data_5AXR
#
_model_server_result.job_id            h1rzLWeBn66S2AQhVSBC4Q 
_model_server_result.datetime_utc      '2024-11-09 23:24:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5axr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    5AXR 
#
_exptl.entry_id    5AXR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5AXR 
_cell.length_a            67.112 
_cell.length_b            67.112 
_cell.length_c            46.717 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5AXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 162 A CYS 162 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc1 A O GLN 9 A GLN 9 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? 
metalc ? metalc2 A O THR 13 A THR 13 1_555 F NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc3 A OD1 ASN 54 A ASN 54 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc4 A O SER 70 A SER 70 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc5 A O THR 71 A THR 71 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc6 A NE2 HIS 72 A HIS 72 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc7 A ND1 HIS 74 A HIS 74 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc8 A OD2 ASP 76 A ASP 76 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc9 A NE2 HIS 77 A HIS 77 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc10 A NE2 HIS 150 A HIS 150 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc11 A O GLY 153 A GLY 153 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc12 A NE2 HIS 215 A HIS 215 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc13 A O GLU 231 A GLU 231 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? 
metalc ? metalc14 A OG SER 234 A SER 234 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? 
metalc ? metalc15 A OH TYR 236 A TYR 236 1_555 F NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc16 A O TYR 236 A TYR 236 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc17 A O ASP 238 A ASP 238 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc18 B ZN ZN . A ZN 301 1_555 J S1 COM . A COM 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc19 C ZN ZN . A ZN 302 1_555 J S1 COM . A COM 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc20 D NA NA . A NA 303 1_555 K O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc21 D NA NA . A NA 303 1_555 K O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc22 E NA NA . A NA 304 1_555 K O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc23 F NA NA . A NA 305 1_555 K O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc24 F NA NA . A NA 305 1_555 K O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc25 H NA NA . A NA 307 1_555 K O HOH . A HOH 406 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc26 H NA NA . A NA 307 1_555 K O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc27 I NA NA . A NA 308 1_555 K O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? 
metalc ? metalc28 I NA NA . A NA 308 1_555 K O HOH . A HOH 521 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5AXR 
_atom_sites.fract_transf_matrix[1][1]    0.0149 
_atom_sites.fract_transf_matrix[1][2]    0.008603 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 3 NA A 1 303 401 NA NA . 
E 3 NA A 1 304 402 NA NA . 
F 3 NA A 1 305 403 NA NA . 
G 3 NA A 1 306 404 NA NA . 
H 3 NA A 1 307 405 NA NA . 
I 3 NA A 1 308 406 NA NA . 
J 4 COM A 1 309 501 COM 5AB . 
K 5 HOH A 1 401 749 HOH HOH . 
K 5 HOH A 2 402 759 HOH HOH . 
K 5 HOH A 3 403 652 HOH HOH . 
K 5 HOH A 4 404 768 HOH HOH . 
K 5 HOH A 5 405 696 HOH HOH . 
K 5 HOH A 6 406 758 HOH HOH . 
K 5 HOH A 7 407 645 HOH HOH . 
K 5 HOH A 8 408 778 HOH HOH . 
K 5 HOH A 9 409 693 HOH HOH . 
K 5 HOH A 10 410 746 HOH HOH . 
K 5 HOH A 11 411 709 HOH HOH . 
K 5 HOH A 12 412 676 HOH HOH . 
K 5 HOH A 13 413 687 HOH HOH . 
K 5 HOH A 14 414 757 HOH HOH . 
K 5 HOH A 15 415 636 HOH HOH . 
K 5 HOH A 16 416 710 HOH HOH . 
K 5 HOH A 17 417 627 HOH HOH . 
K 5 HOH A 18 418 769 HOH HOH . 
K 5 HOH A 19 419 744 HOH HOH . 
K 5 HOH A 20 420 666 HOH HOH . 
K 5 HOH A 21 421 705 HOH HOH . 
K 5 HOH A 22 422 642 HOH HOH . 
K 5 HOH A 23 423 661 HOH HOH . 
K 5 HOH A 24 424 617 HOH HOH . 
K 5 HOH A 25 425 667 HOH HOH . 
K 5 HOH A 26 426 675 HOH HOH . 
K 5 HOH A 27 427 619 HOH HOH . 
K 5 HOH A 28 428 625 HOH HOH . 
K 5 HOH A 29 429 629 HOH HOH . 
K 5 HOH A 30 430 655 HOH HOH . 
K 5 HOH A 31 431 684 HOH HOH . 
K 5 HOH A 32 432 752 HOH HOH . 
K 5 HOH A 33 433 631 HOH HOH . 
K 5 HOH A 34 434 650 HOH HOH . 
K 5 HOH A 35 435 614 HOH HOH . 
K 5 HOH A 36 436 721 HOH HOH . 
K 5 HOH A 37 437 646 HOH HOH . 
K 5 HOH A 38 438 733 HOH HOH . 
K 5 HOH A 39 439 774 HOH HOH . 
K 5 HOH A 40 440 740 HOH HOH . 
K 5 HOH A 41 441 739 HOH HOH . 
K 5 HOH A 42 442 683 HOH HOH . 
K 5 HOH A 43 443 670 HOH HOH . 
K 5 HOH A 44 444 622 HOH HOH . 
K 5 HOH A 45 445 724 HOH HOH . 
K 5 HOH A 46 446 664 HOH HOH . 
K 5 HOH A 47 447 658 HOH HOH . 
K 5 HOH A 48 448 734 HOH HOH . 
K 5 HOH A 49 449 613 HOH HOH . 
K 5 HOH A 50 450 647 HOH HOH . 
K 5 HOH A 51 451 632 HOH HOH . 
K 5 HOH A 52 452 621 HOH HOH . 
K 5 HOH A 53 453 725 HOH HOH . 
K 5 HOH A 54 454 764 HOH HOH . 
K 5 HOH A 55 455 716 HOH HOH . 
K 5 HOH A 56 456 747 HOH HOH . 
K 5 HOH A 57 457 682 HOH HOH . 
K 5 HOH A 58 458 638 HOH HOH . 
K 5 HOH A 59 459 634 HOH HOH . 
K 5 HOH A 60 460 730 HOH HOH . 
K 5 HOH A 61 461 633 HOH HOH . 
K 5 HOH A 62 462 708 HOH HOH . 
K 5 HOH A 63 463 698 HOH HOH . 
K 5 HOH A 64 464 761 HOH HOH . 
K 5 HOH A 65 465 765 HOH HOH . 
K 5 HOH A 66 466 662 HOH HOH . 
K 5 HOH A 67 467 711 HOH HOH . 
K 5 HOH A 68 468 699 HOH HOH . 
K 5 HOH A 69 469 750 HOH HOH . 
K 5 HOH A 70 470 704 HOH HOH . 
K 5 HOH A 71 471 751 HOH HOH . 
K 5 HOH A 72 472 639 HOH HOH . 
K 5 HOH A 73 473 712 HOH HOH . 
K 5 HOH A 74 474 630 HOH HOH . 
K 5 HOH A 75 475 720 HOH HOH . 
K 5 HOH A 76 476 722 HOH HOH . 
K 5 HOH A 77 477 648 HOH HOH . 
K 5 HOH A 78 478 772 HOH HOH . 
K 5 HOH A 79 479 713 HOH HOH . 
K 5 HOH A 80 480 612 HOH HOH . 
K 5 HOH A 81 481 643 HOH HOH . 
K 5 HOH A 82 482 665 HOH HOH . 
K 5 HOH A 83 483 735 HOH HOH . 
K 5 HOH A 84 484 738 HOH HOH . 
K 5 HOH A 85 485 766 HOH HOH . 
K 5 HOH A 86 486 668 HOH HOH . 
K 5 HOH A 87 487 635 HOH HOH . 
K 5 HOH A 88 488 608 HOH HOH . 
K 5 HOH A 89 489 753 HOH HOH . 
K 5 HOH A 90 490 690 HOH HOH . 
K 5 HOH A 91 491 736 HOH HOH . 
K 5 HOH A 92 492 770 HOH HOH . 
K 5 HOH A 93 493 715 HOH HOH . 
K 5 HOH A 94 494 671 HOH HOH . 
K 5 HOH A 95 495 706 HOH HOH . 
K 5 HOH A 96 496 763 HOH HOH . 
K 5 HOH A 97 497 729 HOH HOH . 
K 5 HOH A 98 498 678 HOH HOH . 
K 5 HOH A 99 499 637 HOH HOH . 
K 5 HOH A 100 500 756 HOH HOH . 
K 5 HOH A 101 501 743 HOH HOH . 
K 5 HOH A 102 502 659 HOH HOH . 
K 5 HOH A 103 503 673 HOH HOH . 
K 5 HOH A 104 504 707 HOH HOH . 
K 5 HOH A 105 505 762 HOH HOH . 
K 5 HOH A 106 506 656 HOH HOH . 
K 5 HOH A 107 507 742 HOH HOH . 
K 5 HOH A 108 508 732 HOH HOH . 
K 5 HOH A 109 509 755 HOH HOH . 
K 5 HOH A 110 510 628 HOH HOH . 
K 5 HOH A 111 511 640 HOH HOH . 
K 5 HOH A 112 512 623 HOH HOH . 
K 5 HOH A 113 513 697 HOH HOH . 
K 5 HOH A 114 514 728 HOH HOH . 
K 5 HOH A 115 515 660 HOH HOH . 
K 5 HOH A 116 516 723 HOH HOH . 
K 5 HOH A 117 517 654 HOH HOH . 
K 5 HOH A 118 518 703 HOH HOH . 
K 5 HOH A 119 519 780 HOH HOH . 
K 5 HOH A 120 520 714 HOH HOH . 
K 5 HOH A 121 521 611 HOH HOH . 
K 5 HOH A 122 522 618 HOH HOH . 
K 5 HOH A 123 523 737 HOH HOH . 
K 5 HOH A 124 524 700 HOH HOH . 
K 5 HOH A 125 525 695 HOH HOH . 
K 5 HOH A 126 526 620 HOH HOH . 
K 5 HOH A 127 527 615 HOH HOH . 
K 5 HOH A 128 528 719 HOH HOH . 
K 5 HOH A 129 529 609 HOH HOH . 
K 5 HOH A 130 530 727 HOH HOH . 
K 5 HOH A 131 531 607 HOH HOH . 
K 5 HOH A 132 532 754 HOH HOH . 
K 5 HOH A 133 533 691 HOH HOH . 
K 5 HOH A 134 534 610 HOH HOH . 
K 5 HOH A 135 535 602 HOH HOH . 
K 5 HOH A 136 536 624 HOH HOH . 
K 5 HOH A 137 537 760 HOH HOH . 
K 5 HOH A 138 538 657 HOH HOH . 
K 5 HOH A 139 539 606 HOH HOH . 
K 5 HOH A 140 540 767 HOH HOH . 
K 5 HOH A 141 541 701 HOH HOH . 
K 5 HOH A 142 542 717 HOH HOH . 
K 5 HOH A 143 543 603 HOH HOH . 
K 5 HOH A 144 544 726 HOH HOH . 
K 5 HOH A 145 545 601 HOH HOH . 
K 5 HOH A 146 546 626 HOH HOH . 
K 5 HOH A 147 547 605 HOH HOH . 
K 5 HOH A 148 548 694 HOH HOH . 
K 5 HOH A 149 549 731 HOH HOH . 
K 5 HOH A 150 550 604 HOH HOH . 
K 5 HOH A 151 551 681 HOH HOH . 
K 5 HOH A 152 552 745 HOH HOH . 
K 5 HOH A 153 553 674 HOH HOH . 
K 5 HOH A 154 554 748 HOH HOH . 
K 5 HOH A 155 555 688 HOH HOH . 
K 5 HOH A 156 556 672 HOH HOH . 
K 5 HOH A 157 557 741 HOH HOH . 
K 5 HOH A 158 558 677 HOH HOH . 
K 5 HOH A 159 559 641 HOH HOH . 
K 5 HOH A 160 560 685 HOH HOH . 
K 5 HOH A 161 561 692 HOH HOH . 
K 5 HOH A 162 562 649 HOH HOH . 
K 5 HOH A 163 563 718 HOH HOH . 
K 5 HOH A 164 564 651 HOH HOH . 
K 5 HOH A 165 565 663 HOH HOH . 
K 5 HOH A 166 566 653 HOH HOH . 
K 5 HOH A 167 567 689 HOH HOH . 
K 5 HOH A 168 568 783 HOH HOH . 
K 5 HOH A 169 569 779 HOH HOH . 
K 5 HOH A 170 570 669 HOH HOH . 
K 5 HOH A 171 571 775 HOH HOH . 
K 5 HOH A 172 572 644 HOH HOH . 
K 5 HOH A 173 573 702 HOH HOH . 
K 5 HOH A 174 574 680 HOH HOH . 
K 5 HOH A 175 575 782 HOH HOH . 
K 5 HOH A 176 576 777 HOH HOH . 
K 5 HOH A 177 577 771 HOH HOH . 
K 5 HOH A 178 578 686 HOH HOH . 
K 5 HOH A 179 579 679 HOH HOH . 
K 5 HOH A 180 580 616 HOH HOH . 
K 5 HOH A 181 581 776 HOH HOH . 
K 5 HOH A 182 582 781 HOH HOH . 
K 5 HOH A 183 583 773 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -38.27 
_atom_site.Cartn_y               11.369 
_atom_site.Cartn_z               -0.65 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        7.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           308 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#