C1 H12 D12 sing 159 n n 
C1 H13 D12 sing 160 n n 
C2 C3 D12 sing 161 n n 
C2 H21 D12 sing 162 n n 
C2 H22 D12 sing 163 n n 
C3 C4 D12 sing 164 n n 
C3 H31 D12 sing 165 n n 
C3 H32 D12 sing 166 n n 
C4 C5 D12 sing 167 n n 
C4 H41 D12 sing 168 n n 
C4 H42 D12 sing 169 n n 
C5 C6 D12 sing 170 n n 
C5 H51 D12 sing 171 n n 
C5 H52 D12 sing 172 n n 
C6 C7 D12 sing 173 n n 
C6 H61 D12 sing 174 n n 
C6 H62 D12 sing 175 n n 
C7 C8 D12 sing 176 n n 
C7 H71 D12 sing 177 n n 
C7 H72 D12 sing 178 n n 
C8 C9 D12 sing 179 n n 
C8 H81 D12 sing 180 n n 
C8 H82 D12 sing 181 n n 
C9 C10 D12 sing 182 n n 
C9 H91 D12 sing 183 n n 
C9 H92 D12 sing 184 n n 
C10 C11 D12 sing 185 n n 
C10 H101 D12 sing 186 n n 
C10 H102 D12 sing 187 n n 
C11 C12 D12 sing 188 n n 
C11 H111 D12 sing 189 n n 
C11 H112 D12 sing 190 n n 
C12 H121 D12 sing 191 n n 
C12 H122 D12 sing 192 n n 
C12 H123 D12 sing 193 n n 
#
_atom_sites.entry_id                     5AX1 
_atom_sites.fract_transf_matrix[1][1]    0.01316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007346 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 1 RET RET . 
C 3 OLB A 1 302 1 OLB OLC . 
D 3 OLB A 1 303 2 OLB OLC . 
E 4 C14 A 1 304 1 C14 C14 . 
F 5 D10 A 1 305 1 D10 D10 . 
G 5 D10 A 1 306 2 D10 D10 . 
H 6 R16 A 1 307 1 R16 R16 . 
I 7 D12 A 1 308 1 D12 D12 . 
J 7 D12 A 1 309 2 D12 D12 . 
K 8 HOH A 1 401 410 HOH HOH . 
K 8 HOH A 2 402 441 HOH HOH . 
K 8 HOH A 3 403 402 HOH HOH . 
K 8 HOH A 4 404 420 HOH HOH . 
K 8 HOH A 5 405 527 HOH HOH . 
K 8 HOH A 6 406 450 HOH HOH . 
K 8 HOH A 7 407 447 HOH HOH . 
K 8 HOH A 8 408 412 HOH HOH . 
K 8 HOH A 9 409 448 HOH HOH . 
K 8 HOH A 10 410 401 HOH HOH . 
K 8 HOH A 11 411 529 HOH HOH . 
K 8 HOH A 12 412 515 HOH HOH . 
K 8 HOH A 13 413 440 HOH HOH . 
K 8 HOH A 14 414 419 HOH HOH . 
K 8 HOH A 15 415 446 HOH HOH . 
K 8 HOH A 16 416 403 HOH HOH . 
K 8 HOH A 17 417 444 HOH HOH . 
K 8 HOH A 18 418 504 HOH HOH . 
K 8 HOH A 19 419 424 HOH HOH . 
K 8 HOH A 20 420 404 HOH HOH . 
K 8 HOH A 21 421 433 HOH HOH . 
K 8 HOH A 22 422 407 HOH HOH . 
K 8 HOH A 23 423 507 HOH HOH . 
K 8 HOH A 24 424 431 HOH HOH . 
K 8 HOH A 25 425 526 HOH HOH . 
K 8 HOH A 26 426 432 HOH HOH . 
K 8 HOH A 27 427 422 HOH HOH . 
K 8 HOH A 28 428 425 HOH HOH . 
K 8 HOH A 29 429 511 HOH HOH . 
K 8 HOH A 30 430 456 HOH HOH . 
K 8 HOH A 31 431 428 HOH HOH . 
K 8 HOH A 32 432 438 HOH HOH . 
K 8 HOH A 33 433 414 HOH HOH . 
K 8 HOH A 34 434 418 HOH HOH . 
K 8 HOH A 35 435 501 HOH HOH . 
K 8 HOH A 36 436 405 HOH HOH . 
K 8 HOH A 37 437 505 HOH HOH . 
K 8 HOH A 38 438 518 HOH HOH . 
K 8 HOH A 39 439 524 HOH HOH . 
K 8 HOH A 40 440 427 HOH HOH . 
K 8 HOH A 41 441 513 HOH HOH . 
K 8 HOH A 42 442 429 HOH HOH . 
K 8 HOH A 43 443 445 HOH HOH . 
K 8 HOH A 44 444 455 HOH HOH . 
K 8 HOH A 45 445 442 HOH HOH . 
K 8 HOH A 46 446 434 HOH HOH . 
K 8 HOH A 47 447 413 HOH HOH . 
K 8 HOH A 48 448 416 HOH HOH . 
K 8 HOH A 49 449 503 HOH HOH . 
K 8 HOH A 50 450 514 HOH HOH . 
K 8 HOH A 51 451 435 HOH HOH . 
K 8 HOH A 52 452 430 HOH HOH . 
K 8 HOH A 53 453 519 HOH HOH . 
K 8 HOH A 54 454 520 HOH HOH . 
K 8 HOH A 55 455 436 HOH HOH . 
K 8 HOH A 56 456 417 HOH HOH . 
K 8 HOH A 57 457 423 HOH HOH . 
K 8 HOH A 58 458 528 HOH HOH . 
K 8 HOH A 59 459 406 HOH HOH . 
K 8 HOH A 60 460 517 HOH HOH . 
K 8 HOH A 61 461 512 HOH HOH . 
K 8 HOH A 62 462 509 HOH HOH . 
K 8 HOH A 63 463 451 HOH HOH . 
K 8 HOH A 64 464 510 HOH HOH . 
K 8 HOH A 65 465 437 HOH HOH . 
K 8 HOH A 66 466 415 HOH HOH . 
K 8 HOH A 67 467 454 HOH HOH . 
K 8 HOH A 68 468 439 HOH HOH . 
K 8 HOH A 69 469 523 HOH HOH . 
K 8 HOH A 70 470 522 HOH HOH . 
K 8 HOH A 71 471 443 HOH HOH . 
K 8 HOH A 72 472 530 HOH HOH . 
K 8 HOH A 73 473 408 HOH HOH . 
K 8 HOH A 74 474 506 HOH HOH . 
K 8 HOH A 75 475 525 HOH HOH . 
K 8 HOH A 76 476 453 HOH HOH . 
K 8 HOH A 77 477 426 HOH HOH . 
K 8 HOH A 78 478 521 HOH HOH . 
K 8 HOH A 79 479 531 HOH HOH . 
K 8 HOH A 80 480 409 HOH HOH . 
K 8 HOH A 81 481 449 HOH HOH . 
K 8 HOH A 82 482 508 HOH HOH . 
K 8 HOH A 83 483 421 HOH HOH . 
K 8 HOH A 84 484 411 HOH HOH . 
K 8 HOH A 85 485 516 HOH HOH . 
K 8 HOH A 86 486 452 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . I 7 23.921 50.661 30.12 1 50.05 ? C1 D12 308 A 1 
HETATM 2 C C2 D12 . . . I 7 24.467 51.903 29.45 1 48.8 ? C2 D12 308 A 1 
HETATM 3 C C3 D12 . . . I 7 23.889 53.138 30.107 1 47.86 ? C3 D12 308 A 1 
HETATM 4 C C4 D12 . . . I 7 24.327 54.362 29.332 1 46.39 ? C4 D12 308 A 1 
HETATM 5 C C5 D12 . . . I 7 23.435 55.533 29.671 1 44.55 ? C5 D12 308 A 1 
HETATM 6 C C6 D12 . . . I 7 23.882 56.739 28.877 1 45.1 ? C6 D12 308 A 1 
HETATM 7 C C7 D12 . . . I 7 23.602 57.998 29.667 1 44.64 ? C7 D12 308 A 1 
HETATM 8 C C8 D12 . . . I 7 24.319 59.158 29.014 1 45.11 ? C8 D12 308 A 1 
HETATM 9 C C9 D12 . . . I 7 23.833 60.46 29.611 1 44.8 ? C9 D12 308 A 1 
HETATM 10 C C10 D12 . . . I 7 24.395 61.623 28.822 1 44.67 ? C10 D12 308 A 1 
HETATM 11 C C11 D12 . . . I 7 23.867 62.925 29.384 1 44.98 ? C11 D12 308 A 1 
HETATM 12 C C12 D12 . . . I 7 24.102 64.042 28.391 1 45.35 ? C12 D12 308 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#